Alexandros Stamatakis

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 30

Top Topics

Circulating Tumor

Loop Mediated Isothermal Amplification

Top Venues

Molecular biology and evolution

Bioinformatics (Oxford, England)

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Johanna Trost, Julia Haag, Dimitri H Ohler, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau
Simulations of Sequence Evolution: How (Un)realistic They Are and Why. Molecular biology and evolution 41 (1) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Benoit Morel, Tom A Williams, Alexandros Stamatakis, Gergely J Szöllősi
AleRax: a tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss. Bioinformatics (Oxford, England) 40 (4) (2024)
Tom A Williams, Adrian A Davin, Benoit Morel, Lénárd L Szánthó, Anja Spang, Alexandros Stamatakis, Philip Hugenholtz, Gergely J Szöllősi
Parameter estimation and species tree rooting using ALE and GeneRax. Genome biology and evolution (2023)
Isabelle Ewers, Lubomír Rajter, Lucas Czech, Frédéric Mahé, Alexandros Stamatakis, Micah Dunthorn
Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. The Journal of eukaryotic microbiology (2023)
Johanna Trost, Julia Haag, Dimitri H Ohler, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau
Simulations of sequence evolution: how (un)realistic they are and why. Molecular biology and evolution (2023)
Johanna Trost, Julia Haag, Dimitri H Ohler, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau
Simulations of sequence evolution: how (un)realistic they are and why. Molecular biology and evolution (2023)
Benoit Morel, Tom A Williams, Alexandros Stamatakis
Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Anastasis Togkousidis, Alexey M Kozlov, Julia Haag, Dimitri H Ohler, Alexandros Stamatakis
Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using dataset difficulty. Molecular biology and evolution (2023)
Benoit Morel, Tom A Williams, Alexandros Stamatakis
Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Benoit Morel, Tom A Williams, Alexandros Stamatakis
Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Johanna Trost, Julia Haag, Dimitri H Ohler, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau
Simulations of sequence evolution: how (un)realistic they are and why. Molecular biology and evolution (2023)
Julia Haag, Lukas Hübner, Alexey M Kozlov, Alexandros Stamatakis
The Free Lunch is not over yet-systematic exploration of numerical thresholds in maximum likelihood phylogenetic inference. Bioinformatics advances 3 (1) (2023)
Julia Haag, Dimitri H Ohler, Ben Bettisworth, Alexandros Stamatakis
From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses. Molecular biology and evolution 39 (12) (2022)
Julia Haag, Dimitri H Ohler, Ben Bettisworth, Alexandros Stamatakis
From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses. Molecular biology and evolution 39 (12) (2022)
Sarah Lutteropp, Céline Scornavacca, Alexey M Kozlov, Benoit Morel, Alexandros Stamatakis
NetRAX: accurate and fast maximum likelihood phylogenetic network inference. Bioinformatics (Oxford, England) 38 (15) (2022)
Benoit Morel, Paul Schade, Sarah Lutteropp, Tom A Williams, Gergely J Szöllősi, Alexandros Stamatakis
SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss. Molecular biology and evolution 39 (2) (2022)
Julia Haag, Dimitri H Ohler, Ben Bettisworth, Alexandros Stamatakis
From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses. Molecular biology and evolution 39 (12) (2022)
Julia Haag, Dimitri H Ohler, Ben Bettisworth, Alexandros Stamatakis
From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses. Molecular biology and evolution 39 (12) (2022)
Benoit Morel, Pierre Barbera, Lucas Czech, Ben Bettisworth, Lukas Hübner, Sarah Lutteropp, Dora Serdari, Evangelia-Georgia Kostaki, Ioannis Mamais, Alexey M Kozlov, Pavlos Pavlidis, Dimitrios Paraskevis, Alexandros Stamatakis
Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult. Molecular biology and evolution 38 (5) (2021)
Sebastian G Gornik, Bruno Gideon Bergheim, Benoit Morel, Alexandros Stamatakis, Nicholas S Foulkes, Annika Guse
Photoreceptor Diversification Accompanies the Evolution of Anthozoa. Molecular biology and evolution 38 (5) (2021)
Pierre Barbera, Lucas Czech, Sarah Lutteropp, Alexandros Stamatakis
SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements. Molecular ecology resources 21 (1) (2020)
Lucas Czech, Alexandros Stamatakis
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples. PloS one 14 (5) (2019)