Stephen B Montgomery (Stephen Montgomery)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 24

Top Venues

Nature communications

Nature genetics

Nature

Science (New York, N.Y.)

Stanford University

University of British Columbia (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stanford University Jul 1o 2011

United States

Associate Professor :: Pathology; Genetics

Education History

University of British Columbia Sep 1o 2002 - Oct 1o 2006

Canada

PHD :: Genetics

Publications

Paul J McLaren, Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoc, Sara Cristinelli, Cristina Pomilla, István Bartha, Christian W Thorball, Riley H Tough, Paolo Angelino, Cher S Kiar, Tommy Carstensen, Segun Fatumo, Tarryn Porter, Isobel Jarvis, William C Skarnes, Andrew R Bassett, Marianne K DeGorter, Mohana Prasad Sathya Moorthy, Jeffrey F Tuff, Eun-Young Kim, Miriam Walter, Lacy M Simons, Arman Bashirova, Susan P Buchbinder, Mary N Carrington, Andrea Cossarizza, Andrea De Luca, James J Goedert, David B Goldstein, David W Haas, Steven M Goodreau, Eric O Johnson, Pontiano Kaleebu, William Kilembe, Gregory D Kirk, Neeltje A Kootstra, Alex H Kral, Olivier Lambotte, Ma Luo, Simon Mallal, Javier Martinez-Picado, Laurence Meyer, José M Miro, Pravi Moodley, Ayesha A Motala, James I Mullins, Kireem Nam, Niels Obel, Fraser Pirie, Francis A Plummer, Guido Poli, Matthew A Price, Andri Rauch, Ioannis Theodorou, Alexandra Trkola, Bruce D Walker, Cheryl A Winkler, Jean-François Zagury, Stephen B Montgomery, Angela Ciuffi, Judd F Hultquist, Steven M Wolinsky, Gordon Dougan, Andrew M L Lever, Deepti Gurdasani, Harriet C T Groom, Manjinder S Sandhu, Jacques Fellay
Author Correction: Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature (2023)
Paul J McLaren, Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoc, Sara Cristinelli, Cristina Pomilla, István Bartha, Christian W Thorball, Riley H Tough, Paolo Angelino, Cher S Kiar, Tommy Carstensen, Segun Fatumo, Tarryn Porter, Isobel Jarvis, William C Skarnes, Andrew R Bassett, Marianne K DeGorter, Mohana Prasad Sathya Moorthy, Jeffrey F Tuff, Eun-Young Kim, Miriam Walter, Lacy M Simons, Arman Bashirova, Susan P Buchbinder, Mary N Carrington, Andrea Cossarizza, Andrea De Luca, James J Goedert, David B Goldstein, David W Haas, Steven M Goodreau, Eric O Johnson, Pontiano Kaleebu, William Kilembe, Gregory D Kirk, Neeltje A Kootstra, Alex H Kral, Olivier Lambotte, Ma Luo, Simon Mallal, Javier Martinez-Picado, Laurence Meyer, José M Miro, Pravi Moodley, Ayesha A Motala, James I Mullins, Kireem Nam, Niels Obel, Fraser Pirie, Francis A Plummer, Guido Poli, Matthew A Price, Andri Rauch, Ioannis Theodorou, Alexandra Trkola, Bruce D Walker, Cheryl A Winkler, Jean-François Zagury, Stephen B Montgomery, Angela Ciuffi, Judd F Hultquist, Steven M Wolinsky, Gordon Dougan, Andrew M L Lever, Deepti Gurdasani, Harriet C T Groom, Manjinder S Sandhu, Jacques Fellay
Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature (2023)
Margaret G Guo, David L Reynolds, Cheen Euong Ang, Yingfei Liu, Yang Zhao, Laura K H Donohue, Zurab Siprashvili, Xue Yang, Yongjin Yoo, Smarajit Mondal, Audrey Hong, Jessica Kain, Lindsey Meservey, Tania Fabo, Ibtihal Elfaki, Laura N Kellman, Nathan S Abell, Yash Pershad, Vafa Bayat, Payam Etminani, Mark Holodniy, Daniel H Geschwind, Stephen B Montgomery, Laramie E Duncan, Alexander Eckehart Urban, Russ B Altman, Marius Wernig, Paul A Khavari
