Yichao Li

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 27

Top Topics

Sickle Cell Disease

Gene Expression

Top Venues

Genome research

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research 34 (7) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research 34 (7) (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature 630 (8017) (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature 630 (8017) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature 630 (8017) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature 630 (8017) (2024)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Isaac, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David M Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. Genome research (2024)
Simon Garaudé, Romina Marone, Rosalba Lepore, Anna Devaux, Astrid Beerlage, Denis Seyres, Alessandro Dell' Aglio, Darius Juskevicius, Jessica Zuin, Thomas Burgold, Sisi Wang, Varun Katta, Garret Manquen, Yichao Li, Clément Larrue, Anna Camus, Izabela Durzynska, Lisa C Wellinger, Ian Kirby, Patrick H van Berkel, Christian Kunz, Jérôme Tamburini, Francesco Bertoni, Corinne C Widmer, Shengdar Q Tsai, Federico Simonetta, Stefanie Urlinger, Lukas T Jeker
Selective haematological cancer eradication with preserved haematopoiesis. Nature 630 (8017) (2024)
Thiyagaraj Mayuranathan, Gregory A Newby, Ruopeng Feng, Yu Yao, Kalin D Mayberry, Cicera R Lazzarotto, Yichao Li, Rachel M Levine, Nikitha Nimmagadda, Erin Dempsey, Guolian Kang, Shaina N Porter, Phillip A Doerfler, Jingjing Zhang, Yoonjeong Jang, Jingjing Chen, Henry William Bell, Merlin Crossley, Senthil Velan Bhoopalan, Akshay Sharma, John F Tisdale, Shondra M Pruett-Miller, Yong Cheng, Shengdar Q Tsai, David R Liu, Mitchell J Weiss, Jonathan S Yen
Potent and uniform fetal hemoglobin induction via base editing. Nature genetics (2023)
Robert A Beagrie, Christoph J Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea Maria Chiariello, Simona Bianco, Yichao Li, Trenton Davis, Antonio Scialdone, Lonnie R Welch, Mario Nicodemi, Ana Pombo
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C. Nature methods (2023)
Guanjue Xiang, Xi He, Belinda M Giardine, Kathryn J Weaver, Dylan J Taylor, Rajiv C McCoy, Camden Jansen, Cheryl A Keller, Alexander Q Wixom, April Cockburn, Amber Miller, Qian Qi, Yanghua He, Yichao Li, Jens Lichtenberg, Elisabeth F Heuston, Stacie M Anderson, Jing Luan, Marit W Vermunt, Feng Yue, Michael E G Sauria, Michael C Schatz, James Taylor, Berthold Göttgens, Jim R Hughes, Douglas R Higgs, Mitchell J Weiss, Yong Cheng, Gerd A Blobel, David Bodine, Yu Zhang, Qunhua Li, Shaun Mahony, Ross Cameron Hardison
Cross-species regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. bioRxiv : the preprint server for biology (2023)
Mackenzie Bloom, Ninad Oak, Rebekah Baskin-Doerfler, Ruopeng Feng, Ilaria Iacobucci, Pradyumna Baviskar, Xujie Zhao, Alexa N Stroh, Chunliang Li, Patrick Alexander Ozark, Heather S Sheppard, Yichao Li, Katherine C Verbist, Sabrin Albeituni, Daniel C Scott, Moeko T King, Shannon L McKinney Freeman, Mitchell J Weiss, Jun J Yang, Kim E Nichols
ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice. Blood advances (2023)
Megan Walker, Yichao Li, Antonio Morales-Hernandez, Qian Qi, Chaithanyarani Parupalli, Scott A Brown, Claiborne Christian, Wilson Kendrick Clements, Yong Cheng, Shannon L McKinney Freeman
