Simon Y W Ho (Simon Yw Ho)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 49

Top Topics

Genome Wide Association

Arabidopsis Thaliana

Top Venues

Nature ecology & evolution

Ecology and evolution

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data. Genome biology and evolution 16 (4) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Santiago Claramunt, Edward L Braun, Joel Cracraft, Jon Fjeldså, Simon Y W Ho, Peter Houde, Jacqueline M T Nguyen, Josefin Stiller
Calibrating the genomic clock of modern birds using fossils. Proceedings of the National Academy of Sciences of the United States of America 121 (39) (2024)
Toby G L Kovacs, James Walker, Simon Hellemans, Thomas Bourguignon, Nikolai J Tatarnic, Jane M McRae, Simon Y W Ho, Nathan Lo
Dating in the Dark: Elevated Substitution Rates in Cave Cockroaches (Blattodea: Nocticolidae) Have Negative Impacts on Molecular Date Estimates. Systematic biology (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data. Genome biology and evolution 16 (4) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Author Correction: Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data. Genome biology and evolution 16 (4) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing molecular clock hypotheses with genomic data. Genome biology and evolution (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Antonio L Rayos, Matthew A M Renner, Simon Y W Ho
The Neotropical endemic liverwort subfamily Micropterygioideae had circum-Antarctic links to the rest of the Lepidoziaceae during the early Cretaceous. Ecology and evolution 14 (3) (2024)
Yi-Kai Tea, Yulu Zhou, Kyle M Ewart, Guo Cheng, Kazuhiko Kawasaki, Joseph D DiBattista, Simon Y W Ho, Nathan Lo, Shaohua Fan
The spotted parrotfish genome provides insights into the evolution of a coral reef dietary specialist (Teleostei: Labridae: Scarini: Cetoscarus ocellatus ). Ecology and evolution 14 (3) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey M Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M T Nguyen, Simon Y W Ho, Brant C Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangii Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A Ogilvie, Luay K Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter Andrew Hosner, Rute R da Fonseca, Bent Petersen, Joseph Andrew Tobias, Tomás Székely, Jonathan David Kennedy, Andrew Hart Reeve, Andras Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F Bertelsen, Fumin Lei, Carsten Rahbek, Gary R Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L Braun, Marcus Thomas Pius Gilbert, Erich D Jarvis, Siavash Mirarab, Guo-Jie Zhang
Complexity of avian evolution revealed by family-level genomes. Nature 629 (8013) (2024)
Antonio L Rayos, Matthew A M Renner, Simon Y W Ho
The Neotropical endemic liverwort subfamily Micropterygioideae had circum-Antarctic links to the rest of the Lepidoziaceae during the early Cretaceous. Ecology and evolution 14 (3) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Antonio L Rayos, Matthew A M Renner, Simon Y W Ho
The Neotropical endemic liverwort subfamily Micropterygioideae had circum-Antarctic links to the rest of the Lepidoziaceae during the early Cretaceous. Ecology and evolution 14 (3) (2024)
Yi-Kai Tea, Yulu Zhou, Kyle M Ewart, Guo Cheng, Kazuhiko Kawasaki, Joseph D DiBattista, Simon Y W Ho, Nathan Lo, Shaohua Fan
The spotted parrotfish genome provides insights into the evolution of a coral reef dietary specialist (Teleostei: Labridae: Scarini: Cetoscarus ocellatus ). Ecology and evolution 14 (3) (2024)
Arong Luo, Chi Zhang, Qing-Song Zhou, Simon Y W Ho, Chao-Dong Zhu
Impacts of Taxon-Sampling Schemes on Bayesian Tip Dating under the Fossilized Birth-Death Process. Systematic biology (2023)
Yasmin Asar, Hervé Sauquet, Simon Y W Ho
Evaluating the Accuracy of Methods for Detecting Correlated Rates of Molecular and Morphological Evolution. Systematic biology (2023)
