Mario Nicodemi

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 24

Top Topics

Dna Methylation

Genome Wide Identification

Top Venues

bioRxiv : the preprint server for biology

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Dominik Szabó, Vedran Franke, Simona Bianco, Mykhailo Y Batiuk, Eleanor J Paul, Alexander Kukalev, Ulrich G Pfisterer, Ibai Irastorza-Azcarate, Andrea M Chiariello, Samuel Demharter, Luna Zea-Redondo, Jose P López-Atalaya, Mario Nicodemi, Altuna Akalin, Konstantin Khodosevich, Mark A Ungless, Warren Winick-Ng, Ana Pombo
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons. bioRxiv : the preprint server for biology (2024)
Ibai Irastorza-Azcarate, Alexander Kukalev, Rieke Kempfer, Christoph J Thieme, Guido Mastrobuoni, Julia Markowski, Gesa Loof, Thomas M Sparks, Emily Brookes, Kedar Nath Natrajan, Stephan Sauer, Amanda G Fisher, Mario Nicodemi, Bing Ren, Roland F Schwarz, Stefan Kempa, Ana Pombo
Extensive folding variability between homologous chromosomes in mammalian cells. bioRxiv : the preprint server for biology (2024)
Dominik Szabó, Vedran Franke, Simona Bianco, Mykhailo Y Batiuk, Eleanor J Paul, Alexander Kukalev, Ulrich G Pfisterer, Ibai Irastorza-Azcarate, Andrea M Chiariello, Samuel Demharter, Luna Zea-Redondo, Jose P López-Atalaya, Mario Nicodemi, Altuna Akalin, Konstantin Khodosevich, Mark A Ungless, Warren Winick-Ng, Ana Pombo
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons. bioRxiv : the preprint server for biology (2024)
Dominik Szabó, Vedran Franke, Simona Bianco, Mykhailo Y Batiuk, Eleanor J Paul, Alexander Kukalev, Ulrich G Pfisterer, Ibai Irastorza-Azcarate, Andrea M Chiariello, Samuel Demharter, Luna Zea-Redondo, Jose P López-Atalaya, Mario Nicodemi, Altuna Akalin, Konstantin Khodosevich, Mark A Ungless, Warren Winick-Ng, Ana Pombo
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons. bioRxiv : the preprint server for biology (2024)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Mattia Conte, Tommaso Matteuzzi, Andrea Esposito, Andrea Maria Chiariello, Simona Bianco, Francesca Vercellone, Mario Nicodemi
Phase separation of ecDNA aggregates establishes in-trans contact domains boosting selective MYC regulatory interactions. bioRxiv : the preprint server for biology (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Robert A Beagrie, Christoph J Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea Maria Chiariello, Simona Bianco, Yichao Li, Trenton Davis, Antonio Scialdone, Lonnie R Welch, Mario Nicodemi, Ana Pombo
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C. Nature methods (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Mattia Conte, Ehsan Irani, Andrea Maria Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Mario Nicodemi
Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding. Nature communications 13 (1) (2022)
Naoki Kubo, Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu, James D Hocker, Mattia Conte, David U Gorkin, Miao Yu, Bin Li, Jesse R Dixon, Ming Hu, Mario Nicodemi, Huimin Zhao, Bing Ren
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation. Nature structural & molecular biology 28 (2) (2021)
Andrea M Chiariello, Simona Bianco, Andrea Esposito, Luca Fiorillo, Mattia Conte, Ehsan Irani, Francesco Musella, Alex Abraham, Antonella Prisco, Mario Nicodemi
Physical mechanisms of chromatin spatial organization. The FEBS journal (2021)
Luca Fiorillo, Francesco Musella, Mattia Conte, Rieke Kempfer, Andrea Maria Chiariello, Simona Bianco, Alexander Kukalev, Ibai Irastorza-Azcarate, Andrea Esposito, Alex Abraham, Antonella Prisco, Ana Pombo, Mario Nicodemi
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin. Nature methods 18 (5) (2021)
Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea Maria Chiariello, Andrea Esposito, Mario Nicodemi
Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation. Nature communications 11 (1) (2020)
Christina Paliou, Philine Guckelberger, Robert Schöpflin, Verena Heinrich, Andrea Esposito, Andrea M Chiariello, Simona Bianco, Carlo Annunziatella, Johannes Helmuth, Stefan Haas, Ivana Jerković, Norbert Brieske, Lars Wittler, Bernd Timmermann, Mario Nicodemi, Martin Vingron, Stefan Mundlos, Guillaume Andrey
Preformed chromatin topology assists transcriptional robustness of Shh during limb development. Proceedings of the National Academy of Sciences of the United States of America 116 (25) (2019)
Simona Bianco, Darío G Lupiáñez, Andrea Maria Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo, Stefan Mundlos, Mario Nicodemi
Polymer physics predicts the effects of structural variants on chromatin architecture. Nature genetics 50 (5) (2018)
A Marieke Oudelaar, James O J Davies, Lars L P Hanssen, Jelena M Telenius, Ron Schwessinger, Yu Liu, Jill M Brown, Damien J Downes, Andrea M Chiariello, Simona Bianco, Mario Nicodemi, Veronica J Buckle, Job Dekker, Douglas R Higgs, Jim R Hughes
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains. Nature genetics 50 (12) (2018)
Bjørt K Kragesteen, Malte Spielmann, Christina Paliou, Verena Heinrich, Robert Schöpflin, Andrea Esposito, Carlo Annunziatella, Simona Bianco, Andrea M Chiariello, Ivana Jerkovic, Izabela Harabula, Philine Guckelberger, Michael Pechstein, Lars Wittler, Wing-Lee Chan, Martin Franke, Darío G Lupiáñez, Katerina Kraft, Bernd Timmermann, Martin Vingron, Axel Visel, Mario Nicodemi, Stefan Mundlos, Guillaume Andrey
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis. Nature genetics 50 (10) (2018)