Alexis J Combes (Alexis Combes)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 18

Top Topics

Ulcerative Colitis

Dendritic Cells

Top Venues

Nature communications

Science signaling

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Kevin M Tharp, Kelly Kersten, Ori Maller, Greg A Timblin, Connor Stashko, Fernando P Canale, Rosa E Menjivar, Mary-Kate Hayward, Ilona Berestjuk, Johanna Ten Hoeve, Bushra Samad, Alastrair J Ironside, Marina Pasca Di Magliano, Alexander Muir, Roger Geiger, Alexis J Combes, Valerie M Weaver
Tumor-associated macrophages restrict CD8 + T cell function through collagen deposition and metabolic reprogramming of the breast cancer microenvironment. Nature cancer 5 (7) (2024)
Elvira Mennillo, Yang Joon Kim, Gyehyun Lee, Iulia Rusu, Ravi K Patel, Leah C Dorman, Emily Flynn, Stephanie Li, Jared L Bain, Christopher Andersen, Arjun Rao, Stanley Tamaki, Jessica Tsui, Alan Shen, Madison L Lotstein, Maha Rahim, Mohammad Naser, Faviola Bernard-Vazquez, Walter Eckalbar, Soo-Jin Cho, Kendall Beck, Najwa El-Nachef, Sara Lewin, Daniel R Selvig, Jonathan P Terdiman, Uma Mahadevan, David Y Oh, Gabriela K Fragiadakis, Angela Oliveira Pisco, Alexis J Combes, Michael G Kattah
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nature communications 15 (1) (2024)
Elvira Mennillo, Yang Joon Kim, Gyehyun Lee, Iulia Rusu, Ravi K Patel, Leah C Dorman, Emily Flynn, Stephanie Li, Jared L Bain, Christopher Andersen, Arjun Rao, Stanley Tamaki, Jessica Tsui, Alan Shen, Madison L Lotstein, Maha Rahim, Mohammad Naser, Faviola Bernard-Vazquez, Walter Eckalbar, Soo-Jin Cho, Kendall Beck, Najwa El-Nachef, Sara Lewin, Daniel R Selvig, Jonathan P Terdiman, Uma Mahadevan, David Y Oh, Gabriela K Fragiadakis, Angela Oliveira Pisco, Alexis J Combes, Michael G Kattah
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nature communications 15 (1) (2024)
Elvira Mennillo, Yang Joon Kim, Gyehyun Lee, Iulia Rusu, Ravi K Patel, Leah C Dorman, Emily Flynn, Stephanie Li, Jared L Bain, Christopher Andersen, Arjun Rao, Stanley Tamaki, Jessica Tsui, Alan Shen, Madison L Lotstein, Maha Rahim, Mohammad Naser, Faviola Bernard-Vazquez, Walter Eckalbar, Soo-Jin Cho, Kendall Beck, Najwa El-Nachef, Sara Lewin, Daniel R Selvig, Jonathan P Terdiman, Uma Mahadevan, David Y Oh, Gabriela K Fragiadakis, Angela Oliveira Pisco, Alexis J Combes, Michael G Kattah
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nature communications 15 (1) (2024)
Kevin M Tharp, Kelly Kersten, Ori Maller, Greg A Timblin, Connor Stashko, Fernando P Canale, Rosa E Menjivar, Mary-Kate Hayward, Ilona Berestjuk, Johanna Ten Hoeve, Bushra Samad, Alastrair J Ironside, Marina Pasca Di Magliano, Alexander Muir, Roger Geiger, Alexis J Combes, Valerie M Weaver
Tumor-associated macrophages restrict CD8 + T cell function through collagen deposition and metabolic reprogramming of the breast cancer microenvironment. Nature cancer (2024)