Shusuke Kawakubo, Yasuhiro Tomitaka, Kenta Tomimura, Ryoko Koga, Hiroki Matsuoka, Seiji Uematsu, Kazuo Yamashita, Simon Y W Ho, Kazusato Ohshima
The recombinogenic history of turnip mosaic potyvirus reveals its introduction to Japan in the 19th century. Virus evolution 8 (2) (2022)
Shusuke Kawakubo, Fangluan Gao, Shifang Li, Zhongyang Tan, Ying-Kun Huang, Charith Raj Adkar-Purushothama, Chennappa Gurikar, Phoowanarth Maneechoat, Pissawan Chiemsombat, Seint San Aye, Naruto Furuya, Oleksiy Shevchenko, Josef Špak, Dijana Škorić, Simon Y W Ho, Kazusato Ohshima
Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road. Proceedings of the National Academy of Sciences of the United States of America 118 (12) (2021)
Maximilian Larena, Federico Sánchez Quinto, Per Sjödin, James McKenna, Carlo Ebeo, Rebecca Reyes, Ophelia Casel, Jin-Yuan Huang, Kim Pullupul Hagada, Dennis Guilay, Jennelyn Reyes, Fatima Pir Allian, Virgilio Mori, Lahaina Sue Azarcon, Alma Manera, Celito Terando, Lucio Jamero, Gauden Sireg, Renefe Manginsay-Tremedal, Maria Shiela Labos, Richard Dian Vilar, Acram Latiph, Rodelio Linsahay Saway, Erwin Marte, Pablito Magbanua, Amor Morales, Ismael Java, Rudy Reveche, Becky Barrios, Erlinda Burton, Jesus Christopher Salon, Ma Junaliah Tuazon Kels, Adrian Albano, Rose Beatrix Cruz-Angeles, Edison Molanida, Lena Granehäll, Mário Vicente, Hanna Edlund, Jun-Hun Loo, Jean A Trejaut, Simon Y W Ho, Lawrence Reid, Helena Malmström, Carina M Schlebusch, Kurt Lambeck, Phillip Endicott, Mattias Jakobsson
Multiple migrations to the Philippines during the last 50,000 years. Proceedings of the National Academy of Sciences of the United States of America 118 (13) (2021)
Emil Karpinski, Dirk Hackenberger, Grant Zazula, Christopher Widga, Ana T Duggan, G Brian Golding, Melanie Kuch, Jennifer Klunk, Christopher N Jass, Pamela Groves, Patrick S Druckenmiller, Blaine W Schubert, Joaquin Arroyo-Cabrales, William F Simpson, John W Hoganson, Daniel C Fisher, Simon Y W Ho, Ross D E MacPhee, Hendrik N Poinar
American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations. Nature communications 11 (1) (2020)
Fangluan Gao, Shusuke Kawakubo, Simon Y W Ho, Kazusato Ohshima
The evolutionary history and global spatio-temporal dynamics of potato virus Y. Virus evolution 6 (2) (2020)
Kyle M Ewart, Nathan Lo, Rob Ogden, Leo Joseph, Simon Y W Ho, Greta J Frankham, Mark D B Eldridge, Richard Schodde, Rebecca N Johnson
Phylogeography of the iconic Australian red-tailed black-cockatoo (Calyptorhynchus banksii) and implications for its conservation. Heredity 125 (3) (2020)
Monica Fahey, Maurizio Rossetto, Peter D Wilson, Simon Y W Ho
Habitat preference differentiates the Holocene range dynamics but not barrier effects on two sympatric, congeneric trees (Tristaniopsis, Myrtaceae). Heredity 123 (4) (2019)
Fangluan Gao, Chengjie Chen, Daej A Arab, Zhenguo Du, Yehua He, Simon Y W Ho
EasyCodeML: A visual tool for analysis of selection using CodeML. Ecology and evolution 9 (7) (2019)
Jessica E Thomas, Gary R Carvalho, James Haile, Nicolas J Rawlence, Michael D Martin, Simon Y W Ho, Arnór Þ Sigfússon, Vigfús A Jósefsson, Morten Frederiksen, Jannie F Linnebjerg, Jose A Samaniego Castruita, Jonas Niemann, Mikkel-Holger S Sinding, Marcela Sandoval-Velasco, André Er Soares, Robert Lacy, Christina Barilaro, Juila Best, Dirk Brandis, Chiara Cavallo, Mikelo Elorza, Kimball L Garrett, Maaike Groot, Friederike Johansson, Jan T Lifjeld, Göran Nilson, Dale Serjeanston, Paul Sweet, Errol Fuller, Anne Karin Hufthammer, Morten Meldgaard, Jon Fjeldså, Beth Shapiro, Michael Hofreiter, John R Stewart, M Thomas P Gilbert, Michael Knapp
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. eLife 8 (2019)
Yi-Kai Tea, Cara Van Der Wal, William B Ludt, Anthony C Gill, Nathan Lo, Simon Y W Ho
Boomeranging around Australia: Historical biogeography and population genomics of the anti-equatorial fish Microcanthus strigatus (Teleostei: Microcanthidae). Molecular ecology 28 (16) (2019)
