Ashley Byrne

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 19

Top Topics

Coronavirus Disease

Single Molecule

Top Venues

Nature communications

Life science alliance

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Ashley Byrne, Daniel Le, Kostianna Sereti, Hari Menon, Samir Vaidya, Neha Patel, Jessica Lund, Ana Xavier-Magalhães, Minyi Shi, Yuxin Liang, Timothy Sterne-Weiler, Zora Modrusan, William Stephenson
Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer. Nature communications 15 (1) (2024)
Ashley Byrne, Daniel Le, Kostianna Sereti, Hari Menon, Samir Vaidya, Neha Patel, Jessica Lund, Ana Xavier-Magalhães, Minyi Shi, Yuxin Liang, Timothy Sterne-Weiler, Zora Modrusan, William Stephenson
Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer. Nature communications 15 (1) (2024)
Ashley Byrne, Daniel Le, Kostianna Sereti, Hari Menon, Samir Vaidya, Neha Patel, Jessica Lund, Ana Xavier-Magalhães, Minyi Shi, Yuxin Liang, Timothy Sterne-Weiler, Zora Modrusan, William Stephenson
Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer. Nature communications 15 (1) (2024)
Dania Nanes Sarfati, Yuan Xue, Eun Sun Song, Ashley Byrne, Daniel Le, Spyros Darmanis, Stephen R Quake, Adrien Burlacot, James Sikes, Bo Wang
Coordinated wound responses in a regenerative animal-algal holobiont. Nature communications 15 (1) (2024)
Michal Kabza, Alexander J Ritter, Ashley Byrne, Kostianna Sereti, Daniel Le, William Stephenson, Timothy Sterne-Weiler
Accurate long-read transcript discovery and quantification at single-cell, pseudo-bulk and bulk resolution with Isosceles. Nature communications 15 (1) (2024)
Ashley Byrne, Daniel Le, Kostianna Sereti, Hari Menon, Samir Vaidya, Neha Patel, Jessica Lund, Ana Xavier-Magalhães, Minyi Shi, Yuxin Liang, Timothy Sterne-Weiler, Zora Modrusan, William Stephenson
Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer. Nature communications 15 (1) (2024)
Michal Kabza, Alexander J Ritter, Ashley Byrne, Kostianna Sereti, Daniel Le, William Stephenson, Timothy Sterne-Weiler
Accurate long-read transcript discovery and quantification at single-cell, pseudo-bulk and bulk resolution with Isosceles. Nature communications 15 (1) (2024)
Dania Nanes Sarfati, Yuan Xue, Eun Sun Song, Ashley Byrne, Daniel Le, Spyros Darmanis, Stephen R Quake, Adrien Burlacot, James Sikes, Bo Wang
Coordinated wound responses in a regenerative animal-algal holobiont. Nature communications 15 (1) (2024)
Dania Nanes Sarfati, Yuan Xue, Eun Sun Song, Ashley Byrne, Daniel Le, Spyros Darmanis, Stephen R Quake, Adrien Burlacot, James Sikes, Bo Wang
Coordinated wound responses in a regenerative animal-algal holobiont. Nature communications 15 (1) (2024)
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing. Life science alliance 6 (1) (2022)
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing. Life science alliance 6 (1) (2022)
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing. Life science alliance 6 (1) (2022)
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing. Life science alliance 6 (1) (2022)
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing. Life science alliance 6 (1) (2022)
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing. Life science alliance 6 (1) (2022)
Alexandra Tsitsiklis, Beth Zha, Ashley Byrne, Catherine DeVoe, Sophia Levan, Elze Rackaityte, Sara Sunshine, Eran Mick, Rajani Ghale, Alejandra Jauregui, Norma F Neff, Aartik Sarma, Paula Serpa, Thomas Deiss, Amy Kistler, Sidney Carrillo, Karl Mark Ansel, Aleksandra Leligdowicz, Stephanie Christenson, Norman Jones, Bing Wu, Spyros Darmanis, Michael A Matthay, Susan V Lynch, Joseph DeRisi, Comet Consortium, Carolyn Hendrickson, Kirsten Kangelaris, Matthew F Krummel, Prescott Woodruff, David J Erle, Oren S Rosenberg, Carolyn Calfee, Charles R Langelier
Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19. Research square (2021)
Aartik Sarma, Stephanie A Christenson, Ashley Byrne, Eran Mick, Angela Oliveira Pisco, Catherine DeVoe, Thomas Deiss, Rajani Ghale, Beth Shoshana Zha, Alexandra Tsitsiklis, Alejandra Jauregui, Farzad Moazed, Angela M Detweiler, Natasha Spottiswoode, Pratik Sinha, Norma F Neff, Michelle Tan, Paula Hayakawa Serpa, Andrew Willmore, Karl Mark Ansel, Jennifer G Wilson, Aleksandra Leligdowicz, Emily R Siegel, Marina Sirota, Joseph L DeRisi, Michael A Matthay, null null, Carolyn M Hendrickson, Kirsten N Kangelaris, Matthew F Krummel, Prescott G Woodruff, David J Erle, Carolyn S Calfee, Charles R Langelier
Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS. Nature communications 12 (1) (2021)
Monique G P van der Wijst, Sara E Vazquez, George C Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno, David S Lee, John R Greenland, Yang Sun, Richard K Perez, Anton Ogorodnikov, Alyssa Ward, Sabrina A Mann, Kara L Lynch, Cassandra Yun, Diane V Havlir, Gabriel Chamie, Carina Marquez, Bryan Greenhouse, Michail S Lionakis, Phillip J Norris, Larry J Dumont, Kathleen K Kelly, Peng Zhang, Qian Zhang, Adrian Gervais, Tom Le Voyer, Alexander Whatley, Yichen Si, Ashley Byrne, Alexis J Combes, Arjun Arkal Rao, Yun S Song, Gabriela K Fragiadakis, Kirsten Kangelaris, Carolyn S Calfee, David J Erle, Carolyn M Hendrickson, Matthew F Krummel, Prescott G Woodruff, Charles R Langelier, Jean Laurent Casanova, Joseph L Derisi, Mark S Anderson, Chun Jimmie Ye, null null
Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19. Science translational medicine 13 (612) (2021)
Shelbi L Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A Beinart, Russell B Corbett-Detig
Horizontal transmission and recombination maintain forever young bacterial symbiont genomes. PLoS genetics 16 (8) (2020)