Antonio Scialdone

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 14

Top Topics

Embryonic Stem Cells

High Throughput

Top Venues

Bioinformatics (Oxford, England)

Development (Cambridge, England)

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Marco Stock, Niclas Popp, Jonathan Fiorentino, Antonio Scialdone
Topological benchmarking of algorithms to infer gene regulatory networks from single-cell RNA-seq data. Bioinformatics (Oxford, England) 40 (5) (2024)
Marco Stock, Niclas Popp, Jonathan Fiorentino, Antonio Scialdone
Topological benchmarking of algorithms to infer gene regulatory networks from single-cell RNA-seq data. Bioinformatics (Oxford, England) 40 (5) (2024)
Marco Stock, Niclas Popp, Jonathan Fiorentino, Antonio Scialdone
Topological benchmarking of algorithms to infer gene regulatory networks from single-cell RNA-seq data. Bioinformatics (Oxford, England) 40 (5) (2024)
Anna Chanou, Matthias Weiβ, Karoline Holler, Atiqa Sajid, Tobias Straub, Jana Krietsch, Andrea Sanchi, Henning Ummethum, Clare S K Lee, Elisabeth Kruse, Manuel Trauner, Marcel Werner, Maxime Lalonde, Massimo Lopes, Antonio Scialdone, Stephan Hamperl
Single molecule MATAC-seq reveals key determinants of DNA replication origin efficiency. Nucleic acids research (2023)
Gabriele Lubatti, Marco Stock, Ane Iturbide, Mayra L Ruiz Tejada Segura, Melina Riepl, Richard C V Tyser, Anna Danese, Maria Colomé-Tatché, Fabian J Theis, Shankar Srinivas, Maria-Elena Torres-Padilla, Antonio Scialdone
CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data. Development (Cambridge, England) 150 (11) (2023)
Gabriele Lubatti, Marco Stock, Ane Iturbide, Mayra L Ruiz Tejada Segura, Melina Riepl, Richard C V Tyser, Anna Danese, Maria Colomé-Tatché, Fabian J Theis, Shankar Srinivas, Maria-Elena Torres-Padilla, Antonio Scialdone
CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data. Development (Cambridge, England) (2023)
Robert A Beagrie, Christoph J Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea Maria Chiariello, Simona Bianco, Yichao Li, Trenton Davis, Antonio Scialdone, Lonnie R Welch, Mario Nicodemi, Ana Pombo
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C. Nature methods (2023)
Jonathan Fiorentino, Antonio Scialdone
The role of cell geometry and cell-cell communication in gradient sensing. PLoS computational biology 18 (3) (2022)
Antonio Scialdone, Nicolas C Rivron
In preprints: improving and interrogating embryo models. Development (Cambridge, England) 149 (23) (2022)
Tsunetoshi Nakatani, Jiangwei Lin, Fei Ji, Andreas Ettinger, Julien Pontabry, Mikiko Tokoro, Luis Altamirano-Pacheco, Jonathan Fiorentino, Elmir Mahammadov, Yu Hatano, Capucine Van Rechem, Damayanti Chakraborty, Elias R Ruiz-Morales, Paola Y Arguello Pascualli, Antonio Scialdone, Kazuo Yamagata, Johnathan R Whetstine, Ruslan I Sadreyev, Maria-Elena Torres-Padilla
DNA replication fork speed underlies cell fate changes and promotes reprogramming. Nature genetics 54 (3) (2022)
Ana Lima, Gabriele Lubatti, Jörg Burgstaller, Di Hu, Alistair P Green, Aida Di Gregorio, Tamzin Zawadzki, Barbara Pernaute, Elmir Mahammadov, Salvador Perez-Montero, Marian Dore, Juan Miguel Sanchez, Sarah Bowling, Margarida Sancho, Thomas Kolbe, Mohammad M Karimi, David Carling, Nick S Jones, Shankar Srinivas, Antonio Scialdone, Tristan A Rodriguez
Cell competition acts as a purifying selection to eliminate cells with mitochondrial defects during early mouse development. Nature metabolism 3 (8) (2021)
Richard C V Tyser, Elmir Mahammadov, Shota Nakanoh, Ludovic Vallier, Antonio Scialdone, Shankar Srinivas
Single-cell transcriptomic characterization of a gastrulating human embryo. Nature 600 (7888) (2021)
Ane Iturbide, Mayra L Ruiz Tejeda Segura, Camille Noll, Kenji Schorpp, Ina Rothenaigner, Elias R Ruiz-Morales, Gabriele Lubatti, Ahmed Agami, Kamyar Hadian, Antonio Scialdone, Maria-Elena Torres-Padilla
Retinoic acid signaling is critical during the totipotency window in early mammalian development. Nature structural & molecular biology 28 (6) (2021)
Richard C V Tyser, Ximena Ibarra-Soria, Katie McDole, Satish Arcot Jayaram, Jonathan Godwin, Teun A H van den Brand, Antonio M A Miranda, Antonio Scialdone, Philipp J Keller, John C Marioni, Shankar Srinivas
Characterization of a common progenitor pool of the epicardium and myocardium. Science (New York, N.Y.) 371 (6533) (2021)