Anatoly B Kolomeisky (A B Kolomeisky, Anatoly Kolomeisky)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 98

Top Venues

The journal of physical chemistry. B

The journal of physical chemistry letters

The Journal of chemical physics

Science advances

Rice University

Cornell University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Rice University Jul 01 2018

United States

Department Chair :: Chemistry

Education History

Cornell University Jul 01 1994 - Jan 01 1998

United States

PHD :: Chemistry

Publications

Utana Umezaki, Ashleigh D Smith McWillams, Zhao Tang, Zhi Mei Sonia He, Ivan R Siqueira, Stuart J Corr, Hijun Ryu, Anatoly B Kolomeisky, Matteo Pasquali, Angel A Martí
Brownian Diffusion of Hexagonal Boron Nitride Nanosheets and Graphene in Two Dimensions. ACS nano (2024)
Angela Medvedeva, Hamid Teimouri, Anatoly B Kolomeisky
Differences in Relevant Physicochemical Properties Correlate with Synergistic Activity of Antimicrobial Peptides. The journal of physical chemistry. B 128 (6) (2024)
Angela Medvedeva, Sofya Domakhina, Catherine Vasnetsov, Victor Vasnetsov, Anatoly B Kolomeisky
Physical-Chemical Approach to Designing Drugs with Multiple Targets. The journal of physical chemistry letters (2024)
Anupam Mondal, Anatoly B Kolomeisky
Why Are Nucleosome Breathing Dynamics Asymmetric? The journal of physical chemistry letters 15 (2) (2024)
Carson C Cole, Douglas R Walker, Sarah A H Hulgan, Brett H Pogostin, Joseph W R Swain, Mitchell D Miller, Weijun Xu, Ryan Duella, Mikita Misiura, Xu Wang, Anatoly B Kolomeisky, George N Philips, Jeffrey D Hartgerink
Heterotrimeric collagen helix with high specificity of assembly results in a rapid rate of folding. Nature chemistry (2024)
Hamid Teimouri, Angela Medvedeva, Anatoly B Kolomeisky
Unraveling the role of physicochemical differences in predicting protein-protein interactions. The Journal of chemical physics 161 (4) (2024)
Ciceron Ayala-Orozco, Hamid Teimouri, Angela Medvedeva, Bowen Li, Alex Lathem, Gang Li, Anatoly B Kolomeisky, James M Tour
Chemoinformatics Insights on Molecular Jackhammers and Cancer Cells. Journal of chemical information and modeling (2024)
Anupam Mondal, Anatoly B Kolomeisky
How Transcription Factors Binding Stimulates Transcriptional Bursting. The journal of physical chemistry letters 15 (34) (2024)
Utana Umezaki, Ashleigh D Smith McWillams, Zhao Tang, Zhi Mei Sonia He, Ivan R Siqueira, Stuart J Corr, Hijun Ryu, Anatoly B Kolomeisky, Matteo Pasquali, Angel A Martí
Brownian Diffusion of Hexagonal Boron Nitride Nanosheets and Graphene in Two Dimensions. ACS nano 18 (3) (2024)
Anupam Mondal, Anatoly B Kolomeisky
How Transcription Factors Binding Stimulates Transcriptional Bursting. The journal of physical chemistry letters (2024)
Anupam Mondal, Hamid Teimouri, Anatoly B Kolomeisky
Elucidating Physicochemical Features of Holin Proteins Responsible for Bacterial Cell Lysis. The journal of physical chemistry. B 128 (29) (2024)
Angela Medvedeva, Sofya Domakhina, Catherine Vasnetsov, Victor Vasnetsov, Anatoly B Kolomeisky
Physical-Chemical Approach to Designing Drugs with Multiple Targets. The journal of physical chemistry letters 15 (7) (2024)
Angela Medvedeva, Sofya Domakhina, Catherine Vasnetsov, Victor Vasnetsov, Anatoly B Kolomeisky
Physical-Chemical Approach to Designing Drugs with Multiple Targets. The journal of physical chemistry letters 15 (7) (2024)
Angela Medvedeva, Hamid Teimouri, Anatoly B Kolomeisky