Integrative analyses highlight functional regulatory variants associated with neuropsychiatric diseases. Nature genetics (2023)
Hamilton Se-Hwee Oh, Jarod Evert Rutledge, Daniel Nachun, Róbert Pálovics, Olamide Abiose, Patricia Moran-Losada, Divya Channappa, Deniz Yagmur Urey, Kate Kim, Yun Ju Sung, Lihua Wang, Jigyasha Timsina, Daniel Western, Menghan Liu, Patsy Kohlfeld, John Budde, Edward N Wilson, Yann Le Guen, Taylor M Maurer, Michael Haney, Andrew C Yang, Zihuai He, Michael D Greicius, Katrin I Andreasson, Sanish Sathyan, Erica F Weiss, Sofiya Milman, Nir Barzilai, Carlos Cruchaga, Anthony D Wagner, Elizabeth Mormino, Benoit Lehallier, Victor W Henderson, Frank M Longo, Stephen B Montgomery, Tony Wyss-Coray
Organ aging signatures in the plasma proteome track health and disease. Nature 624 (7990) (2023)
Marianne K DeGorter, Page C Goddard, Emre Karakoc, Soumya Kundu, Stephanie M Yan, Daniel Nachun, Nathan S Abell, Matthew Aguirre, Tommy Carstensen, Ziwei Chen, Matthew Durrant, Vikranth R Dwaracherla, Karen Feng, Michael J Gloudemans, Naiomi Hunter, Mohana P S Moorthy, Cristina Pomilla, Kameron B Rodrigues, Courtney J Smith, Kevin S Smith, Rachel A Ungar, Brunilda Balliu, Jacques Fellay, Paul Flicek, Paul J McLaren, Brenna M Henn, Rajiv C McCoy, Lauren Alpert Sugden, Anshul Kundaje, Manjinder S Sandhu, Deepti Gurdasani, Stephen B Montgomery
Transcriptomics and chromatin accessibility in multiple African population samples. bioRxiv : the preprint server for biology (2023)
Nathan S Abell, Marianne K DeGorter, Michael J Gloudemans, Emily Greenwald, Kevin S Smith, Zihuai He, Stephen B Montgomery
Multiple causal variants underlie genetic associations in humans. Science (New York, N.Y.) 375 (6586) (2022)
Qin Li, Michael J Gloudemans, Jonathan M Geisinger, Boming Fan, François Aguet, Tao Sun, Gokul Ramaswami, Yang I Li, Jin-Biao Ma, Jonathan K Pritchard, Stephen B Montgomery, Jin Billy Li
RNA editing underlies genetic risk of common inflammatory diseases. Nature 608 (7923) (2022)
Marc Jan Bonder, Craig Smail, Michael J Gloudemans, Laure Frésard, David Jakubosky, Matteo D'Antonio, Xin Li, Nicole M Ferraro, Ivan Carcamo-Orive, Bogdan Mirauta, Daniel D Seaton, Na Cai, Dara Vakili, Danilo Horta, Chunli Zhao, Diane B Zastrow, Devon E Bonner, null null, null null, null null, null null, Matthew T Wheeler, Helena Kilpinen, Joshua W Knowles, Erin N Smith, Kelly A Frazer, Stephen B Montgomery, Oliver Stegle
Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics. Nature genetics 53 (3) (2021)
Zihuai He, Linxi Liu, Chen Wang, Yann Le Guen, Justin Lee, Stephanie M Gogarten, Fred Lu, Stephen B Montgomery, Hua Tang, Edwin K Silverman, Michael H Cho, Michael Greicius, Iuliana Ionita-Laza
Identification of putative causal loci in whole-genome sequencing data via knockoff statistics. Nature communications 12 (1) (2021)
Justin Anthony Chen, Yanli Hou, Krishna M Roskin, Daniel A Arber, Charles D Bangs, Linda B Baughn, Athena M Cherry, Mark D Ewalt, Andrew Z Fire, Laure Frésard, Hutton M Kearney, Stephen B Montgomery, Robert S Ohgami, Kathryn E Pearce, Beth A Pitel, Jason D Merker, Jason Gotlib
