Jason W Sinclair (Shawn Burgess, Shawn M Burgess)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 30

Top Venues

Scientific data

Communications biology

NPJ Regenerative medicine

Nature communications

Johns Hopkins School of Medicine (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Johns Hopkins School of Medicine Sep 01 1990 - Jun 01 1996

United States

PHD :: BCMB

Publications

Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Tarján-Rácz, Ildikó Szeverényi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, Laszlo Orban, Ádám Miklósi, Máté Varga, Jason W Sinclair
The reference genome of Macropodus opercularis (the paradise fish). Scientific data 11 (1) (2024)
Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Tarján-Rácz, Ildikó Szeverényi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, Laszlo Orban, Ádám Miklósi, Máté Varga, Jason W Sinclair
The reference genome of Macropodus opercularis (the paradise fish). Scientific data 11 (1) (2024)
Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Tarján-Rácz, Ildikó Szeverényi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, Laszlo Orban, Ádám Miklósi, Máté Varga, Jason W Sinclair
The reference genome of Macropodus opercularis (the paradise fish). Scientific data 11 (1) (2024)
Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Tarján-Rácz, Ildikó Szeverényi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, Laszlo Orban, Ádám Miklósi, Máté Varga, Jason W Sinclair
The reference genome of Macropodus opercularis (the paradise fish). Scientific data 11 (1) (2024)
Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Tarján-Rácz, Ildikó Szeverényi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, Laszlo Orban, Ádám Miklósi, Máté Varga, Jason W Sinclair
The reference genome of Macropodus opercularis (the paradise fish). Scientific data 11 (1) (2024)
Juan P García-López, Alexandre Grimaldi, Zelin Chen, Claudio Meneses, Karina Bravo-Tello, Erica Bresciani, Alvaro Banderas, Jason W Sinclair, Pedro P Hernández, Carmen G Feijóo
Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. Nature communications 14 (1) (2023)
Juan P García-López, Alexandre Grimaldi, Zelin Chen, Claudio Meneses, Karina Bravo-Tello, Erica Bresciani, Alvaro Banderas, Jason W Sinclair, Pedro P Hernández, Carmen G Feijóo
Author Correction: Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. Nature communications 14 (1) (2023)
Ashley T Sendell-Price, Frank J Tulenko, Mats E Pettersson, Kang Du, Margo Montandon, Sylke Winkler, Kathleen Kulb, Gavin P Naylor, Adam M Phillippy, Olivier Fedrigo, Jacquelyn Mountcastle, Jennifer R Balacco, Amalia Dutra, Rebecca E Dale, Bettina Haase, Erich D Jarvis, Eugene W Myers, Jason W Sinclair, Peter David Currie, Leif Andersson, Manfred Schartl
Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks. Nature communications 14 (1) (2023)
Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Rácz, Ildiko Szeverenyi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, Laszlo Orban, Ádám Miklósi, Máté Varga, Jason W Sinclair
The reference genome of the paradise fish ( Macropodus opercularis ). bioRxiv : the preprint server for biology (2023)
Rachel Weinstein, Kevin Bishop, Elizabeth A Broadbridge, Kai Yu, Blake Carrington, Abdel Elkahloun, Tao Zhen, Wuhong Pei, Jason W Sinclair, Paul Liu, Erica Bresciani, Raman Sood
Zrsr2 Is Essential for the Embryonic Development and Splicing of Minor Introns in RNA and Protein Processing Genes in Zebrafish. International journal of molecular sciences 23 (18) (2022)
Tetsuo Kon, Kentaro Fukuta, Zelin Chen, Koto Kon-Nanjo, Kota Suzuki, Masakazu Ishikawa, Hikari Tanaka, Jason W Sinclair, Hideki Noguchi, Atsushi Toyoda, Yoshihiro Omori
Single-cell transcriptomics of the goldfish retina reveals genetic divergence in the asymmetrically evolved subgenomes after allotetraploidization. Communications biology 5 (1) (2022)
Tetsuo Kon, Kentaro Fukuta, Zelin Chen, Koto Kon-Nanjo, Kota Suzuki, Masakazu Ishikawa, Hikari Tanaka, Jason W Sinclair, Hideki Noguchi, Atsushi Toyoda, Yoshihiro Omori
Single-cell transcriptomics of the goldfish retina reveals genetic divergence in the asymmetrically evolved subgenomes after allotetraploidization. Communications biology 5 (1) (2022)