Differences in Relevant Physicochemical Properties Correlate with Synergistic Activity of Antimicrobial Peptides. The journal of physical chemistry. B (2024)
Anupam Mondal, Anatoly B Kolomeisky
How Transcription Factors Binding Stimulates Transcriptional Bursting. The journal of physical chemistry letters 15 (34) (2024)
Angela Medvedeva, Hamid Teimouri, Anatoly B Kolomeisky
Differences in Relevant Physicochemical Properties Correlate with Synergistic Activity of Antimicrobial Peptides. The journal of physical chemistry. B 128 (6) (2024)
Anupam Mondal, Hamid Teimouri, Anatoly B Kolomeisky
Elucidating Physicochemical Features of Holin Proteins Responsible for Bacterial Cell Lysis. The journal of physical chemistry. B (2024)
Anupam Mondal, Anatoly B Kolomeisky
Why Are Nucleosome Breathing Dynamics Asymmetric? The journal of physical chemistry letters 15 (2) (2024)
Tripti Midha, Anatoly B Kolomeisky, Oleg A Igoshin
Insights into Error Control Mechanisms in Biological Processes: Copolymerization and Enzyme-Kinetics Revisited. The journal of physical chemistry. B 128 (23) (2024)
Ciceron Ayala-Orozco, Hamid Teimouri, Angela Medvedeva, Bowen Li, Alex Lathem, Gang Li, Anatoly B Kolomeisky, James M Tour
Chemoinformatics Insights on Molecular Jackhammers and Cancer Cells. Journal of chemical information and modeling 64 (14) (2024)
Tripti Midha, Anatoly B Kolomeisky, Oleg A Igoshin
Insights into Error Control Mechanisms in Biological Processes: Copolymerization and Enzyme-Kinetics Revisited. The journal of physical chemistry. B (2024)
Anupam Mondal, Hamid Teimouri, Anatoly B Kolomeisky
Elucidating Physicochemical Features of Holin Proteins Responsible for Bacterial Cell Lysis. The journal of physical chemistry. B 128 (29) (2024)
Anupam Mondal, Anatoly B Kolomeisky
Why Are Nucleosome Breathing Dynamics Asymmetric? The journal of physical chemistry letters (2024)
Tripti Midha, Anatoly B Kolomeisky, Oleg A Igoshin
Linear-Decoupling Enables Accurate Speed and Accuracy Predictions for Copolymerization Processes. The journal of physical chemistry letters (2024)
Anupam Mondal, Cayke Felipe, Anatoly B Kolomeisky
Nucleosome Breathing Facilitates the Search for Hidden DNA Sites by Pioneer Transcription Factors. The journal of physical chemistry letters (2023)
Anupam Mondal, Cayke Felipe, Anatoly B Kolomeisky
Nucleosome Breathing Facilitates the Search for Hidden DNA Sites by Pioneer Transcription Factors. The journal of physical chemistry letters 14 (17) (2023)
Angela Medvedeva, Hamid Teimouri, Anatoly B Kolomeisky
Predicting Antimicrobial Activity for Untested Peptide-Based Drugs Using Collaborative Filtering and Link Prediction. Journal of chemical information and modeling (2023)
Sridhar Vemulapalli, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Assembly of Synaptic Protein-DNA Complexes: Critical Role of Non-Specific Interactions. International journal of molecular sciences 24 (12) (2023)
Sridhar Vemulapalli, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Assembly of Synaptic Protein-DNA Complexes: Critical Role of Non-Specific Interactions. International journal of molecular sciences 24 (12) (2023)
Hamid Teimouri, Dorsa B Sattari Khavas, Cade Spaulding, Christopher B Li, Anatoly B Kolomeisky
Theoretical understanding of evolutionary dynamics on inhomogeneous networks. Physical biology (2023)
Hamid Teimouri, Angela Medvedeva, Anatoly B Kolomeisky
