Adrian Egli

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 30

Top Topics

Machine Learning

Coronavirus Disease

Staphylococcus Aureus

Top Venues

Genome medicine

Microbiology spectrum

This page only lists publications with an associated author ORCID identifier.

Publications

Vanni Benvenga, Aline Cuénod, Srinithi Purushothaman, Gottfried Dasen, Maja Weisser-Rohacek, Stefano Bassetti, Tim Roloff, Martin Siegemund, Laurence Lacroix, Julia Anna Bielicki, Marianne Wehrli, Paul Friderich, Reno Frei, Andreas F Widmer, Kathrin Herzog, Hans Fankhauser, Oliver Nolte, Thomas Bodmer, Martin Risch, Olivier Dubuis, Sigrid Pranghofer, Romana Calligaris-Maibach, Susanne Graf, Vincent Perreten, Helena M B Seth-Smith, Adrian Egli
Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome medicine 16 (1) (2024)
Julian Dommann, Jakob Kerbl-Knapp, Diana Albertos Torres, Adrian Egli, Jennifer Keiser, Pierre H H Schneeberger
A novel barcoded nanopore sequencing workflow of high-quality, full-length bacterial 16S amplicons for taxonomic annotation of bacterial isolates and complex microbial communities. mSystems (2024)
Michael Buettcher, Adrian Egli, Sarah Albini, Ekkehardt Altpeter, Anton Labutin, Valeria Guidi, Mauro Tonolla, Reto Lienhard, Opota Onya, Patrizia Schmid, Tsering Wuethrich, Kristina M Schmidt, null null
Tularemia on the rise in Switzerland? A one health approach is needed! Infection 52 (3) (2024)
Vanni Benvenga, Aline Cuénod, Srinithi Purushothaman, Gottfried Dasen, Maja Weisser-Rohacek, Stefano Bassetti, Tim Roloff, Martin Siegemund, Laurence Lacroix, Julia Anna Bielicki, Marianne Wehrli, Paul Friderich, Reno Frei, Andreas F Widmer, Kathrin Herzog, Hans Fankhauser, Oliver Nolte, Thomas Bodmer, Martin Risch, Olivier Dubuis, Sigrid Pranghofer, Romana Calligaris-Maibach, Susanne Graf, Vincent Perreten, Helena M B Seth-Smith, Adrian Egli
Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome medicine 16 (1) (2024)
Michael Buettcher, Adrian Egli, Sarah Albini, Ekkehardt Altpeter, Anton Labutin, Valeria Guidi, Mauro Tonolla, Reto Lienhard, Opota Onya, Patrizia Schmid, Tsering Wuethrich, Kristina M Schmidt, null null
Tularemia on the rise in Switzerland? A one health approach is needed! Infection 52 (3) (2024)
Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans H Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard A Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli, null null
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum 12 (5) (2024)
Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans H Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard A Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli, null null
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum (2024)
Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans H Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard A Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli, null null
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology spectrum 12 (5) (2024)
Michael Buettcher, Adrian Egli, Sarah Albini, Ekkehardt Altpeter, Anton Labutin, Valeria Guidi, Mauro Tonolla, Reto Lienhard, Opota Onya, Patrizia Schmid, Tsering Wuethrich, Kristina M Schmidt, null null
Tularemia on the rise in Switzerland? A one health approach is needed! Infection 52 (3) (2024)
Vanni Benvenga, Aline Cuénod, Srinithi Purushothaman, Gottfried Dasen, Maja Weisser-Rohacek, Stefano Bassetti, Tim Roloff, Martin Siegemund, Laurence Lacroix, Julia Anna Bielicki, Marianne Wehrli, Paul Friderich, Reno Frei, Andreas F Widmer, Kathrin Herzog, Hans Fankhauser, Oliver Nolte, Thomas Bodmer, Martin Risch, Olivier Dubuis, Sigrid Pranghofer, Romana Calligaris-Maibach, Susanne Graf, Vincent Perreten, Helena M B Seth-Smith, Adrian Egli
Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome medicine 16 (1) (2024)
Michael Buettcher, Adrian Egli, Sarah Albini, Ekkehardt Altpeter, Anton Labutin, Valeria Guidi, Mauro Tonolla, Reto Lienhard, Opota Onya, Patrizia Schmid, Tsering Wuethrich, Kristina M Schmidt, null null
Tularemia on the rise in Switzerland? A one health approach is needed! Infection 52 (3) (2024)
