Ryan R Wick (Ryan Wick, R Wick)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 38

Top Topics

Klebsiella Pneumoniae

Top Venues

bioRxiv : the preprint server for biology

PLoS computational biology

Microbiology resource announcements

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2024)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Ryan R Wick, Lousie M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Ryan R Wick, Lousie M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements 12 (2) (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Ryan R Wick, Lousie M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements 12 (2) (2023)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Ryan R Wick, Lousie M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements 12 (2) (2023)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
George Spyro Bouras, Ghais Houtak, Ryan R Wick, Vijini G Mallawaarachchi, Michael J Roach, Bhavya Papudeshi, Lousie M Judd, Anna E Sheppard, Robert A Edwards, Sarah Vreugde
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies. bioRxiv : the preprint server for biology (2023)
Claire L Gorrie, Mirjana Mirčeta, Ryan R Wick, Louise M Judd, Margaret M C Lam, Ryota Gomi, Iain J Abbott, Nicholas R Thomson, Richard A Strugnell, Nigel F Pratt, Jill S Garlick, Kerrie M Watson, Peter C Hunter, David V Pilcher, Steve A McGloughlin, Denis W Spelman, Kelly L Wyres, Adam W J Jenney, Kathryn E Holt
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen. Nature communications 13 (1) (2022)
Ryan R Wick, Kathryn E Holt
Polypolish: Short-read polishing of long-read bacterial genome assemblies. PLoS computational biology 18 (1) (2022)
Margaret M C Lam, Ryan R Wick, Stephen C Watts, Louise T Cerdeira, Kelly L Wyres, Kathryn E Holt
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nature communications 12 (1) (2021)
Ryan R Wick, Louise M Judd, Louise T Cerdeira, Jane Hawkey, Guillaume Méric, Ben Vezina, Kelly L Wyres, Kathryn E Holt
Trycycler: consensus long-read assemblies for bacterial genomes. Genome biology 22 (1) (2021)
C K Macleod, F A Khokhar, B Warne, Ryan R Wick, Robert M R Butcher, B Cassimon, P Hayden, K Holt, Michelle S Toleman
Rapid Whole Genome Sequencing of Serotype K1 Hypervirulent Klebsiella pneumoniae from an Undocumented Chinese Migrant. Case reports in infectious diseases 2021 (2021)
Kathryn E Holt, Florent Lassalle, Kelly L Wyres, Ryan R Wick, Rafał J Mostowy
Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales. The ISME journal 14 (7) (2020)
Caitlin M Gionfriddo, Matthew B Stott, Jean F Power, Jacob M Ogorek, David P Krabbenhoft, Ryan R Wick, Kathryn E Holt, Lin-Xing Chen, Brian C Thomas, Jillian F Banfield, John W Moreau
Genome-Resolved Metagenomics and Detailed Geochemical Speciation Analyses Yield New Insights into Microbial Mercury Cycling in Geothermal Springs. Applied and environmental microbiology 86 (15) (2020)
Ryan R Wick, Kathryn E Holt
Benchmarking of long-read assemblers for prokaryote whole genome sequencing. F1000Research (2019)
Ryan R Wick, Kathryn E Holt
Benchmarking of long-read assemblers for prokaryote whole genome sequencing. F1000Research 8 (2019)
Kelly L Wyres, Ryan R Wick, Lousie M Judd, Roni Froumine, Alex Tokolyi, Claire L Gorrie, Margaret M C Lam, Sebastián Duchêne, Adam Jenney, Kathryn E Holt
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. PLoS genetics 15 (4) (2019)
Ryan R Wick, Kathryn E Holt
Benchmarking of long-read assemblers for prokaryote whole genome sequencing. F1000Research (2019)
Hao Chung The, Christine Boinett, Duy Pham Thanh, Claire Jenkins, François-Xavier Weill, Benjamin Peter Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J Mason, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Vinh Phat Voong, Vu Thuy Duong, Phu Huong Lan Nguyen, Paul Turner, Ryan R Wick, Pieter-Jan Ceyssens, Guy Thwaites, Kathryn E Holt, Nicholas R Thomson, Maia A Rabaa, Stephen Baker
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. Nature communications 10 (1) (2019)
Mohammad Hamidian, Ryan R Wick, Louise M Judd, Kathryn E Holt, Ruth M Hall
Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece. Microbiology resource announcements 8 (41) (2019)
Louise T Cerdeira, Margaret M C Lam, Kelly L Wyres, Ryan R Wick, Louise M Judd, Ralf Lopes, Rosineide M Ribas, Marcia M Morais, Kathryn E Holt, Nilton Lincopán
Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258. Antimicrobial agents and chemotherapy 63 (3) (2019)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Performance of neural network basecalling tools for Oxford Nanopore sequencing. Genome biology 20 (1) (2019)
Ryan R Wick, Eva Heinz, Kathryn E Holt, Kelly L Wyres
Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes. Journal of clinical microbiology 56 (6) (2018)
Amy K Cain, Christine J Boinett, Lars Barquist, Janina Dordel, Maria Fookes, Matthew Mayho, Matthew J Ellington, David Goulding, Derek Pickard, Ryan R Wick, Kathryn E Holt, Julian Parkhill, Nicholas R Thomson
Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. Scientific reports 8 (1) (2018)
Ryan R Wick, Lousie M Judd, Kathryn E Holt
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. PLoS computational biology 14 (11) (2018)
Ryan R Wick, Lousie M Judd, Claire L Gorrie, Kathryn E Holt
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS computational biology 13 (6) (2017)
Caitlin M Gionfriddo, Michael T Tate, Ryan R Wick, Mark B Schultz, Adam Zemla, Michael P Thelen, Robyn Schofield, David P Krabbenhoft, Kathryn E Holt, John W Moreau
Microbial mercury methylation in Antarctic sea ice. Nature microbiology 1 (10) (2016)