Bacteria-Specific Feature Selection for Enhanced Antimicrobial Peptide Activity Predictions Using Machine-Learning Methods. Journal of chemical information and modeling (2023)
Anupam Mondal, Cayke Felipe, Anatoly B Kolomeisky
Nucleosome Breathing Facilitates the Search for Hidden DNA Sites by Pioneer Transcription Factors. The journal of physical chemistry letters 14 (17) (2023)
Sridhar Vemulapalli, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Assembly of Synaptic Protein-DNA Complexes: Critical Role of Non-Specific Interactions. International journal of molecular sciences 24 (12) (2023)
Vardan Hoviki Vardanyan, Qian Wang, Anatoly B Kolomeisky
Dynamics of single-base editing: Theoretical analysis. The Journal of chemical physics 158 (24) (2023)
Tripti Midha, Joel D Mallory, Anatoly B Kolomeisky, Oleg A Igoshin
Synergy among Pausing, Intrinsic Proofreading, and Accessory Proteins Results in Optimal Transcription Speed and Tolerable Accuracy. The journal of physical chemistry letters (2023)
Thao N Nguyen, Hamid Teimouri, Anatoly B Kolomeisky
Increasing Heterogeneity in Antimicrobial Peptide Combinations Enhances Their Synergistic Activities. The journal of physical chemistry letters (2023)
Bhawakshi Punia, Srabanti Chaudhury, Anatoly B Kolomeisky
How Heterogeneity Affects Cooperative Communications within Single Nanocatalysts. The journal of physical chemistry letters (2023)
Vardan Hoviki Vardanyan, Qian Wang, Anatoly B Kolomeisky
Dynamics of single-base editing: Theoretical analysis. The Journal of chemical physics 158 (24) (2023)
Srabanti Chaudhury, Pankaj Jangid, Anatoly B Kolomeisky
Dynamics of chemical reactions on single nanocatalysts with heterogeneous active sites. The Journal of chemical physics 158 (7) (2023)
Anupam Mondal, Anatoly B Kolomeisky
Role of Nucleosome Sliding in the Protein Target Search for Covered DNA Sites. The journal of physical chemistry letters (2023)
Carson C Cole, Mikita Misiura, Sarah A H Hulgan, Caroline M Peterson, Joseph W Williams, Anatoly B Kolomeisky, Jeffrey D Hartgerink
Cation-π Interactions and Their Role in Assembling Collagen Triple Helices. Biomacromolecules 23 (11) (2022)
Cayke Felipe, Jaeoh Shin, Anatoly B Kolomeisky
How Pioneer Transcription Factors Search for Target Sites on Nucleosomal DNA. The journal of physical chemistry. B 126 (22) (2022)
Yaqing Wang, Tommy Stormberg, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Beyond Sequence: Internucleosomal Interactions Dominate Array Assembly. The journal of physical chemistry. B 126 (51) (2022)
Cade Spaulding, Hamid Teimouri, Anatoly B Kolomeisky
The role of spatial structures of tissues in cancer initiation dynamics. Physical biology 19 (5) (2022)
Alex Berlaga, Anatoly B Kolomeisky
Understanding Mechanisms of Secondary Active Transport by Analyzing the Effects of Mutations and Stoichiometry. The journal of physical chemistry letters 13 (24) (2022)
Yaqing Wang, Tommy Stormberg, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Beyond Sequence: Internucleosomal Interactions Dominate Array Assembly. The journal of physical chemistry. B 126 (51) (2022)
Karen Zagorski, Tommy Stormberg, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Nanorings to Probe Mechanical Stress of Single-Stranded DNA Mediated by the DNA Duplex. International journal of molecular sciences 23 (21) (2022)
Yaqing Wang, Tommy Stormberg, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Beyond Sequence: Internucleosomal Interactions Dominate Array Assembly. The journal of physical chemistry. B (2022)