Elvira Mennillo, Yang Joon Kim, Gyehyun Lee, Iulia Rusu, Ravi K Patel, Leah C Dorman, Emily Flynn, Stephanie Li, Jared L Bain, Christopher Andersen, Arjun Rao, Stanley Tamaki, Jessica Tsui, Alan Shen, Madison L Lotstein, Maha Rahim, Mohammad Naser, Faviola Bernard-Vazquez, Walter Eckalbar, Soo-Jin Cho, Kendall Beck, Najwa El-Nachef, Sara Lewin, Daniel R Selvig, Jonathan P Terdiman, Uma Mahadevan, David Y Oh, Gabriela K Fragiadakis, Angela Oliveira Pisco, Alexis J Combes, Michael G Kattah
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nature communications 15 (1) (2024)
Elvira Mennillo, Yang Joon Kim, Gyehyun Lee, Iulia Rusu, Ravi K Patel, Leah C Dorman, Emily Flynn, Stephanie Li, Jared L Bain, Christopher Andersen, Arjun Rao, Stanley Tamaki, Jessica Tsui, Alan Shen, Madison L Lotstein, Maha Rahim, Mohammad Naser, Faviola Bernard-Vazquez, Walter Eckalbar, Soo-Jin Cho, Kendall Beck, Najwa El-Nachef, Sara Lewin, Daniel R Selvig, Jonathan P Terdiman, Uma Mahadevan, David Y Oh, Gabriela K Fragiadakis, Angela Oliveira Pisco, Alexis J Combes, Michael G Kattah
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nature communications 15 (1) (2024)
Elvira Mennillo, Yang Joon Kim, Gyehyun Lee, Iulia Rusu, Ravi K Patel, Leah C Dorman, Emily Flynn, Stephanie Li, Jared L Bain, Christopher Andersen, Arjun Rao, Stanley Tamaki, Jessica Tsui, Alan Shen, Madison L Lotstein, Maha Rahim, Mohammad Naser, Faviola Bernard-Vazquez, Walter Eckalbar, Soo-Jin Cho, Kendall Beck, Najwa El-Nachef, Sara Lewin, Daniel R Selvig, Jonathan P Terdiman, Uma Mahadevan, David Y Oh, Gabriela K Fragiadakis, Angela Oliveira Pisco, Alexis J Combes, Michael G Kattah
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nature communications 15 (1) (2024)
Kevin M Tharp, Kelly Kersten, Ori Maller, Greg A Timblin, Connor Stashko, Fernando P Canale, Rosa E Menjivar, Mary-Kate Hayward, Ilona Berestjuk, Johanna Ten Hoeve, Bushra Samad, Alastrair J Ironside, Marina Pasca Di Magliano, Alexander Muir, Roger Geiger, Alexis J Combes, Valerie M Weaver
Tumor-associated macrophages restrict CD8 + T cell function through collagen deposition and metabolic reprogramming of the breast cancer microenvironment. Nature cancer 5 (7) (2024)
Alexis J Combes, Bushra Samad, Matthew F Krummel
Defining and using immune archetypes to classify and treat cancer. Nature reviews. Cancer (2023)
Mark R Looney, Catharina Conrad, Melia Magnen, Jessica Tsui, Harrison Wismer, Mohammad Naser, Urmila Venkataramani, Bushra Samad, Simon J Cleary, Longhui Qiu, Jennifer Tian, Marco De Giovanni, Nicole Mende, Emmanuelle Passegue, Elisa Laurenti, Alexis J Combes
Functional haematopoietic progenitor cells in the adult human lung. Research square (2023)
Paul V Munson, Juraj Adamik, Felix J Hartmann, Patricia M B Favaro, Daniel Ho, Sean C Bendall, Alexis J Combes, Matthew F Krummel, Karen Zhang, Robin Kate Kelley, Lisa H Butterfield
Polyunsaturated fatty acid-bound alpha-fetoprotein promotes immune suppression by altering human dendritic cell metabolism. Cancer research (2023)
