Erwei Zuo

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 26

Top Topics

Machine Learning

Dna Methylation

Top Venues

Nature communications

Nature structural & molecular biology

This page only lists publications with an associated author ORCID identifier.

Publications

Guoling Li, Xue Dong, Jiamin Luo, Tanglong Yuan, Tong Li, Guoli Zhao, Hainan Zhang, Jingxing Zhou, Zhenhai Zeng, Shuna Cui, Haoqiang Wang, Yin Wang, Yuyang Yu, Yuan Yuan, Erwei Zuo, Chunlong Xu, Jinhai Huang, Yingsi Zhou
Engineering TadA ortholog-derived cytosine base editor without motif preference and adenosine activity limitation. Nature communications 15 (1) (2024)
Jiali Zhang, Zhenzhou Jiang, Xueyuan Zhang, Ziqun Yang, Jinjiao Wang, Jialing Chen, Li Chen, Minfang Song, Yanchun Zhang, Mei Huang, Shengmiao Chen, Xuexue Xiong, Yuetong Wang, Piliang Hao, Tiffany Horng, Min Zhuang, Liye Zhang, Erwei Zuo, Fang Bai, Jie Zheng, Haopeng Wang, Gaofeng Fan
THEMIS is a substrate and allosteric activator of SHP1, playing dual roles during T cell development. Nature structural & molecular biology 31 (1) (2024)
Long Xie, Hu Feng, Zhifang Li, Di Li, Xiali Yang, Tanglong Yuan, Nana Yan, Chenfei He, Jitan Zheng, Zhenrui Zuo, Yaxuan Zheng, Yaqi Cao, Yangqing Lu, Xing Yao Xiong, Erwei Zuo
Undetectable off-target effects induced by FokI catalytic domain in mouse embryos. Genome biology 25 (1) (2024)
Long Xie, Hu Feng, Zhifang Li, Di Li, Xiali Yang, Tanglong Yuan, Nana Yan, Chenfei He, Jitan Zheng, Zhenrui Zuo, Yaxuan Zheng, Yaqi Cao, Yangqing Lu, Xing Yao Xiong, Erwei Zuo
Undetectable off-target effects induced by FokI catalytic domain in mouse embryos. Genome biology 25 (1) (2024)
Tanglong Yuan, Leilei Wu, Shiyan Li, Jitan Zheng, Nana Li, Xiao Xiao, Haihang Zhang, Tianyi Fei, Long Xie, Zhenrui Zuo, Di Li, Pinzheng Huang, Hu Feng, Yaqi Cao, Nana Yan, Xinming Wei, Lei Shi, Yongsen Sun, Wu Wei, Yidi Sun, Erwei Zuo
Deep learning models incorporating endogenous factors beyond DNA sequences improve the prediction accuracy of base editing outcomes. Cell discovery 10 (1) (2024)
Kui Xu, Hu Feng, Haihang Zhang, Chenfei He, Huifang Kang, Tanglong Yuan, Lei Shi, Chikai Zhou, Guoying Hua, Yaqi Cao, Zhenrui Zuo, Erwei Zuo
Structure-guided discovery of highly efficient cytidine deaminases with sequence-context independence. Nature biomedical engineering (2024)
Long Xie, Hu Feng, Zhifang Li, Di Li, Xiali Yang, Tanglong Yuan, Nana Yan, Chenfei He, Jitan Zheng, Zhenrui Zuo, Yaxuan Zheng, Yaqi Cao, Yangqing Lu, Xing Yao Xiong, Erwei Zuo
Undetectable off-target effects induced by FokI catalytic domain in mouse embryos. Genome biology 25 (1) (2024)
Jiali Zhang, Zhenzhou Jiang, Xueyuan Zhang, Ziqun Yang, Jinjiao Wang, Jialing Chen, Li Chen, Minfang Song, Yanchun Zhang, Mei Huang, Shengmiao Chen, Xuexue Xiong, Yuetong Wang, Piliang Hao, Tiffany Horng, Min Zhuang, Liye Zhang, Erwei Zuo, Fang Bai, Jie Zheng, Haopeng Wang, Gaofeng Fan