Ana L Santos, Dongdong Liu, Anna K Reed, Aaron M Wyderka, Alexis van Venrooy, John Tianci Li, Victor D Li, Mikita Misiura, Olga Samoylova, Jacob L Beckham, Ciceron Ayala-Orozco, Anatoly B Kolomeisky, Lawrence B Alemany, Antonio Oliver, George P Tegos, James M Tour
Light-activated molecular machines are fast-acting broad-spectrum antibacterials that target the membrane. Science advances 8 (22) (2022)
Bhawakshi Punia, Srabanti Chaudhury, Anatoly B Kolomeisky
Microscopic mechanisms of cooperative communications within single nanocatalysts. Proceedings of the National Academy of Sciences of the United States of America 119 (3) (2022)
Qiwei Yu, Anatoly B Kolomeisky, Oleg A Igoshin
The energy cost and optimal design of networks for biological discrimination. Journal of the Royal Society, Interface 19 (188) (2022)
Minhyeok Chang, O-Chul Lee, Gayun Bu, Jaeho Oh, Na-Oh Yunn, Sung Ho Ryu, Hyung-Bae Kwon, Anatoly B Kolomeisky, Sang-Hee Shim, Junsang Doh, Jae-Hyung Jeon, Jong-Bong Lee
Formation of cellular close-ended tunneling nanotubes through mechanical deformation. Science advances 8 (13) (2022)
Yaqing Wang, Tommy Stormberg, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
Beyond Sequence: Internucleosomal Interactions Dominate Array Assembly. The journal of physical chemistry. B 126 (51) (2022)
Thao N Nguyen, Hamid Teimouri, Angela Medvedeva, Anatoly B Kolomeisky
Cooperativity in Bacterial Membrane Association Controls the Synergistic Activities of Antimicrobial Peptides. The journal of physical chemistry. B 126 (38) (2022)
Cayke Felipe, Jaeoh Shin, Anatoly B Kolomeisky
DNA Looping and DNA Conformational Fluctuations Can Accelerate Protein Target Search. The journal of physical chemistry. B 125 (7) (2021)
Bhawakshi Punia, Srabanti Chaudhury, Anatoly B Kolomeisky
Understanding the Reaction Dynamics on Heterogeneous Catalysts Using a Simple Stochastic Approach. The journal of physical chemistry letters (2021)
Qian Wang, Jie Yang, Zhicheng Zhong, Jeffrey A Vanegas, Xue Gao, Anatoly B Kolomeisky
A general theoretical framework to design base editors with reduced bystander effects. Nature communications 12 (1) (2021)
Golan Bel, Anton Zilman, Anatoly B Kolomeisky
Different time scales in dynamic systems with multiple outcomes. The Journal of chemical physics 153 (5) (2021)
Hamid Teimouri, Anatoly B Kolomeisky
Temporal order of mutations influences cancer initiation dynamics. Physical biology 18 (5) (2021)
Joel D Mallory, Xian F Mallory, Anatoly B Kolomeisky, Oleg A Igoshin
Theoretical Analysis Reveals the Cost and Benefit of Proofreading in Coronavirus Genome Replication. The journal of physical chemistry letters 12 (10) (2021)
Sridhar Vemulapalli, Mohtadin Hashemi, Anatoly B Kolomeisky, Yuri L Lyubchenko
DNA Looping Mediated by Site-Specific SfiI-DNA Interactions. The journal of physical chemistry. B 125 (18) (2021)
Alena Klindziuk, Anatoly B Kolomeisky
Understanding the molecular mechanisms of transcriptional bursting. Physical chemistry chemical physics : PCCP 23 (38) (2021)
Douglas R Walker, Ali A Alizadehmojarad, Anatoly B Kolomeisky, Jeffrey D Hartgerink
Charge-Free, Stabilizing Amide-π Interactions Can Be Used to Control Collagen Triple-Helix Self-Assembly. Biomacromolecules 22 (5) (2021)
Alena Klindziuk, Anatoly B Kolomeisky
Long-Range Supercoiling-Mediated RNA Polymerase Cooperation in Transcription. The journal of physical chemistry. B 125 (18) (2021)
