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Barbara Elizabeth Engelhardt (Barbara E Engelhardt)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 24

Top Venues

Nature methods

Nature communications

bioRxiv : the preprint server for biology

Genome research

Princeton University

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Princeton University Sep 1o 2014

United States

Assistant Professor :: Computer Science

Education History

University of California Berkeley

United States

PHD :: EECS

Publications

Andrew Jones, Diana Cai, Didong Li, Barbara Elizabeth Engelhardt
Optimizing the design of spatial genomic studies. bioRxiv : the preprint server for biology (2023)
Andrew Jones, Diana Cai, Didong Li, Barbara Elizabeth Engelhardt
Optimizing the design of spatial genomic studies. bioRxiv : the preprint server for biology (2023)
Andrew Jones, F William Townes, Didong Li, Barbara Elizabeth Engelhardt
Alignment of spatial genomics data using deep Gaussian processes. Nature methods (2023)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods 20 (2) (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods (2022)
Archit Verma, Siddhartha G Jena, Danielle R Isakov, Kazuhiro Aoki, Jared E Toettcher, Barbara Elizabeth Engelhardt
A self-exciting point process to study multicellular spatial signaling patterns. Proceedings of the National Academy of Sciences of the United States of America 118 (32) (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods 20 (2) (2022)
Siddhartha G Jena, Alexander G Goglia, Barbara Elizabeth Engelhardt
Towards 'end-to-end' analysis and understanding of biological timecourse data. The Biochemical journal 479 (11) (2022)
Ariel D H Gewirtz, F William Townes, Barbara Elizabeth Engelhardt
Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues. Life science alliance 5 (12) (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods 20 (2) (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods 20 (2) (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods 20 (2) (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods (2022)
F William Townes, Barbara Elizabeth Engelhardt
Nonnegative spatial factorization applied to spatial genomics. Nature methods 20 (2) (2022)
Jordan T Ash, Gregory Darnell, Daniel Munro, Barbara Elizabeth Engelhardt
Joint analysis of expression levels and histological images identifies genes associated with tissue morphology. Nature communications 12 (1) (2021)
Bianca Dumitrascu, Soledad Villar, Dustin G Mixon, Barbara Elizabeth Engelhardt
Optimal marker gene selection for cell type discrimination in single cell analyses. Nature communications 12 (1) (2021)
Jonathan Hsijing Lu, Bianca Dumitrascu, Ian C McDowell, Brian Jo, Alejandro Barrera, Linda K Hong, Sarah M Leichter, Timothy E Reddy, Barbara Elizabeth Engelhardt
Causal network inference from gene transcriptional time-series response to glucocorticoids. PLoS computational biology 17 (1) (2021)
Rebecca Elyanow, Bianca Dumitrascu, Barbara Elizabeth Engelhardt, Benjamin J Raphael
netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis. Genome research 30 (2) (2020)
Li-Fang Cheng, Bianca Dumitrascu, Gregory Darnell, Corey Chivers, Michael Draugelis, Kai Li, Barbara Elizabeth Engelhardt
Sparse multi-output Gaussian processes for online medical time series prediction. BMC medical informatics and decision making 20 (1) (2020)
Meritxell Oliva, Manuel Muñoz-Aguirre, Sarah Kim-Hellmuth, Valentin Wucher, Ariel D H Gewirtz, Daniel J Cotter, Princy Parsana, Silva Kasela, Brunilda Balliu, Ana Viñuela, Stephane E Castel, Pejman Mohammadi, François Aguet, Yuxin Zou, Ekaterina A Khramtsova, Andrew D Skol, Diego Garrido-Martín, Ferran Reverter, Andrew Anand Brown, Patrick Evans, Eric R Gamazon, Anthony Payne, Rodrigo Bonazzola, Alvaro N Barbeira, Andrew R Hamel, Angel Martinez-Perez, José Manuel Soria, null null, Brandon L Pierce, Matthew Stephens, Eleazar Eskin, Emmanouil T Dermitzakis, Ayellet V Segrè, Hae Kyung Im, Barbara Elizabeth Engelhardt, Kristin G Ardlie, Stephen B Montgomery, Alexis J Battle, Tuuli Lappalainen, Roderic Guigo, Barbara E Stranger
The impact of sex on gene expression across human tissues. Science (New York, N.Y.) 369 (6509) (2020)
Derek Aguiar, Li-Fang Cheng, Bianca Dumitrascu, Fantine Mordelet, Athma A Pai, Barbara Elizabeth Engelhardt
Bayesian nonparametric discovery of isoforms and individual specific quantification. Nature communications 9 (1) (2018)
Otavio Cabral-Marques, Alexandre Marques, Lasse Melvær Giil, Roberta De Vito, Judith Rademacher, Jeannine Günther, Tanja Lange, Jens Y Humrich, Sebastian Klapa, Susanne Schinke, Lena F Schimke, Gabriele Marschner, Silke Pitann, Sabine Adler, Ralf Dechend, Dominik N Müller, Ioana Braicu, Jalid Sehouli, Kai Schulze-Forster, Tobias Trippel, Carmen Scheibenbogen, Annetine Staff, Peter R Mertens, Madlen Löbel, Justin Mastroianni, Corinna Plattfaut, Frank Gieseler, Duska Dragun, Barbara Elizabeth Engelhardt, Maria J Fernandez-Cabezudo, Hans D Ochs, Basel K Al-Ramadi, Peter Lamprecht, Antje Mueller, Harald Heidecke, Gabriela Riemekasten
GPCR-specific autoantibody signatures are associated with physiological and pathological immune homeostasis. Nature communications 9 (1) (2018)

Barbara Elizabeth Engelhardt.css-eqlu8i{font-size:small;padding-left:4px;} (Barbara E Engelhardt)

Publication Activity (10 Years)

Top Topics

Top Venues

Barbara Elizabeth Engelhardt (Barbara E Engelhardt)