Michael Buettcher, Adrian Egli, Sarah Albini, Ekkehardt Altpeter, Anton Labutin, Valeria Guidi, Mauro Tonolla, Reto Lienhard, Opota Onya, Patrizia Schmid, Tsering Wuethrich, Kristina M Schmidt, null null
Tularemia on the rise in Switzerland? A one health approach is needed! Infection (2024)
Matteo Mombelli, Dionysios Neofytos, Uyen Huynh-Do, Javier Sánchez-Céspedes, Susanne Stampf, Dela Golshayan, Suzan Dahdal, Guido Stirnimann, Aurelia Schnyder, Christian Garzoni, Reto M Venzin, Lorenzo Magenta, Melanie Schönenberger, Laura Walti, Cédric Hirzel, Aline Munting, Michael Dickenmann, Michael Koller, John-David Aubert, Jürg Steiger, Manuel Pascual, Thomas F Mueller, Macé Schuurmans, Christoph Berger, Isabelle Binet, Jean Villard, Nicolas J Mueller, Adrian Egli, Elisa Cordero, Christian van Delden, Oriol Manuel, null null
Immunogenicity of High-Dose vs. MF59-adjuvanted vs. Standard Influenza Vaccine in Solid Organ Transplant Recipients: The STOP-FLU trial. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2023)
Stefano Mancini, Helena M B Seth-Smith, Natalia Kolesnik-Goldmann, Vladimira Hinic, Tim Roloff, Frank Imkamp, Adrian Egli
Evaluation of the RESIST ACINETO multiplex immunochromatographic assay for detection of OXA-23-like, OXA-40/58-like and NDM carbapenemase production in Acinetobacter baumannii. The Journal of antimicrobial chemotherapy (2023)
Adrian Egli
ChatGPT, GPT-4, and other large language models - the next revolution for clinical microbiology? Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2023)
Fabienne B Fischer, Melina Bigler, Daniel Mäusezahl, Jan Hattendorf, Adrian Egli, Timothy R Julian, Franziska Rölli, Valeria Gaia, Monica Wymann, Françoise Fridez, Stefanie Bertschi, null null
Legionnaires' disease in Switzerland: rationale and study protocol of a prospective national case-control and molecular source attribution study (SwissLEGIO). Infection (2023)
Srinithi Purushothaman, Marco Meola, Adrian Egli
Combination of Whole Genome Sequencing and Metagenomics for Microbiological Diagnostics. International journal of molecular sciences 23 (17) (2022)
Sarah A Nadeau, Timothy G Vaughan, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Emma B Hodcroft, Tobias Schär, Ina Nissen, Natascha Santacroce, Elodie Burcklen, Pedro F Ferreira, Kim Philipp Jablonski, Susana Posada Céspedes, Vincenzo Capece, Sophie Seidel, Noemi Santamaria de Souza, Julia Martínez Gómez, Phil Fang Cheng, Philipp Peter Bosshard, Mitchell Paul Levesque, Verena Kufner, Stefan Schmutz, Maryam Zaheri, Michael Huber, Alexandra Trkola, Samuel Cordey, Florian Laubscher, Ana Rita Gonçalves, Sébastien Aeby, Trestan Pillonel, Damien Jacot, Claire Bertelli, Gilbert Greub, Karoline Leuzinger, Madlen Stange, Alfredo Mari, Tim Roloff, Helena Seth-Smith, Hans H Hirsch, Adrian Egli, Maurice Redondo, Olivier Kobel, Christoph Noppen, Louis du Plessis, Niko Beerenwinkel, Richard A Neher, Christian Beisel, Tanja Stadler
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data. Science translational medicine (2022)
Martin Diebold, Marco Meola, Srinithi Purushothaman, Lena K Siewert, Elisabeth Pössnecker, Tim Roloff, Raija Lp Lindberg, Jens Kuhle, Ludwig Kappos, Tobias Derfuss, Adrian Egli, Anne-Katrin Pröbstel
Gut microbiota composition as a candidate risk factor for dimethyl fumarate-induced lymphopenia in multiple sclerosis. Gut microbes 14 (1) (2022)
Jelissa Katharina Peter, Fanny Wegner, Severin Gsponer, Fabrice Helfenstein, Tim Roloff, Rahel Tarnutzer, Kerstin Grosheintz, Moritz Back, Carla Schaubhut, Sabina Wagner, Helena M B Seth-Smith, Patrick Scotton, Maurice Redondo, Christiane Beckmann, Tanja Stadler, Andrea Salzmann, Henriette Kurth, Karoline Leuzinger, Stefano Bassetti, Roland Bingisser, Martin Siegemund, Maja Weisser, Manuel Battegay, Sarah Tschudin Sutter, Aitana Lebrand, Hans H Hirsch, Simon Fuchs, Adrian Egli
SARS-CoV-2 Vaccine Alpha and Delta Variant Breakthrough Infections Are Rare and Mild but Can Happen Relatively Early after Vaccination. Microorganisms 10 (5) (2022)