Robert I Seed, Kenji Kobayashi, Saburo Ito, Naoki Takasaka, Anthony Cormier, Jillian M Jespersen, Jean Publicover, Suprita Trilok, Alexis J Combes, Nayvin W Chew, Jocelyn S Chapman, Matthew F Krummel, Jianlong Lou, James Marks, Yifan Cheng, Jody L Baron, Stephen L Nishimura
A tumor-specific mechanism of Treg enrichment mediated by the integrin αvβ8. Science immunology 6 (57) (2022)
Juraj Adamik, Paul V Munson, Felix J Hartmann, Alexis J Combes, Philippe Pierre, Matthew F Krummel, Sean C Bendall, Rafael Jose Argüello, Lisa H Butterfield
Distinct metabolic states guide maturation of inflammatory and tolerogenic dendritic cells. Nature communications 13 (1) (2022)
Gaia Andreoletti, Cristina M Lanata, Laura Trupin, Ishan Paranjpe, Tia S Jain, Joanne Nititham, Kimberly E Taylor, Alexis J Combes, Lenka Maliskova, Chun Jimmie Ye, Patricia Katz, Maria Dall'Era, Jinoos Yazdany, Lindsey A Criswell, Marina Sirota
Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures. Communications biology 4 (1) (2021)
Alexis J Combes, Tristan Courau, Nicholas F Kuhn, Kenneth H Hu, Arja Ray, William S Chen, Nayvin W Chew, Simon J Cleary, Divyashree Kushnoor, Gabriella C Reeder, Alan Shen, Jessica Tsui, Kamir J Hiam-Galvez, Priscila Muñoz-Sandoval, Wandi S Zhu, David S Lee, Yang Sun, Ran You, Mélia Magnen, Lauren Rodriguez, K W Im, Nina Kathrin Serwas, Aleksandra Leligdowicz, Colin R Zamecnik, Rita P Loudermilk, Michael R Wilson, Chun Jimmie Ye, Gabriela K Fragiadakis, Mark R Looney, Vincent Chan, Alyssa Ward, Sidney Carrillo, null null, Michael A Matthay, David J Erle, Prescott G Woodruff, Charles Langelier, Kirsten Kangelaris, Carolyn M Hendrickson, Carolyn Calfee, Arjun Arkal Rao, Matthew F Krummel
Global absence and targeting of protective immune states in severe COVID-19. Nature 591 (7848) (2021)
Monique G P van der Wijst, Sara E Vazquez, George C Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno, David S Lee, John R Greenland, Yang Sun, Richard K Perez, Anton Ogorodnikov, Alyssa Ward, Sabrina A Mann, Kara L Lynch, Cassandra Yun, Diane V Havlir, Gabriel Chamie, Carina Marquez, Bryan Greenhouse, Michail S Lionakis, Phillip J Norris, Larry J Dumont, Kathleen K Kelly, Peng Zhang, Qian Zhang, Adrian Gervais, Tom Le Voyer, Alexander Whatley, Yichen Si, Ashley Byrne, Alexis J Combes, Arjun Arkal Rao, Yun S Song, Gabriela K Fragiadakis, Kirsten Kangelaris, Carolyn S Calfee, David J Erle, Carolyn M Hendrickson, Matthew F Krummel, Prescott G Woodruff, Charles R Langelier, Jean Laurent Casanova, Joseph L Derisi, Mark S Anderson, Chun Jimmie Ye, null null
Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19. Science translational medicine 13 (612) (2021)
Jessica Perego, Andreia Mendes, Clarisse Bourbon, Voahirana Camosseto, Alexis J Combes, Hong Liu, Thien-Phong Vu Manh, Alexandre Dalet, Lionel Chasson, Lionel Spinelli, Nathalie Bardin, Laurent Chiche, Manuel A S Santos, Evelina Gatti, Philippe Pierre
Guanabenz inhibits TLR9 signaling through a pathway that is independent of eIF2α dephosphorylation by the GADD34/PP1c complex. Science signaling 11 (514) (2018)