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Ryan R Wick (Ryan Wick, R Wick)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 28

Top Venues

PLoS computational biology

Microbiology resource announcements

Nature communications

F1000Research

This page only lists publications with an associated author ORCID identifier.

Publications

Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Ryan R Wick, Louise M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements (2023)
Ryan R Wick, Louise M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements 12 (2) (2023)
Ryan R Wick, Louise M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements 12 (2) (2023)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Ryan R Wick, Louise M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear
Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159. Microbiology resource announcements 12 (2) (2023)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS computational biology 19 (3) (2023)
Claire L Gorrie, Mirjana Mirčeta, Ryan R Wick, Louise M Judd, Margaret M C Lam, Ryota Gomi, Iain J Abbott, Nicholas R Thomson, Richard A Strugnell, Nigel F Pratt, Jill S Garlick, Kerrie M Watson, Peter C Hunter, David V Pilcher, Steve A McGloughlin, Denis W Spelman, Kelly L Wyres, Adam W J Jenney, Kathryn E Holt
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen. Nature communications 13 (1) (2022)
Ryan R Wick, Kathryn E Holt
Polypolish: Short-read polishing of long-read bacterial genome assemblies. PLoS computational biology 18 (1) (2022)
Margaret M C Lam, Ryan R Wick, Stephen C Watts, Louise T Cerdeira, Kelly L Wyres, Kathryn E Holt
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nature communications 12 (1) (2021)
Ryan R Wick, Louise M Judd, Louise T Cerdeira, Jane Hawkey, Guillaume Méric, Ben Vezina, Kelly L Wyres, Kathryn E Holt
Trycycler: consensus long-read assemblies for bacterial genomes. Genome biology 22 (1) (2021)
C K Macleod, F A Khokhar, B Warne, Ryan R Wick, Robert M R Butcher, B Cassimon, P Hayden, K Holt, Michelle S Toleman
Rapid Whole Genome Sequencing of Serotype K1 Hypervirulent Klebsiella pneumoniae from an Undocumented Chinese Migrant. Case reports in infectious diseases 2021 (2021)
Kathryn E Holt, Florent Lassalle, Kelly L Wyres, Ryan R Wick, Rafał J Mostowy
Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales. The ISME journal 14 (7) (2020)
Caitlin M Gionfriddo, Matthew B Stott, Jean F Power, Jacob M Ogorek, David P Krabbenhoft, Ryan R Wick, Kathryn E Holt, Lin-Xing Chen, Brian C Thomas, Jillian F Banfield, John W Moreau
Genome-Resolved Metagenomics and Detailed Geochemical Speciation Analyses Yield New Insights into Microbial Mercury Cycling in Geothermal Springs. Applied and environmental microbiology 86 (15) (2020)
Ryan R Wick, Kathryn E Holt
Benchmarking of long-read assemblers for prokaryote whole genome sequencing. F1000Research (2019)
Ryan R Wick, Kathryn E Holt
Benchmarking of long-read assemblers for prokaryote whole genome sequencing. F1000Research 8 (2019)
Kelly L Wyres, Ryan R Wick, Louise M Judd, Roni Froumine, Alex Tokolyi, Claire L Gorrie, Margaret M C Lam, Sebastián Duchêne, Adam Jenney, Kathryn E Holt
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. PLoS genetics 15 (4) (2019)
Ryan R Wick, Kathryn E Holt
Benchmarking of long-read assemblers for prokaryote whole genome sequencing. F1000Research (2019)
Hao Chung The, Christine Boinett, Duy Pham Thanh, Claire Jenkins, François-Xavier Weill, Benjamin Peter Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J Mason, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Vinh Phat Voong, Vu Thuy Duong, Phu Huong Lan Nguyen, Paul Turner, Ryan R Wick, Pieter-Jan Ceyssens, Guy Thwaites, Kathryn E Holt, Nicholas R Thomson, Maia A Rabaa, Stephen Baker
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. Nature communications 10 (1) (2019)
Mohammad Hamidian, Ryan R Wick, Louise M Judd, Kathryn E Holt, Ruth M Hall
Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece. Microbiology resource announcements 8 (41) (2019)
Louise T Cerdeira, Margaret M C Lam, Kelly L Wyres, Ryan R Wick, Louise M Judd, Ralf Lopes, Rosineide M Ribas, Marcia M Morais, Kathryn E Holt, Nilton Lincopán
Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258. Antimicrobial agents and chemotherapy 63 (3) (2019)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Performance of neural network basecalling tools for Oxford Nanopore sequencing. Genome biology 20 (1) (2019)
Ryan R Wick, Eva Heinz, Kathryn E Holt, Kelly L Wyres
Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes. Journal of clinical microbiology 56 (6) (2018)
Amy K Cain, Christine J Boinett, Lars Barquist, Janina Dordel, Maria Fookes, Matthew Mayho, Matthew J Ellington, David Goulding, Derek Pickard, Ryan R Wick, Kathryn E Holt, Julian Parkhill, Nicholas R Thomson
Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. Scientific reports 8 (1) (2018)
Ryan R Wick, Louise M Judd, Kathryn E Holt
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. PLoS computational biology 14 (11) (2018)
Ryan R Wick, Louise M Judd, Claire L Gorrie, Kathryn E Holt
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS computational biology 13 (6) (2017)
Caitlin M Gionfriddo, Michael T Tate, Ryan R Wick, Mark B Schultz, Adam Zemla, Michael P Thelen, Robyn Schofield, David P Krabbenhoft, Kathryn E Holt, John W Moreau
Microbial mercury methylation in Antarctic sea ice. Nature microbiology 1 (10) (2016)

Ryan R Wick.css-eqlu8i{font-size:small;padding-left:4px;} (Ryan Wick, R Wick)

Publication Activity (10 Years)

Top Topics

Top Venues

Ryan R Wick (Ryan Wick, R Wick)