Simona Bianco

Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 28

Top Topics

Transcription Factor

Dna Methylation

Top Venues

Nature communications

International journal of molecular sciences

Nature genetics

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Andrea M Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Andrea Fontana, Francesca Vercellone, Mattia Conte, Mario Nicodemi
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells. Nature communications 15 (1) (2024)
Andrea M Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Andrea Fontana, Francesca Vercellone, Mattia Conte, Mario Nicodemi
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells. Nature communications 15 (1) (2024)
Andrea M Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Andrea Fontana, Francesca Vercellone, Mattia Conte, Mario Nicodemi
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells. Nature communications 15 (1) (2024)
Dominik Szabó, Vedran Franke, Simona Bianco, Mykhailo Y Batiuk, Eleanor J Paul, Alexander Kukalev, Ulrich G Pfisterer, Ibai Irastorza-Azcarate, Andrea M Chiariello, Samuel Demharter, Luna Zea-Redondo, Jose P López-Atalaya, Mario Nicodemi, Altuna Akalin, Konstantin Khodosevich, Mark A Ungless, Warren Winick-Ng, Ana Pombo
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons. bioRxiv : the preprint server for biology (2024)
Dominik Szabó, Vedran Franke, Simona Bianco, Mykhailo Y Batiuk, Eleanor J Paul, Alexander Kukalev, Ulrich G Pfisterer, Ibai Irastorza-Azcarate, Andrea M Chiariello, Samuel Demharter, Luna Zea-Redondo, Jose P López-Atalaya, Mario Nicodemi, Altuna Akalin, Konstantin Khodosevich, Mark A Ungless, Warren Winick-Ng, Ana Pombo
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons. bioRxiv : the preprint server for biology (2024)
Andrea M Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Andrea Fontana, Francesca Vercellone, Mattia Conte, Mario Nicodemi
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells. Nature communications 15 (1) (2024)
Dominik Szabó, Vedran Franke, Simona Bianco, Mykhailo Y Batiuk, Eleanor J Paul, Alexander Kukalev, Ulrich G Pfisterer, Ibai Irastorza-Azcarate, Andrea M Chiariello, Samuel Demharter, Luna Zea-Redondo, Jose P López-Atalaya, Mario Nicodemi, Altuna Akalin, Konstantin Khodosevich, Mark A Ungless, Warren Winick-Ng, Ana Pombo
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons. bioRxiv : the preprint server for biology (2024)
Mattia Conte, Andrea Esposito, Francesca Vercellone, Alex Abraham, Simona Bianco
Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling. International journal of molecular sciences 24 (4) (2023)
Mattia Conte, Tommaso Matteuzzi, Andrea Esposito, Andrea Maria Chiariello, Simona Bianco, Francesca Vercellone, Mario Nicodemi
Phase separation of ecDNA aggregates establishes in-trans contact domains boosting selective MYC regulatory interactions. bioRxiv : the preprint server for biology (2023)
Mattia Conte, Andrea Esposito, Francesca Vercellone, Alex Abraham, Simona Bianco
Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling. International journal of molecular sciences 24 (4) (2023)
Mattia Conte, Andrea Esposito, Francesca Vercellone, Alex Abraham, Simona Bianco
Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling. International journal of molecular sciences 24 (4) (2023)
Andrea Maria Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Francesca Vercellone, Mattia Conte, Andrea Fontana, Mario Nicodemi
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells. bioRxiv : the preprint server for biology (2023)
Mattia Conte, Andrea Esposito, Francesca Vercellone, Alex Abraham, Simona Bianco
Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling. International journal of molecular sciences 24 (4) (2023)
Robert A Beagrie, Christoph J Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea Maria Chiariello, Simona Bianco, Yichao Li, Trenton Davis, Antonio Scialdone, Lonnie R Welch, Mario Nicodemi, Ana Pombo
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C. Nature methods (2023)
Mattia Conte, Andrea Esposito, Francesca Vercellone, Alex Abraham, Simona Bianco
Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling. International journal of molecular sciences 24 (4) (2023)
Mattia Conte, Ehsan Irani, Andrea Maria Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Mario Nicodemi
Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding. Nature communications 13 (1) (2022)
Andrea Esposito, Alex Abraham, Mattia Conte, Francesca Vercellone, Antonella Prisco, Simona Bianco, Andrea Maria Chiariello
The Physics of DNA Folding: Polymer Models and Phase-Separation. Polymers 14 (9) (2022)
Loredana Poeta, Michela Malacarne, Agnese Padula, Denise Drongitis, Lucia Verrillo, Maria Brigida Lioi, Andrea Maria Chiariello, Simona Bianco, Mario Nicodemi, Maria Piccione, Emanuela Salzano, Domenico A Coviello, Maria Giuseppina Miano
Further Delineation of Duplications of ARX Locus Detected in Male Patients with Varying Degrees of Intellectual Disability. International journal of molecular sciences 23 (6) (2022)
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea Maria Chiariello, Miao Yu, Rong Hu, Melodi Tastemel, Ivan Juric, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains. Nature genetics 53 (7) (2021)
Naoki Kubo, Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu, James D Hocker, Mattia Conte, David U Gorkin, Miao Yu, Bin Li, Jesse R Dixon, Ming Hu, Mario Nicodemi, Huimin Zhao, Bing Ren
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation. Nature structural & molecular biology 28 (2) (2021)
Warren Winick-Ng, Alexander Kukalev, Izabela Harabula, Luna Zea-Redondo, Dominik Szabó, Mandy Meijer, Leonid Serebreni, Yingnan Zhang, Simona Bianco, Andrea Maria Chiariello, Ibai Irastorza-Azcarate, Christoph J Thieme, Thomas M Sparks, Sílvia Carvalho, Luca Fiorillo, Francesco Musella, Ehsan Irani, Elena Torlai Triglia, Aleksandra A Kolodziejczyk, Andreas Abentung, Galina Apostolova, Eleanor J Paul, Vedran Franke, Rieke Kempfer, Altuna Akalin, Sarah A Teichmann, Georg Dechant, Mark A Ungless, Mario Nicodemi, Lonnie Welch, Gonçalo Castelo-Branco, Ana Pombo
Cell-type specialization is encoded by specific chromatin topologies. Nature 599 (7886) (2021)
Luca Fiorillo, Francesco Musella, Mattia Conte, Rieke Kempfer, Andrea Maria Chiariello, Simona Bianco, Alexander Kukalev, Ibai Irastorza-Azcarate, Andrea Esposito, Alex Abraham, Antonella Prisco, Ana Pombo, Mario Nicodemi
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin. Nature methods 18 (5) (2021)
Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea Maria Chiariello, Andrea Esposito, Mario Nicodemi
Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation. Nature communications 11 (1) (2020)
Christina Paliou, Philine Guckelberger, Robert Schöpflin, Verena Heinrich, Andrea Esposito, Andrea M Chiariello, Simona Bianco, Carlo Annunziatella, Johannes Helmuth, Stefan Haas, Ivana Jerković, Norbert Brieske, Lars Wittler, Bernd Timmermann, Mario Nicodemi, Martin Vingron, Stefan Mundlos, Guillaume Andrey
Preformed chromatin topology assists transcriptional robustness of Shh during limb development. Proceedings of the National Academy of Sciences of the United States of America 116 (25) (2019)
Gaetano Ivan Dellino, Fernando Palluzzi, Andrea Maria Chiariello, Rossana Piccioni, Simona Bianco, Laura Furia, Giulia De Conti, Britta A M Bouwman, Giorgio E M Melloni, Davide Guido, Luciano Giacò, Lucilla Luzi, Davide Cittaro, Mario Faretta, Mario Nicodemi, Nicola Crosetto, Pier Giuseppe Pelicci
Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations. Nature genetics 51 (6) (2019)
Simona Bianco, Darío G Lupiáñez, Andrea Maria Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo, Stefan Mundlos, Mario Nicodemi
Polymer physics predicts the effects of structural variants on chromatin architecture. Nature genetics 50 (5) (2018)
A Marieke Oudelaar, James O J Davies, Lars L P Hanssen, Jelena M Telenius, Ron Schwessinger, Yu Liu, Jill M Brown, Damien J Downes, Andrea M Chiariello, Simona Bianco, Mario Nicodemi, Veronica J Buckle, Job Dekker, Douglas R Higgs, Jim R Hughes
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains. Nature genetics 50 (12) (2018)
Bjørt K Kragesteen, Malte Spielmann, Christina Paliou, Verena Heinrich, Robert Schöpflin, Andrea Esposito, Carlo Annunziatella, Simona Bianco, Andrea M Chiariello, Ivana Jerkovic, Izabela Harabula, Philine Guckelberger, Michael Pechstein, Lars Wittler, Wing-Lee Chan, Martin Franke, Darío G Lupiáñez, Katerina Kraft, Bernd Timmermann, Martin Vingron, Axel Visel, Mario Nicodemi, Stefan Mundlos, Guillaume Andrey
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis. Nature genetics 50 (10) (2018)