David S Yang, Arash Saeedi, Aram Davtyan, Mohsen Fathi, Michael B Sherman, Mohammad S Safari, Alena Klindziuk, Michelle C Barton, Navin Varadarajan, Anatoly B Kolomeisky, Peter G Vekilov
Mesoscopic protein-rich clusters host the nucleation of mutant p53 amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America 118 (10) (2021)
Alex Berlaga, Anatoly B Kolomeisky
Molecular Mechanisms of Active Transport in Antiporters: Kinetic Constraints and Efficiency. The journal of physical chemistry letters 12 (39) (2021)
Hamid Teimouri, Thao N Nguyen, Anatoly B Kolomeisky
Single-cell stochastic modelling of the action of antimicrobial peptides on bacteria. Journal of the Royal Society, Interface 18 (182) (2021)
Srabanti Chaudhury, Divya Singh, Anatoly B Kolomeisky
Theoretical Investigations of the Dynamics of Chemical Reactions on Nanocatalysts with Multiple Active Sites. The journal of physical chemistry letters 11 (6) (2020)
Qiwei Yu, Joel D Mallory, Anatoly B Kolomeisky, Jiqiang Ling, Oleg A Igoshin
Trade-Offs between Speed, Accuracy, and Dissipation in tRNAIle Aminoacylation. The journal of physical chemistry letters 11 (10) (2020)
Joel D Mallory, Anatoly B Kolomeisky, Oleg A Igoshin
Kinetic control of stationary flux ratios for a wide range of biochemical processes. Proceedings of the National Academy of Sciences of the United States of America 117 (16) (2020)
Sangsin Lee, Ning Ding, Yi-Di Sun, Tanglong Yuan, Jing Li, Qichen Yuan, Lizhong Liu, Jie Yang, Qian Wang, Anatoly B Kolomeisky, Isaac B Hilton, Erwei Zuo, Xue Gao
Single C-to-T substitution using engineered APOBEC3G-nCas9 base editors with minimum genome- and transcriptome-wide off-target effects. Science advances 6 (29) (2020)
Joel D Mallory, Oleg A Igoshin, Anatoly B Kolomeisky
Do We Understand the Mechanisms Used by Biological Systems to Correct Their Errors? The journal of physical chemistry. B 124 (42) (2020)
Yangang Pan, Siddhartha Banerjee, Karen Zagorski, Luda S Shlyakhtenko, Anatoly B Kolomeisky, Yuri L Lyubchenko
Molecular Model for the Surface-Catalyzed Protein Self-Assembly. The journal of physical chemistry. B 124 (2) (2020)
Joel D Mallory, Anatoly B Kolomeisky, Oleg A Igoshin
Correction to "Trade-Offs between Error, Speed, Noise, and Energy Dissipation in Biological Processes with Proofreading". The journal of physical chemistry. B 124 (44) (2020)
Yu Zheng, Ali A Alizadehmojarad, Sergei M Bachilo, Anatoly B Kolomeisky, R Bruce Weisman
Dye Quenching of Carbon Nanotube Fluorescence Reveals Structure-Selective Coating Coverage. ACS nano 14 (9) (2020)
Hamid Teimouri, Rupsha Mukherjee, Anatoly B Kolomeisky
Stochastic Mechanisms of Cell-Size Regulation in Bacteria. The journal of physical chemistry letters 11 (20) (2020)
Jaeoh Shin, Alexander M Berezhkovskii, Anatoly B Kolomeisky
Biased Random Walk in Crowded Environment: Breaking Uphill/Downhill Symmetry of Transition Times. The journal of physical chemistry letters 11 (11) (2020)
Alice L Thorneywork, Jannes Gladrow, Yujia Qing, Marc Rico-Pasto, Felix Ritort, Hagan Bayley, Anatoly B Kolomeisky, Ulrich Felix Keyser
Direct detection of molecular intermediates from first-passage times. Science advances 6 (18) (2020)
Joel D Mallory, Anatoly B Kolomeisky, Oleg A Igoshin
Trade-Offs between Error, Speed, Noise, and Energy Dissipation in Biological Processes with Proofreading. The journal of physical chemistry. B 123 (22) (2019)
Qian Wang, Anatoly B Kolomeisky
Theoretical Analysis of Run Length Distributions for Coupled Motor Proteins. The journal of physical chemistry. B 123 (27) (2019)