THEMIS is a substrate and allosteric activator of SHP1, playing dual roles during T cell development. Nature structural & molecular biology 31 (1) (2024)
Tanglong Yuan, Leilei Wu, Shiyan Li, Jitan Zheng, Nana Li, Xiao Xiao, Haihang Zhang, Tianyi Fei, Long Xie, Zhenrui Zuo, Di Li, Pinzheng Huang, Hu Feng, Yaqi Cao, Nana Yan, Xinming Wei, Lei Shi, Yongsen Sun, Wu Wei, Yidi Sun, Erwei Zuo
Deep learning models incorporating endogenous factors beyond DNA sequences improve the prediction accuracy of base editing outcomes. Cell discovery 10 (1) (2024)
Long Xie, Hu Feng, Zhifang Li, Di Li, Xiali Yang, Tanglong Yuan, Nana Yan, Chenfei He, Jitan Zheng, Zhenrui Zuo, Yaxuan Zheng, Yaqi Cao, Yangqing Lu, Xing Yao Xiong, Erwei Zuo
Undetectable off-target effects induced by FokI catalytic domain in mouse embryos. Genome biology 25 (1) (2024)
Long Xie, Hu Feng, Zhifang Li, Di Li, Xiali Yang, Tanglong Yuan, Nana Yan, Chenfei He, Jitan Zheng, Zhenrui Zuo, Yaxuan Zheng, Yaqi Cao, Yangqing Lu, Xing Yao Xiong, Erwei Zuo
Undetectable off-target effects induced by FokI catalytic domain in mouse embryos. Genome biology 25 (1) (2024)
Jiali Zhang, Zhenzhou Jiang, Xueyuan Zhang, Ziqun Yang, Jinjiao Wang, Jialing Chen, Li Chen, Minfang Song, Yanchun Zhang, Mei Huang, Shengmiao Chen, Xuexue Xiong, Yuetong Wang, Piliang Hao, Tiffany Horng, Min Zhuang, Liye Zhang, Erwei Zuo, Fang Bai, Jie Zheng, Haopeng Wang, Gaofeng Fan
THEMIS is a substrate and allosteric activator of SHP1, playing dual roles during T cell development. Nature structural & molecular biology 31 (1) (2024)
Jiali Zhang, Zhenzhou Jiang, Xueyuan Zhang, Ziqun Yang, Jinjiao Wang, Jialing Chen, Li Chen, Minfang Song, Yanchun Zhang, Mei Huang, Shengmiao Chen, Xuexue Xiong, Yuetong Wang, Piliang Hao, Tiffany Horng, Min Zhuang, Liye Zhang, Erwei Zuo, Fang Bai, Jie Zheng, Haopeng Wang, Gaofeng Fan
THEMIS is a substrate and allosteric activator of SHP1, playing dual roles during T cell development. Nature structural & molecular biology (2024)
Tanglong Yuan, Leilei Wu, Shiyan Li, Jitan Zheng, Nana Li, Xiao Xiao, Haihang Zhang, Tianyi Fei, Long Xie, Zhenrui Zuo, Di Li, Pinzheng Huang, Hu Feng, Yaqi Cao, Nana Yan, Xinming Wei, Lei Shi, Yongsen Sun, Wu Wei, Yidi Sun, Erwei Zuo
Deep learning models incorporating endogenous factors beyond DNA sequences improve the prediction accuracy of base editing outcomes. Cell discovery 10 (1) (2024)
Long Xie, Yaqi Cao, Di Li, Mengxue Ma, Danrong Jiao, Hu Feng, Zhenrui Zuo, Erwei Zuo
Reducing off-target effects of DdCBEs by reversing amino acid charge near DNA interaction sites. Cell research (2024)
Qinchang Chen, Guohui Chuai, Haihang Zhang, Jin Tang, Liwen Duan, Huan Guan, Wenhui Li, Wannian Li, Jiaying Wen, Erwei Zuo, Qing Zhang, Qi Liu
Genome-wide CRISPR off-target prediction and optimization using RNA-DNA interaction fingerprints. Nature communications 14 (1) (2023)