An NFIX-mediated regulatory network governs the balance of hematopoietic stem and progenitor cells during hematopoiesis. Blood advances (2022)
Ruopeng Feng, Thiyagaraj Mayuranathan, Peng Huang, Phillip A Doerfler, Yichao Li, Yu Yao, Jingjing Zhang, Lance E Palmer, Kalin Mayberry, Georgios E Christakopoulos, Peng Xu, Chunliang Li, Yong Cheng, Gerd A Blobel, M Celeste Simon, Mitchell J Weiss
Activation of γ-globin expression by hypoxia-inducible factor 1α. Nature 610 (7933) (2022)
Nikolay L Malinin, GaHyun Lee, Cicera R Lazzarotto, Yichao Li, Zongli Zheng, Nhu T Nguyen, Matthew Liebers, Ved V Topkar, A John Iafrate, Long P Le, Martin J Aryee, J Keith Joung, Shengdar Q Tsai
Defining genome-wide CRISPR-Cas genome-editing nuclease activity with GUIDE-seq. Nature protocols 16 (12) (2021)
Li Cheng, Yichao Li, Qian Qi, Peng Xu, Ruopeng Feng, Lance E Palmer, Jingjing Chen, Ruiqiong Wu, Tiffany Yee, Jingjing Zhang, Yu Yao, Akshay Sharma, Ross Cameron Hardison, Mitchell J Weiss, Yong Cheng
Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression. Nature genetics 53 (6) (2021)
Phillip A Doerfler, Ruopeng Feng, Yichao Li, Lance E Palmer, Shaina N Porter, Henry William Bell, Merlin Crossley, Shondra M Pruett-Miller, Yong Cheng, Mitchell J Weiss
Activation of γ-globin gene expression by GATA1 and NF-Y in hereditary persistence of fetal hemoglobin. Nature genetics 53 (8) (2021)
Gregory A Newby, Jonathan S Yen, Kaitly J Woodard, Thiyagaraj Mayuranathan, Cicera R Lazzarotto, Yichao Li, Heather S Sheppard, Shaina N Porter, Yu Yao, Kalin Mayberry, Kelcee A Everette, Yoonjeong Jang, Christopher J Podracky, Elizabeth Thaman, Christophe Lechauve, Akshay Sharma, Jordana M Henderson, Michelle F Richter, Kevin Tianmeng Zhao, Shannon M Miller, Tina Wang, Luke W Koblan, Anton P McCaffrey, John F Tisdale, Theodosia A Kalfa, Shondra M Pruett-Miller, Shengdar Q Tsai, Mitchell J Weiss, David R Liu
Base editing of haematopoietic stem cells rescues sickle cell disease in mice. Nature 595 (7866) (2021)
Cicera R Lazzarotto, Nikolay L Malinin, Yichao Li, Ruochi Zhang, Yang Yang, GaHyun Lee, Eleanor Cowley, Yanghua He, Xin Lan, Kasey Jividen, Varun Katta, Natalia G Kolmakova, Christopher T Petersen, Qian Qi, Evgheni Strelcov, Samantha Maragh, Giedre Krenciute, Jian Ma, Yong Cheng, Shengdar Q Tsai
CHANGE-seq reveals genetic and epigenetic effects on CRISPR-Cas9 genome-wide activity. Nature biotechnology 38 (11) (2020)
Yichao Li, Maxwell Mullin, Yingnan Zhang, Frank Drews, Lonnie R Welch, Allan M Showalter
Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana. Plants (Basel, Switzerland) 9 (12) (2020)
Jeremy M Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Yichao Li, Silvia Libro, Sara Lustigman, Michelle L Michalski, Michael Paulini, Matthew B Rogers, Laura Teigen, Alan Twaddle, Lonnie R Welch, Matthew Berriman, Julie C Dunning Hotopp, Elodie Ghedin
Sex chromosome evolution in parasitic nematodes of humans. Nature communications 11 (1) (2020)
Sandro Spiller, Yichao Li, Matthias Blüher, Ralf Hoffmann
Diagnostic Accuracy of Protein Glycation Sites in Long-Term Controlled Patients with Type 2 Diabetes Mellitus and Their Prognostic Potential for Early Diagnosis. Pharmaceuticals (Basel, Switzerland) 11 (2) (2018)