Ilaria Callegari, Mika Schneider, Giuliano Berloffa, Tobias Mühlethaler, Sebastian Holdermann, Edoardo Galli, Tim Roloff, Renate Boss, Laura Infanti, Nina Khanna, Adrian Egli, Andreas S Buser, Gert Zimmer, Tobias Derfuss, Nicholas S R Sanderson
Potent neutralization by monoclonal human IgM against SARS-CoV-2 is impaired by class switch. EMBO reports 23 (7) (2022)
Caroline Weis, Aline Cuénod, Bastian Rieck, Olivier Dubuis, Susanne Graf, Claudia Lang, Michael Oberle, Maximilian Brackmann, Kirstine K Søgaard, Michael Osthoff, Karsten M Borgwardt, Adrian Egli
Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning. Nature medicine 28 (1) (2022)
Gilbert Greub, Giorgia Caruana, Michael Schweitzer, Mauro Imperiali, Veronika Muigg, Martin Risch, Antony Croxatto, Opota Onya, Stefanie Heller, Diana Albertos Torres, Marie-Lise Tritten, Karoline Leuzinger, Hans H Hirsch, Reto Lienhard, Adrian Egli
Multicenter Technical Validation of 30 Rapid Antigen Tests for the Detection of SARS-CoV-2 (VALIDATE). Microorganisms 9 (12) (2021)
Madlen Stange, Alfredo Mari, Tim Roloff, Helena M B Seth-Smith, Michael Schweitzer, Myrta Brunner, Karoline Leuzinger, Kirstine K Søgaard, Alexander Gensch, Sarah Tschudin-Sutter, Simon Fuchs, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Rita Schneider-Sliwa, Manuel Battegay, Hans H Hirsch, Adrian Egli
SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event. PLoS pathogens 17 (3) (2021)
Lorena van den Bogaart, Brian M Lang, Dionysios Neofytos, Adrian Egli, Laura N Walti, Katia Boggian, Christian Garzoni, Christoph Berger, Manuel Pascual, Christian van Delden, Nicolas J Mueller, Oriol Manuel, Matteo Mombelli, null null
Epidemiology and outcomes of medically attended and microbiologically confirmed bacterial foodborne infections in solid organ transplant recipients. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons (2021)
Alfredo Mari, Tim Roloff, Madlen Stange, Kirstine K Søgaard, Erblin Asllanaj, Gerardo Tauriello, Leila Tamara Alexander, Michael Schweitzer, Karoline Leuzinger, Alexander Gensch, Aurélien Emmanuel Martinez, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Parham Sendi, Manuel Battegay, Catia Marzolini, Helena M B Seth-Smith, Torsten Schwede, Hans H Hirsch, Adrian Egli
Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance. Microorganisms 9 (5) (2021)
Giorgia Caruana, Antony Croxatto, Eleftheria Kampouri, Antonios Kritikos, Onya Opota, Maryline Foerster, René Brouillet, Laurence Senn, Reto Lienhard, Adrian Egli, Giuseppe Pantaleo, Pierre-Nicolas Carron, Gilbert Greub
Implementing SARS-CoV-2 Rapid Antigen Testing in the Emergency Ward of a Swiss University Hospital: The INCREASE Study. Microorganisms 9 (4) (2021)
Ana Rita Goncalves Cabecinhas, Tim Roloff, Madlen Stange, Claire Bertelli, Michael Huber, Alban Ramette, Chaoran Chen, Sarah A Nadeau, Yannick Gerth, Sabine Yerly, Opota Onya, Trestan Pillonel, Tobias Schuster, Cesar M J A Metzger, Jonas Sieber, Michael Bel, Nadia Wohlwend, Christian Baumann, Michel C Koch, Pascal Bittel, Karoline Leuzinger, Myrta Brunner, Franziska Suter-Riniker, Livia Berlinger, Kirstine K Søgaard, Christiane Beckmann, Christoph Noppen, Maurice Redondo, Ingrid Steffen, Helena M B Seth-Smith, Alfredo Mari, Reto Lienhard, Martin Risch, Oliver Nolte, Isabella Eckerle, Gladys Martinetti Lucchini, Emma B Hodcroft, Richard A Neher, Tanja Stadler, Hans H Hirsch, Stephen L Leib, Lorenz Risch, Laurent Kaiser, Alexandra Trkola, Gilbert Greub, Adrian Egli
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms 9 (4) (2021)
Andrea C Büchler, Vladimir Lazarevic, Nadia Gaïa, Myriam Girard, Friedrich Eckstein, Adrian Egli, Sarah Tschudin Sutter, Jacques Schrenzel
Mycobacterium chelonae Infection Identified by Metagenomic Next-Generation Sequencing as the Probable Cause of Acute Contained Rupture of a Biological Composite Graft-A Case Report. International journal of molecular sciences 23 (1) (2021)
François Huber, Hans Peter Lang, Daniela Lang, Daniel Wüthrich, Vladimira Hinić, Christoph Gerber, Adrian Egli, Ernst Meyer
Rapid and Ultrasensitive Detection of Mutations and Genes Relevant to Antimicrobial Resistance in Bacteria. Global challenges (Hoboken, NJ) 5 (2) (2020)