Lymphoid blast transformation in an MPN with BCR-JAK2 treated with ruxolitinib: putative mechanisms of resistance. Blood advances 5 (17) (2021)
M Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J Gloudemans, Laure Frésard, Jeffrey M Granja, Bryan H Louie, Tiffany Eulalio, Shadi Shams, S Tansu Bagdatli, Maxwell R Mumbach, Boxiang Liu, Kathleen S Montine, William J Greenleaf, Anshul Kundaje, Stephen B Montgomery, Howard Y Chang, Thomas J Montine
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer's and Parkinson's diseases. Nature genetics 52 (11) (2020)
Nicole R Gay, Michael Gloudemans, Margaret L Antonio, Nathan S Abell, Brunilda Balliu, YoSon Park, Alicia R Martin, Shaila Musharoff, Abhiram S Rao, François Aguet, Alvaro N Barbeira, Rodrigo Bonazzola, Farhad Hormozdiari, null null, Kristin G Ardlie, Christopher D Brown, Hae Kyung Im, Tuuli Lappalainen, Xiaoquan Wen, Stephen B Montgomery
Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx. Genome biology 21 (1) (2020)
David Jakubosky, Matteo D'Antonio, Marc Jan Bonder, Craig Smail, Margaret K R Donovan, William W Young Greenwald, Hiroko Matsui, null null, Agnieszka D'Antonio-Chronowska, Oliver Stegle, Erin N Smith, Stephen B Montgomery, Christopher DeBoever, Kelly A Frazer
Properties of structural variants and short tandem repeats associated with gene expression and complex traits. Nature communications 11 (1) (2020)
Nicole M Ferraro, Benjamin J Strober, Jonah Einson, Nathan S Abell, François Aguet, Alvaro N Barbeira, Margot Brandt, Maja Bucan, Stephane E Castel, Joe R Davis, Emily Greenwald, Gaelen T Hess, Austin T Hilliard, Rachel L Kember, Bence Kotis, YoSon Park, Gina Peloso, Shweta Ramdas, Alexandra J Scott, Craig Smail, Emily K Tsang, Seyedeh Maryam Zekavat, Marcello Ziosi, null Aradhana, null null, Kristin G Ardlie, Themistocles L Assimes, Michael C Bassik, Christopher D Brown, Adolfo Correa, Ira Hall, Hae Kyung Im, Xin Li, Pradeep Natarajan, null null, Tuuli Lappalainen, Pejman Mohammadi, Stephen B Montgomery, Alexis J Battle
Transcriptomic signatures across human tissues identify functional rare genetic variation. Science (New York, N.Y.) 369 (6509) (2020)
Mohsen Fathzadeh, Jiehan Li, Abhiram Rao, Naomi L Cook, Indumathi Chennamsetty, Marcus M Seldin, Xiang Zhou, Panjamaporn Sangwung, Michael J Gloudemans, Mark Keller, Alan D Attie, Jing Yang, Martin Wabitsch, Ivan Carcamo-Orive, Yuko Tada, Aldons J Lusis, Myung Kyun Shin, Cliona M Molony, Tracey McLaughlin, Gerald Reaven, Stephen B Montgomery, Dermot F Reilly, Thomas Quertermous, Erik Ingelsson, Joshua W Knowles
FAM13A affects body fat distribution and adipocyte function. Nature communications 11 (1) (2020)
Meritxell Oliva, Manuel Muñoz-Aguirre, Sarah Kim-Hellmuth, Valentin Wucher, Ariel D H Gewirtz, Daniel J Cotter, Princy Parsana, Silva Kasela, Brunilda Balliu, Ana Viñuela, Stephane E Castel, Pejman Mohammadi, François Aguet, Yuxin Zou, Ekaterina A Khramtsova, Andrew D Skol, Diego Garrido-Martín, Ferran Reverter, Andrew Anand Brown, Patrick Evans, Eric R Gamazon, Anthony Payne, Rodrigo Bonazzola, Alvaro N Barbeira, Andrew R Hamel, Angel Martinez-Perez, José Manuel Soria, null null, Brandon L Pierce, Matthew Stephens, Eleazar Eskin, Emmanouil T Dermitzakis, Ayellet V Segrè, Hae Kyung Im, Barbara Elizabeth Engelhardt, Kristin G Ardlie, Stephen B Montgomery, Alexis J Battle, Tuuli Lappalainen, Roderic Guigo, Barbara E Stranger