Nana Yan, Hu Feng, Yongsen Sun, Ying Xin, Haihang Zhang, Hongjiang Lu, Jitan Zheng, Chenfei He, Zhenrui Zuo, Tanglong Yuan, Nana Li, Long Xie, Wu Wei, Yi-Di Sun, Erwei Zuo
Cytosine base editors induce off-target mutations and adverse phenotypic effects in transgenic mice. Nature communications 14 (1) (2023)
Nana Yan, Hu Feng, Yongsen Sun, Ying Xin, Haihang Zhang, Hongjiang Lu, Jitan Zheng, Chenfei He, Zhenrui Zuo, Tanglong Yuan, Nana Li, Long Xie, Wu Wei, Yi-Di Sun, Erwei Zuo
Cytosine base editors induce off-target mutations and adverse phenotypic effects in transgenic mice. Nature communications 14 (1) (2023)
Nana Yan, Hu Feng, Yongsen Sun, Ying Xin, Haihang Zhang, Hongjiang Lu, Jitan Zheng, Chenfei He, Zhenrui Zuo, Tanglong Yuan, Nana Li, Long Xie, Wu Wei, Yi-Di Sun, Erwei Zuo
Cytosine base editors induce off-target mutations and adverse phenotypic effects in transgenic mice. Nature communications 14 (1) (2023)
Nana Yan, Hu Feng, Yongsen Sun, Ying Xin, Haihang Zhang, Hongjiang Lu, Jitan Zheng, Chenfei He, Zhenrui Zuo, Tanglong Yuan, Nana Li, Long Xie, Wu Wei, Yi-Di Sun, Erwei Zuo
Cytosine base editors induce off-target mutations and adverse phenotypic effects in transgenic mice. Nature communications 14 (1) (2023)
Tanglong Yuan, Nana Yan, Tianyi Fei, Jitan Zheng, Juan Meng, Nana Li, Jing Liu, Haihang Zhang, Long Xie, Wenqin Ying, Di Li, Lei Shi, Yongsen Sun, Yongyao Li, Yi-Xue Li, Yi-Di Sun, Erwei Zuo
Optimization of C-to-G base editors with sequence context preference predictable by machine learning methods. Nature communications 12 (1) (2021)
Erwei Zuo, Yi-Di Sun, Wu Wei, Tanglong Yuan, Wenqin Ying, Hao Sun, Liyun Yuan, Lars M Steinmetz, Yixue Li, Hui Yang
GOTI, a method to identify genome-wide off-target effects of genome editing in mouse embryos. Nature protocols 15 (9) (2020)
Erwei Zuo, Yi-Di Sun, Tanglong Yuan, Bingbing He, Changyang Zhou, Wenqin Ying, Jing Liu, Wu Wei, Rong Zeng, Yi-Xue Li, Hui Yang
A rationally engineered cytosine base editor retains high on-target activity while reducing both DNA and RNA off-target effects. Nature methods 17 (6) (2020)
Sangsin Lee, Ning Ding, Yi-Di Sun, Tanglong Yuan, Jing Li, Qichen Yuan, Lizhong Liu, Jie Yang, Qian Wang, Anatoly B Kolomeisky, Isaac B Hilton, Erwei Zuo, Xue Gao
Single C-to-T substitution using engineered APOBEC3G-nCas9 base editors with minimum genome- and transcriptome-wide off-target effects. Science advances 6 (29) (2020)
Xinxin Huang, Junjun Lv, Yongqin Li, Shaoshuai Mao, Zhifang Li, Zhengyu Jing, Yidi Sun, Xiaoming Zhang, Shengxi Shen, Xinxin Wang, Minghui Di, Jianyang Ge, Xingxu Huang, Erwei Zuo, Tian Chi
Programmable C-to-U RNA editing using the human APOBEC3A deaminase. The EMBO journal 39 (22) (2020)
Xiang Lin, Haizhu Chen, Ying-Qian Lu, Shunyan Hong, Xinde Hu, Yanxia Gao, Lu-Lu Lai, Jin-Jing Li, Zishuai Wang, Wenqin Ying, Lixiang Ma, Ning Wang, Erwei Zuo, Hui Yang, Wan-Jin Chen
Base editing-mediated splicing correction therapy for spinal muscular atrophy. Cell research 30 (6) (2020)