Charles G Danko (Charles Danko)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 33

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Nature genetics

Genome research

Cornell University

State University of New York Upstate Medical University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Cornell University

United States

Assistant Professor :: Baker Institute/ Department of Biomedical Sciences

Cornell University

United States

Postdoctoral Fellow :: Department of Biological Statistics and Computational Biology

State University of New York Upstate Medical University

United States

Software Developer :: SUNY Microarray Core Facility

State University of New York Upstate Medical University

United States

Graduate Student :: Department of Pharmacology

Kennedy Krieger Institute

United States

Research Assistant :: Center for Genetic Disorder of Cognition and Behavior

Education History

State University of New York Upstate Medical University

United States

PHD :: Department of Pharmacology

Johns Hopkins University

United States

BSC :: Biomedical Engineering

Publications

Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Adam Y He, Charles G Danko
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation. bioRxiv : the preprint server for biology (2024)
Charles G Danko, Alexandra G Chivu, Abderhman Abuhashem, Gilad Barshad, Edward Rice, Michelle Leger, Albert Vill, Wilfred Wong, Rebecca Brady, Jeramiah Smith, Athula Wikramanayake, César Arenas-Mena, Ilana Brito, Iñaki Ruiz-Trillo, Anna-Katerina Hadjantonakis, John Lis, James Lewis
Evolution of promoter-proximal pausing enabled a new layer of transcription control. Research square (2023)
Adriana K Alexander, Edward J Rice, Jelena Lujic, Leah E Simon, Stephanie Tanis, Gilad Barshad, Lina Zhu, Jyoti Lama, Paula E Cohen, Charles G Danko
A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis. Nature communications 14 (1) (2023)
Gilad Barshad, James J Lewis, Alexandra G Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward J Rice, Yitian Ma, Zhong Wang, Oliver J Rando, Anna-Katerina Hadjantonakis, Charles G Danko
RNA polymerase II dynamics shape enhancer-promoter interactions. Nature genetics (2023)
Adriana K Alexander, Edward J Rice, Jelena Lujic, Leah E Simon, Stephanie Tanis, Gilad Barshad, Lina Zhu, Jyoti Lama, Paula E Cohen, Charles G Danko
A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis. Nature communications 14 (1) (2023)
Adriana K Alexander, Edward J Rice, Jelena Lujic, Leah E Simon, Stephanie Tanis, Gilad Barshad, Lina Zhu, Jyoti Lama, Paula E Cohen, Charles G Danko
A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis. Nature communications 14 (1) (2023)
Adriana K Alexander, Edward J Rice, Jelena Lujic, Leah E Simon, Stephanie Tanis, Gilad Barshad, Lina Zhu, Jyoti Lama, Paula E Cohen, Charles G Danko
A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis. Nature communications 14 (1) (2023)
Shao-Pei Chou, Adriana K Alexander, Edward J Rice, Lauren A Choate, Charles G Danko
Genetic dissection of the RNA polymerase II transcription cycle. eLife 11 (2022)
Taylorlyn Stephan, Jason W Sinclair, Hans Cheng, Charles G Danko, Clare A Gill, Erich D Jarvis, Klaus-Peter Koepfli, James Eugene Koltes, Eric Lyons, Pamela C Ronald, Oliver A Ryder, Lynn M Schriml, Pamela S Soltis, Susan VandeWoude, Huaijun Zhou, Elaine A Ostrander, Elinor K Karlsson
Darwinian genomics and diversity in the tree of life. Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Zhong Wang, Alexandra G Chivu, Lauren A Choate, Edward J Rice, Donald C Miller, Tinyi Chu, Shao-Pei Chou, Nicole B Kingsley, Jessica L Petersen, Carrie J Finno, Rebecca R Bellone, Douglas F Antczak, John T Lis, Charles G Danko
Prediction of histone post-translational modification patterns based on nascent transcription data. Nature genetics 54 (3) (2022)