Mikita M Misiura, Anatoly B Kolomeisky
Role of Intrinsically Disordered Regions in Acceleration of Protein-Protein Association. The journal of physical chemistry. B 124 (1) (2019)
Jaeoh Shin, Anatoly B Kolomeisky
Facilitation of DNA loop formation by protein-DNA non-specific interactions. Soft matter 15 (26) (2019)
Aram Davtyan, Anatoly B Kolomeisky
Theoretical insights into mechanisms of channel-facilitated molecular transport in the presence of stochastic gating. The Journal of chemical physics 150 (12) (2019)
Jaeoh Shin, Anatoly B Kolomeisky
Target search on DNA by interacting molecules: First-passage approach. The Journal of chemical physics 151 (12) (2019)
Mikita Misiura, Anatoly B Kolomeisky
Kinetic network model to explain gain-of-function mutations in ERK2 enzyme. The Journal of chemical physics 150 (15) (2019)
Hamid Teimouri, Maria P Kochugaeva, Anatoly B Kolomeisky
Elucidating the correlations between cancer initiation times and lifetime cancer risks. Scientific reports 9 (1) (2019)
Jaeoh Shin, Anatoly B Kolomeisky
Surface-Assisted Dynamic Search Processes. The journal of physical chemistry. B 122 (8) (2018)
Jaeoh Shin, Anatoly B Kolomeisky
Molecular search with conformational change: One-dimensional discrete-state stochastic model. The Journal of chemical physics 149 (17) (2018)
Mikita Misiura, Qian Wang, Margaret S Cheung, Anatoly B Kolomeisky
Correction to "Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins". The journal of physical chemistry. B 122 (29) (2018)
Mikita Misiura, Qian Wang, Margaret S Cheung, Anatoly B Kolomeisky
Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins. The journal of physical chemistry. B 122 (17) (2018)
Alena Klindziuk, Anatoly B Kolomeisky
Theoretical Investigation of Transcriptional Bursting: A Multistate Approach. The journal of physical chemistry. B 122 (50) (2018)
Alexey A Shvets, Maria P Kochugaeva, Anatoly B Kolomeisky
Mechanisms of Protein Search for Targets on DNA: Theoretical Insights. Molecules (Basel, Switzerland) 23 (9) (2018)
Behnaz Bozorgui, Anatoly B Kolomeisky, Hamid Teimouri
Physical-chemical mechanisms of pattern formation during gastrulation. The Journal of chemical physics 148 (12) (2018)
Maria P Kochugaeva, Alexander M Berezhkovskii, Anatoly B Kolomeisky
Optimal Length of Conformational Transition Region in Protein Search for Targets on DNA. The journal of physical chemistry letters 8 (17) (2017)
Yunxin Zhang, Anatoly B Kolomeisky
Theoretical Investigation of Distributions of Run Lengths for Biological Molecular Motors. The journal of physical chemistry. B 122 (13) (2017)
Kinshuk Banerjee, Anatoly B Kolomeisky, Oleg A Igoshin
Accuracy of Substrate Selection by Enzymes Is Controlled by Kinetic Discrimination. The journal of physical chemistry letters 8 (7) (2017)
Alexander M Berezhkovskii, Attila Szabo, T Rotbart, M Urbakh, Anatoly B Kolomeisky
Dependence of the Enzymatic Velocity on the Substrate Dissociation Rate. The journal of physical chemistry. B 121 (15) (2016)
Alexey A Shvets, Anatoly B Kolomeisky
The Role of DNA Looping in the Search for Specific Targets on DNA by Multisite Proteins. The journal of physical chemistry letters 7 (24) (2016)

Anatoly B Kolomeisky.css-eqlu8i{font-size:small;padding-left:4px;} (A B Kolomeisky, Anatoly Kolomeisky)

Publication Activity (10 Years)

Top Topics

Top Venues

Anatoly B Kolomeisky (A B Kolomeisky, Anatoly Kolomeisky)