Tetsuo Kon, Kentaro Fukuta, Zelin Chen, Koto Kon-Nanjo, Kota Suzuki, Masakazu Ishikawa, Hikari Tanaka, Jason W Sinclair, Hideki Noguchi, Atsushi Toyoda, Yoshihiro Omori
Single-cell transcriptomics of the goldfish retina reveals genetic divergence in the asymmetrically evolved subgenomes after allotetraploidization. Communications biology 5 (1) (2022)
Taylorlyn Stephan, Jason W Sinclair, Hans Cheng, Charles G Danko, Clare A Gill, Erich D Jarvis, Klaus-Peter Koepfli, James Eugene Koltes, Eric Lyons, Pamela C Ronald, Oliver A Ryder, Lynn M Schriml, Pamela S Soltis, Susan VandeWoude, Huaijun Zhou, Elaine A Ostrander, Elinor K Karlsson
Darwinian genomics and diversity in the tree of life. Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Damir Baranasic, Matthias Hörtenhuber, Piotr J Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Varnai, Yavor Hadzhiev, Ada Jimenez Gonzalez, Nan Li, Joseph Wragg, Fabio M D'Orazio, Dorde Relic, Mikhail Pachkov, Noelia Díaz, Benjamín Hernández-Rodríguez, Zelin Chen, Marcus Stoiber, Michael X Dong, Irene Stevens, Samuel E Ross, Anne Eagle, Ryan Martin, Oluwapelumi Obasaju, Sepand Rastegar, Alison C McGarvey, Wolfgang Kopp, Emily V Chambers, Dennis Wang, Hyejeong R Kim, Rafael D Acemel, Silvia Naranjo, Maciej Łapiński, Vanessa Chong-Morrison, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka-Spengler, Martin Vingron, Piero Carnici, Uwe Ohler, Scott Allen Lacadie, Jason W Sinclair, Cecilia Lanny Winata, Fredericus J M van Eeden, Juan M Vaquerizas, José Luis Gómez-Skarmeta, Daria Onichtchouk, Ben James Brown, Ozren Bogdanovic, Erik van Nimwegen, Monte Westerfield, Fiona C Wardle, Carsten O Daub, Boris Lenhard, Ferenc Müller
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature genetics 54 (7) (2022)
Judith Habicher, Guarav K Varshney, Laura Waldmann, Daniel Snitting, Amin Allalou, Hanqing Zhang, Abdurrahman Ghanem, Caroline Öhman-Mägi, Tabea Dierker, Lena Kjellén, Jason W Sinclair, Johan Ledin
Chondroitin/dermatan sulfate glycosyltransferase genes are essential for craniofacial development. PLoS genetics 18 (2) (2022)
Tetsuo Kon, Kentaro Fukuta, Zelin Chen, Koto Kon-Nanjo, Kota Suzuki, Masakazu Ishikawa, Hikari Tanaka, Jason W Sinclair, Hideki Noguchi, Atsushi Toyoda, Yoshihiro Omori
Single-cell transcriptomics of the goldfish retina reveals genetic divergence in the asymmetrically evolved subgenomes after allotetraploidization. Communications biology 5 (1) (2022)
Li Wang, Matteo Astone, Sk Kayum Alam, Zhu Zhu, Wuhong Pei, David A Frank, Jason W Sinclair, Luke H Hoeppner
Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability. Disease models & mechanisms 14 (11) (2021)
Jason W Sinclair, David R Hoying, Erica Bresciani, Damian Dalle Nogare, Carli D Needle, Alexandra Berger, Weiwei Wu, Kevin Bishop, Abdel G Elkahloun, Ajay Chitnis, Paul Liu, Shawn M Burgess
The Warburg effect is necessary to promote glycosylation in the blastema during zebrafish tail regeneration. NPJ Regenerative medicine 6 (1) (2021)
Wuhong Pei, Lisha Xu, Zelin Chen, Claire C Slevin, Kade P Pettie, Stephen Wincovitch, null null, Jason W Sinclair
A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation. NPJ Regenerative medicine 5 (2020)
Noriko Ichino, MaKayla R Serres, Rhianna M Urban, Mark D Urban, Anthony J Treichel, Kyle J Schaefbauer, Lauren E Greif, Guarav K Varshney, Kimberly J Skuster, Melissa S McNulty, Camden L Daby, Ying Wang, Hsin-Kai Liao, Suzan El-Rass, Yonghe Ding, Weibin Liu, Jennifer L Anderson, Mark D Wishman, Ankit Sabharwal, Lisa A Schimmenti, Sridhar Sivasubbu, Darius Balciunas, Matthias Hammerschmidt, Steven Arthur Farber, Xiao-Yan Wen, Xiaolei Xu, Maura McGrail, Jeffrey J Essner, Jason W Sinclair, Karl J Clark, Stephen C Ekker
Building the vertebrate codex using the gene breaking protein trap library. eLife 9 (2020)