Tinyi Chu, Zhong Wang, Dana Pe'er, Charles G Danko
Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology. Nature cancer 3 (4) (2022)
Gilad Barshad, Lauren M Webb, Hung-An Ting, Oyebola O Oyesola, Oluomachi G Onyekwere, James J Lewis, Edward J Rice, Macy K Matheson, Xiao-Hong Sun, Jakob von Moltke, Charles G Danko, Elia D Tait Wojno
E-Protein Inhibition in ILC2 Development Shapes the Function of Mature ILC2s during Allergic Airway Inflammation. Journal of immunology (Baltimore, Md. : 1950) 208 (5) (2022)
Michael F Z Wang, Madhav Mantri, Shao-Pei Chou, Gaetano J Scuderi, David W McKellar, Jonathan T Butcher, Charles G Danko, Iwijn De Vlaminck
Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis. Nature communications 12 (1) (2021)
Lauren A Choate, Gilad Barshad, Pierce W McMahon, Iskander Said, Edward J Rice, Paul R Munn, James J Lewis, Charles G Danko
Multiple stages of evolutionary change in anthrax toxin receptor expression in humans. Nature communications 12 (1) (2021)
Yi Ching Esther Wan, Jiaxian Liu, Lina Zhu, Tze Zhen Evangeline Kang, Xiaoxuan Zhu, John T Lis, Toyotaka Ishibashi, Charles G Danko, Xin Wang, Kui Ming Chan
The H2BG53D oncohistone directly upregulates ANXA3 transcription and enhances cell migration in pancreatic ductal adenocarcinoma. Signal transduction and targeted therapy 5 (1) (2020)
James J Lewis, Steven M Van Belleghem, Riccardo Papa, Charles G Danko, Robert D Reed
Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone. Science advances 6 (39) (2020)
Zhong Wang, Tinyi Chu, Lauren A Choate, Charles G Danko
Identification of regulatory elements from nascent transcription using dREG. Genome research 29 (2) (2018)
Amit Blumberg, Charles G Danko, Anshul Kundaje, Dan Mishmar
A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization. Genome research 28 (8) (2018)
Sachi Horibata, Edward J Rice, Hui Zheng, Chinatsu Mukai, Tinyi Chu, Brooke A Marks, Scott A Coonrod, Charles G Danko
A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer. PloS one 13 (4) (2018)
Mridusmita Saikia, Philip Burnham, Sara H Keshavjee, Michael F Z Wang, Michael Heyang, Pablo Moral-Lopez, Meleana M Hinchman, Charles G Danko, John S L Parker, Iwijn De Vlaminck
Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells. Nature methods 16 (1) (2018)
Sachi Horibata, Edward J Rice, Chinatsu Mukai, Brooke A Marks, Kelly Sams, Hui Zheng, Lynne J Anguish, Scott A Coonrod, Charles G Danko
ER-positive breast cancer cells are poised for RET-mediated endocrine resistance. PloS one 13 (4) (2018)
Tinyi Chu, Edward J Rice, Gregory T Booth, H Hans Salamanca, Zhong Wang, Leighton J Core, Sharon L Longo, Robert J Corona, Lawrence S Chin, John T Lis, Hojoong Kwak, Charles G Danko
Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme. Nature genetics 50 (11) (2018)
Lauren A Choate, Charles G Danko
Poised for development. Nature genetics 48 (8) (2017)
Amit Blumberg, Edward J Rice, Anshul Kundaje, Charles G Danko, Dan Mishmar
Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution. Genome research 27 (3) (2017)
Vicki N Meyers-Wallen, Adam R Boyko, Charles G Danko, Jennifer K Grenier, Jason G Mezey, Jessica J Hayward, Laura M Shannon, Chuan Gao, Afrah Shafquat, Edward J Rice, Shashikant Pujar, Stefanie Eggers, Thomas Ohnesorg, Andrew H Sinclair
XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris). PloS one 12 (10) (2017)
Dig Bijay Mahat, Hojoong Kwak, Gregory T Booth, Iris H Jonkers, Charles G Danko, Ravi K Patel, Colin T Waters, Katherine M Munson, Leighton J Core, John T Lis
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq). Nature protocols 11 (8) (2016)

Charles G Danko.css-eqlu8i{font-size:small;padding-left:4px;} (Charles Danko)

Publication Activity (10 Years)

Top Topics

Top Venues

Charles G Danko (Charles Danko)