Amarda Shehu

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 19

Top Venues

Biomolecules

International journal of molecular sciences

bioRxiv : the preprint server for biology

Molecules (Basel, Switzerland)

George Mason University

Rice University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

George Mason University Aug 25 2014

United States

Associate Professor :: Computer Science

George Mason University Aug 20 2008 - Aug 24 2014

United States

Assistant Professor :: Computer Science

Education History

Rice University Aug 20 2002 - Jun 01 2008

United States

PHD :: Computer Science

Clarkson University Jan 10 1999 - May 15 2002

United States

BSC :: Computer Science

Publications

Yiyang Lian, Dale Bodian, Amarda Shehu
Elucidating the Role of Wildtype and Variant FGFR2 Structural Dynamics in (Dys)Function and Disorder. International journal of molecular sciences 25 (8) (2024)
Anowarul Kabir, Manish Bhattarai, Selma Peterson, Yonatan Najman-Licht, Kim Ø Rasmussen, Amarda Shehu, Alan R Bishop, Boian S Alexandrov, Anny Usheva
DNA breathing integration with deep learning foundational model advances genome-wide binding prediction of human transcription factors. Nucleic acids research (2024)
Anowarul Kabir, Manish Bhattarai, Kim Ø Rasmussen, Amarda Shehu, Alan R Bishop, Boian S Alexandrov, Anny Usheva
Advancing Transcription Factor Binding Site Prediction Using DNA Breathing Dynamics and Sequence Transformers via Cross Attention. bioRxiv : the preprint server for biology (2024)
Anowarul Kabir, Manish Bhattarai, Kim Ø Rasmussen, Amarda Shehu, Alan R Bishop, Boian S Alexandrov, Anny Usheva
Advancing Transcription Factor Binding Site Prediction Using DNA Breathing Dynamics and Sequence Transformers via Cross Attention. bioRxiv : the preprint server for biology (2024)
Yiyang Lian, Dale Bodian, Amarda Shehu
Elucidating the Role of Wildtype and Variant FGFR2 Structural Dynamics in (Dys)Function and Disorder. International journal of molecular sciences 25 (8) (2024)
Yiyang Lian, Dale Bodian, Amarda Shehu
Elucidating the Role of Wildtype and Variant FGFR2 Structural Dynamics in (Dys)Function and Disorder. International journal of molecular sciences 25 (8) (2024)
Anowarul Kabir, Manish Bhattarai, Kim Ø Rasmussen, Amarda Shehu, Anny Usheva, Alan R Bishop, Boian S Alexandrov
Examining DNA Breathing with pyDNA-EPBD. bioRxiv : the preprint server for biology (2023)
Yuanqi Du, Xiaojie Guo, Yinkai Wang, Amarda Shehu, Liang Zhao
Small molecule generation via disentangled representation learning. Bioinformatics (Oxford, England) 38 (12) (2022)
Kazi Lutful Kabir, Buyong Ma, Ruth Nussinov, Amarda Shehu
Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody. Biomolecules 12 (7) (2022)
Anowarul Kabir, Amarda Shehu
GOProFormer: A Multi-Modal Transformer Method for Gene Ontology Protein Function Prediction. Biomolecules 12 (11) (2022)
Fardina Fathmiul Alam, Amarda Shehu
Data Size and Quality Matter: Generating Physically-Realistic Distance Maps of Protein Tertiary Structures. Biomolecules 12 (7) (2022)
Gideon K Gogovi, Swabir Silayi, Amarda Shehu
Computing the Structural Dynamics of RVFV L Protein Domain in Aqueous Glycerol Solutions. Biomolecules 11 (10) (2021)
Taseef Rahman, Yuanqi Du, Liang Zhao, Amarda Shehu
Generative Adversarial Learning of Protein Tertiary Structures. Molecules (Basel, Switzerland) 26 (5) (2021)
Xiaojie Guo, Yuanqi Du, Sivani Tadepalli, Liang Zhao, Amarda Shehu
Generating tertiary protein structures via interpretable graph variational autoencoders. Bioinformatics advances 1 (1) (2021)
Xiaojie Guo, Yuanqi Du, Sivani Tadepalli, Liang Zhao, Amarda Shehu
Generating tertiary protein structures via interpretable graph variational autoencoders. Bioinformatics advances 1 (1) (2021)
Fardina Fathmiul Alam, Taseef Rahman, Amarda Shehu
Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy Selection. Molecules (Basel, Switzerland) 25 (5) (2020)
Ahmed Bin Zaman, Parastoo Kamranfar, Carlotta Domeniconi, Amarda Shehu
Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering. Molecules (Basel, Switzerland) 25 (9) (2020)
Nasrin Akhter, Gopinath Chennupati, Kazi Lutful Kabir, Hristo Djidjev, Amarda Shehu
Unsupervised and Supervised Learning over theEnergy Landscape for Protein Decoy Selection. Biomolecules 9 (10) (2019)
Tatiana Maximova, Ryan Moffatt, Buyong Ma, Ruth Nussinov, Amarda Shehu
Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics. PLoS computational biology 12 (4) (2016)

Amarda Shehu.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Amarda Shehu