Bhavya Papudeshi

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Venues

bioRxiv : the preprint server for biology

Briefings in bioinformatics

mBio

Scientific reports

Indiana University

Indiana University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Indiana University Aug 17 2017

United States

Bioinformatician :: National Center for Genome Analysis Support,

Education History

Indiana University Aug 15 2019

United States

PHD :: Department of Informatics

San Diego State University Aug 11 2014 - May 12 2017

United States

MSC :: Department of Bioinformatics and Medical Informatics

Vellore Insitute of Technology Aug 01 2010 - May 05 2014

India

BSC :: Department of Biotechnology

Publications

Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
Vijini G Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R Grigson, George Spyro Bouras, Rosa E Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A Dinsdale, Robert A Edwards
Solving genomic puzzles: computational methods for metagenomic binning. Briefings in bioinformatics 25 (5) (2024)
Susanna R Grigson, Sarah K Giles, Robert A Edwards, Bhavya Papudeshi
Knowing and Naming: Phage Annotation and Nomenclature for Phage Therapy. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 77 (Supplement_5) (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Sarah K Giles, Susanna R Grigson, Przemyslaw Decewicz, George Spyro Bouras, Ryan D Hesse, Laura K Inglis, Abbey L K Hutton, Elizabeth A Dinsdale, Robert A Edwards
Phables: from fragmented assemblies to high-quality bacteriophage genomes. bioRxiv : the preprint server for biology (2023)
Jody C McKerral, Bhavya Papudeshi, Laura K Inglis, Michael J Roach, Przemyslaw Decewicz, Katelyn McNair, Antoni Luque, Elizabeth A Dinsdale, Robert A Edwards
The Promise and Pitfalls of Prophages. bioRxiv : the preprint server for biology (2023)
Michael P Doane, Michael B Reed, Jody McKerral, Laís Farias Oliveira Lima, Megan Morris, Asha Z Goodman, Shaili Johri, Bhavya Papudeshi, Taylor Dillon, Abigail C Turnlund, Meredith Peterson, Maria Mora, Rafael de la Parra Venegas, Richard Pillans, Christoph A Rohner, Simon J Pierce, Christine G Legaspi, Gonzalo Araujo, Deni Ramirez-Macias, Robert A Edwards, Elizabeth A Dinsdale
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome. Scientific reports 13 (1) (2023)
Jody C McKerral, Bhavya Papudeshi, Laura K Inglis, Michael J Roach, Przemyslaw Decewicz, Katelyn McNair, Antoni Luque, Elizabeth A Dinsdale, Robert A Edwards
The Promise and Pitfalls of Prophages. bioRxiv : the preprint server for biology (2023)
Bhavya Papudeshi, Alejandro A Vega, Cole Souza, Sarah K Giles, Vijini G Mallawaarachchi, Michael J Roach, Michelle An, Nicole Jacobson, Katelyn McNair, Maria Fernanda Mora, Karina Pastrana, Christopher Leigh, Clarice Cram, Will S Plewa, Susanna R Grigson, George Bouras, Przemys Çaw Decewicz, Antoni Luque, Lindsay Droit, Scott A Handley, Anca M Segall, Elizabeth A Dinsdale, Robert A Edwards
Novel crAssphage isolates exhibit conserved gene order and purifying selection of the host specificity protein. bioRxiv : the preprint server for biology (2023)
Bhavya Papudeshi, Douglas B Rusch, Libusha Kelly, Curtis M Lively, Robert A Edwards, Farrah Bashey
Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii. mBio (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Asha Z Goodman, Bhavya Papudeshi, Michael P Doane, Maria Mora, Emma Kerr, Melissa Torres, Jennifer Nero Moffatt, Lais Lima, Andrew P Nosal, Elizabeth Dinsdale
Epidermal Microbiomes of Leopard Sharks ( Triakis semifasciata ) Are Consistent across Captive and Wild Environments. Microorganisms 10 (10) (2022)
Lais Farias Oliveira Lima, Maya Weissman, Micheal Reed, Bhavya Papudeshi, Amanda T Alker, Megan M Morris, Robert A Edwards, Samantha J de Putron, Naveen K Vaidya, Elizabeth A Dinsdale
Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network. mBio 11 (2) (2020)
Bhavya Papudeshi, J Matthew Haggerty, Michael Doane, Megan M Morris, Kevin Walsh, Douglas T Beattie, Dnyanada Pande, Parisa Zaeri, Genivaldo G Z Silva, Fabiano Thompson, Robert A Edwards, Elizabeth A Dinsdale
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes. BMC genomics 18 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Bhavya Papudeshi