David B Beck, Marcela A Ferrada, Keith A Sikora, Amanda K Ombrello, Jason C Collins, Wuhong Pei, Nicholas Balanda, Daron L Ross, Daniela Ospina Cardona, Zhijie Wu, Bhavisha Patel, Kalpana Manthiram, Emma M Groarke, Fernanda Gutierrez-Rodrigues, Patrycja Hoffmann, Sofia Rosenzweig, Shuichiro Nakabo, Laura W Dillon, Christopher S Hourigan, Wanxia L Tsai, Sarthak Gupta, Carmelo Carmona-Rivera, Anthony J Asmar, Lisha Xu, Hirotsugu Oda, Wendy Goodspeed, Karyl S Barron, Michele Nehrebecky, Anne Jones, Ryan S Laird, Natalie T Deuitch, Dorota Rowczenio, Emily Rominger, Kristina V Wells, Chyi-Chia R Lee, Weixin Wang, Megan Trick, James Mullikin, Gustaf Wigerblad, Stephen Brooks, Stefania Dell'Orso, Zuoming Deng, Jae J Chae, Alina Dulau-Florea, May C V Malicdan, Danica Novacic, Robert A Colbert, Mariana J Kaplan, Massimo Gadina, Sinisa Savic, Helen J Lachmann, Mones Abu-Asab, Benjamin D Solomon, Kyle Retterer, William A Gahl, Jason W Sinclair, Ivona Aksentijevich, Neal S Young, Katherine R Calvo, Achim Werner, Daniel L Kastner, Peter C Grayson
Somatic Mutations in UBA1 and Severe Adult-Onset Autoinflammatory Disease. The New England journal of medicine 383 (27) (2020)
Rakesh Kumar Banote, Jasmine Chebli, Tuğçe Munise Şatır, Guarav K Varshney, Rafael Camacho, Johan Ledin, Jason W Sinclair, Alexandra Abramsson, Henrik Zetterberg
Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish. Scientific reports 10 (1) (2020)
Zelin Chen, Yoshihiro Omori, Sergey Koren, Takuya Shirokiya, Takuo Kuroda, Atsushi Miyamoto, Hironori Wada, Asao Fujiyama, Atsushi Toyoda, Suiyuan Zhang, Tyra G Wolfsberg, Koichi Kawakami, Adam M Phillippy, null null, May Christine V Malicdan, Jason W Sinclair
De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication. Science advances 5 (6) (2019)
Alberto Rissone, Erin Jimenez, Kevin Bishop, Blake Carrington, Claire Slevin, Stephen M Wincovitch, Raman Sood, Fabio Candotti, Jason W Sinclair
A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. Disease models & mechanisms 12 (12) (2019)
Wuhong Pei, Lisha Xu, Sunny C Huang, Kade P Pettie, Jennifer Idol, Alberto Rissone, Erin Jimenez, Jason W Sinclair, Claire Slevin, Gaurav K Varshney, MaryPat Jones, Blake Carrington, Kevin Bishop, Haigen Huang, Raman Sood, Shuo Lin, Jason W Sinclair
Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues. NPJ Regenerative medicine 3 (2018)
Wei-Chia Tseng, Hannah E Loeb, Wuhong Pei, Chon-Hwa Tsai-Morris, Lisha Xu, Celine V Cluzeau, Christopher A Wassif, Benjamin Feldman, Jason W Sinclair, William J Pavan, Forbes D Porter
Modeling Niemann-Pick disease type C1 in zebrafish: a robust platform for in vivo screening of candidate therapeutic compounds. Disease models & mechanisms 11 (9) (2018)
Dawn E Watkins-Chow, Guarav K Varshney, Lisa J Garrett, Zelin Chen, Erin A Jimenez, Cecilia Rivas, Kevin S Bishop, Raman Sood, Ursula L Harper, William J Pavan, Jason W Sinclair
Highly Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection. G3 (Bethesda, Md.) 7 (2) (2017)
Nicholas G Crawford, Derek E Kelly, Matthew E B Hansen, Marcia Holsbach Beltrame, Shaohua Fan, Shanna L Bowman, Ethan Jewett, Alessia Ranciaro, Simon Thompson, Yancy Lo, Susanne P Pfeifer, Jeffrey D Jensen, Michael C Campbell, William Beggs, Farhad Hormozdiari, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Thomas Nyambo, Dawit Wolde Meskel, Gurja Belay, Jake Haut, null null, Harriet T Rothschild, Leonard I Zon, Yi Zhou, Michael A Kovacs, Mai Xu, Tongwu Zhang, Kevin Bishop, Jason Sinclair, Cecilia Rivas, Eugene Elliot, Jiyeon Choi, Shengchao A Li, Belynda D Hicks, Jason W Sinclair, Christian C Abnet, Dawn E Watkins-Chow, Elena Oancea, Yun S Song, Eleazar Eskin, Kevin K Brown, Michael S Marks, Stacie K Loftus, William J Pavan, Meredith Yeager, Stephen Chanock, Sarah A Tishkoff
Loci associated with skin pigmentation identified in African populations. Science (New York, N.Y.) 358 (6365) (2017)
Gaurav K Varshney, Blake Carrington, Wuhong Pei, Kevin Bishop, Zelin Chen, Chunxin Fan, Lisha Xu, Marypat Jones, Matthew C LaFave, Johan Ledin, Raman Sood, Jason W Sinclair
A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish. Nature protocols 11 (12) (2016)
Linlin Yin, Lisette A Maddison, Ming-Yu Li, Nergis Kara, Matthew C LaFave, Guarav K Varshney, Jason W Sinclair, James G Patton, Wenbiao Chen
Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs. Genetics 200 (2) (2015)

Jason W Sinclair.css-eqlu8i{font-size:small;padding-left:4px;} (Shawn Burgess, Shawn M Burgess)

Publication Activity (10 Years)

Top Topics

Top Venues

Jason W Sinclair (Shawn Burgess, Shawn M Burgess)