Niklas Mather, Samuel M Traves, Simon Y W Ho
A practical introduction to sequentially Markovian coalescent methods for estimating demographic history from genomic data. Ecology and evolution 10 (1) (2019)
Rebecca N Johnson, Denis O'Meally, Zhiliang Chen, Graham J Etherington, Simon Y W Ho, Will J Nash, Catherine E Grueber, Yuanyuan Cheng, Camilla M Whittington, Siobhan Dennison, Emma Peel, Wilfried Haerty, Rachel J O'Neill, Don Colgan, Tonia L Russell, David E Alquezar-Planas, Val Attenbrow, Jason G Bragg, Parice A Brandies, Amanda Yoon-Yee Chong, Janine E Deakin, Federica Di Palma, Zachary Duda, Mark D B Eldridge, Kyle M Ewart, Carolyn J Hogg, Greta J Frankham, Arthur Georges, Amber K Gillett, Merran Govendir, Alex D Greenwood, Takashi Hayakawa, Kristofer M Helgen, Matthew Hobbs, Clare E Holleley, Thomas N Heider, Elizabeth A Jones, Andrew King, Danielle Madden, Jennifer A Marshall Graves, Katrina M Morris, Linda E Neaves, Hardip R Patel, Adam Polkinghorne, Marilyn B Renfree, Charles Robin, Ryan Salinas, Kyriakos Tsangaras, Paul D Waters, Shafagh A Waters, Belinda Wright, Marc R Wilkins, Peter Timms, Katherine Belov
Adaptation and conservation insights from the koala genome. Nature genetics 50 (8) (2018)
Georgi Hudjashov, Phillip Endicott, Helen Post, Nano Nagle, Simon Y W Ho, Daniel John Lawson, Maere Reidla, Monika Karmin, Siiri Rootsi, Ene Metspalu, Lauri Saag, Richard Villems, Murray P Cox, R John Mitchell, Ralph L Garcia-Bertrand, Mait Metspalu, Rene J Herrera
Investigating the origins of eastern Polynesians using genome-wide data from the Leeward Society Isles. Scientific reports 8 (1) (2018)
K Jun Tong, David A Duchêne, Sebastián Duchêne, Jemma L Geoghegan, Simon Y W Ho
A comparison of methods for estimating substitution rates from ancient DNA sequence data. BMC evolutionary biology 18 (1) (2018)
Evelyn T Todd, Simon Y W Ho, Peter C Thomson, Rachel A Ang, Brandon D Velie, Natasha A Hamilton
Founder-specific inbreeding depression affects racing performance in Thoroughbred horses. Scientific reports 8 (1) (2018)
Xingguang Li, Haizhou Liu, Lu Liu, Yi Feng, Marcia L Kalish, Simon Y W Ho, Yiming Shao
Tracing the epidemic history of HIV-1 CRF01_AE clusters using near-complete genome sequences. Scientific reports 7 (1) (2017)
Ryosuke Yasaka, Hirofumi Fukagawa, Mutsumi Ikematsu, Hiroko Soda, Savas Korkmaz, Alireza Golnaraghi, Nikolaos Katis, Simon Y W Ho, Adrian J Gibbs, Kazusato Ohshima
The Timescale of Emergence and Spread of Turnip Mosaic Potyvirus. Scientific reports 7 (1) (2017)
Daej A Arab, Anna Namyatova, Theodore A Evans, Stephen L Cameron, David K Yeates, Simon Y W Ho, Nathan Lo
Parallel evolution of mound-building and grass-feeding in Australian nasute termites. Biology letters 13 (2) (2017)
Simon Y W Ho, K Jun Tong, Charles S P Foster, Andrew M Ritchie, Nathan Lo, Michael D Crisp
Biogeographic calibrations for the molecular clock. Biology letters 11 (9) (2016)
Bastien Llamas, Lars Fehren-Schmitz, Guido Valverde, Julien Soubrier, Swapan Mallick, Nadin Rohland, Susanne Nordenfelt, Cristina Valdiosera, Stephen M Richards, Adam Rohrlach, Maria Inés Barreto Romero, Isabel Flores Espinoza, Elsa Tomasto Cagigao, Lucía Watson Jiménez, Krzysztof Makowski, Ilán Santiago Leboreiro Reyna, Josefina Mansilla Lory, Julio Alejandro Ballivián Torrez, Mario A Rivera, Richard L Burger, Maria Constanza Ceruti, Johan Reinhard, R Spencer Wells, Gustavo G Politis, Calogero M Santoro, Vivien G Standen, Colin Smith, David Reich, Simon Y W Ho, Alan Cooper, Wolfgang Haak
Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Science advances 2 (4) (2016)
Michelle M Alexander, Simon Y W Ho, Martyna Molak, Ross Barnett, Örjan Carlborg, Ben Dorshorst, Christa Honaker, Francois Besnier, Per Wahlberg, Keith Dobney, Paul Siegel, Leif Andersson, Greger Larson
Mitogenomic analysis of a 50-generation chicken pedigree reveals a rapid rate of mitochondrial evolution and evidence for paternal mtDNA inheritance. Biology letters 11 (10) (2016)