The impact of sex on gene expression across human tissues. Science (New York, N.Y.) 369 (6509) (2020)
David Jakubosky, Erin N Smith, Matteo D'Antonio, Marc Jan Bonder, William W Young Greenwald, Agnieszka D'Antonio-Chronowska, Hiroko Matsui, null null, Oliver Stegle, Stephen B Montgomery, Christopher DeBoever, Kelly A Frazer
Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats. Nature communications 11 (1) (2020)
Boxiang Liu, Stephen B Montgomery
Identifying causal variants and genes using functional genomics in specialized cell types and contexts. Human genetics 139 (1) (2019)
Laure Frésard, Craig Smail, Nicole M Ferraro, Nicole A Teran, Xin Li, Kevin S Smith, Devon Bonner, Kristin D Kernohan, Shruti Marwaha, Zachary Zappala, Brunilda Balliu, Joe R Davis, Boxiang Liu, Cameron J Prybol, Jennefer N Kohler, Diane B Zastrow, Chloe M Reuter, Dianna G Fisk, Megan E Grove, Jean M Davidson, Taila Hartley, Ruchi Joshi, Benjamin J Strober, Sowmithri Utiramerur, null null, null null, Lars Lind, Erik Ingelsson, Alexis Battle, Gill Bejerano, Jonathan A Bernstein, Euan A Ashley, Kym M Boycott, Jason D Merker, Matthew T Wheeler, Stephen B Montgomery
Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts. Nature medicine 25 (6) (2019)
Robert C Wirka, Dhananjay Wagh, David T Paik, Milos Pjanic, Trieu Nguyen, Clint L Miller, Ramen Kundu, Manabu Nagao, John Coller, Tiffany K Koyano, Robyn Fong, Y Joseph Woo, Boxiang Liu, Stephen B Montgomery, Joseph C Wu, Kuixi Zhu, Rui Chang, Melissa Alamprese, Michelle D Tallquist, Juyong B Kim, Thomas Quertermous
Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis. Nature medicine 25 (8) (2019)
Boxiang Liu, Michael J Gloudemans, Abhiram S Rao, Erik Ingelsson, Stephen B Montgomery
Abundant associations with gene expression complicate GWAS follow-up. Nature genetics 51 (5) (2019)
Boxiang Liu, Melissa A Calton, Nathan S Abell, Gillie Benchorin, Michael J Gloudemans, Ming Chen, Jane Hu, Xin Li, Brunilda Balliu, Dean Bok, Stephen B Montgomery, Douglas Vollrath
Genetic analyses of human fetal retinal pigment epithelium gene expression suggest ocular disease mechanisms. Communications biology 2 (2019)
Pablo Cordero, Victoria N Parikh, Elizabeth T Chin, Ayca Erbilgin, Michael J Gloudemans, Ching Shang, Yong Huang, Alex Chia Yu Chang, Kevin S Smith, Frederick Dewey, Kathia Zaleta, Michael Morley, Jeff Brandimarto, Nicole Glazer, Daryl Waggott, Aleksandra Pavlovic, Mingming Zhao, Christine S Moravec, W H Wilson Tang, Jamie Skreen, Christine Malloy, Sridhar Hannenhalli, Hongzhe Li, Scott Ritter, Mingyao Li, Daniel Bernstein, Andrew Connolly, Hakon Hakonarson, Aldons J Lusis, Kenneth B Margulies, Anna A Depaoli-Roach, Stephen B Montgomery, Matthew T Wheeler, Thomas Cappola, Euan A Ashley
Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure. Nature communications 10 (1) (2019)
Laure Frésard, Stephen B Montgomery
Diagnosing rare diseases after the exome. Cold Spring Harbor molecular case studies 4 (6) (2018)

Stephen B Montgomery.css-eqlu8i{font-size:small;padding-left:4px;} (Stephen Montgomery)

Publication Activity (10 Years)

Top Topics

Top Venues

Stephen B Montgomery (Stephen Montgomery)