Chittibabu Guda

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 35

Top Topics

Autism Spectrum Disorder

Dna Methylation

Top Venues

Scientific reports

Briefings in bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Sushil K Shakyawar, Balasrinivasa R Sajja, Jai Chand Patel, Chittibabu Guda
i CluF: an unsupervised iterative cluster-fusion method for patient stratification using multiomics data. Bioinformatics advances 4 (1) (2024)
Katherine E Odegaard, Gabriel Gallegos, Sneh Koul, Victoria L Schaal, Neetha N Vellichirammal, Chittibabu Guda, Andrea P Dutoit, Steven J Lisco, Sowmya V Yelamanchili, Gurudutt Pendyala
Correction: Odegaard et al. Distinct Synaptic Vesicle Proteomic Signatures Associated with Pre- and Post-Natal Oxycodone-Exposure. Cells 2022, 11 , 1740. Cells 13 (16) (2024)
Chunbo He, Xiangmin Lv, Jiyuan Liu, Jinpeng Ruan, Peichao Chen, Cong Huang, Peter C Angeletti, Guohua Hua, Madelyn Leigh Moness, Davie Shi, Anjali Dhar, Siyi Yang, Savannah Murphy, Isabelle Montoute, Xingcheng Chen, Kazi Nazrul Islam, Sophia H L George, Tan A Ince, Ronny Drapkin, Chittibabu Guda, John S Davis, Cheng Wang
HPV-YAP1 oncogenic alliance drives malignant transformation of fallopian tube epithelial cells. EMBO reports (2024)
Avinash M Veerappa, M Jordan Rowley, Angela Maggio, Laura Beaudry, Dale Hawkins, Allen Kim, Sahil Sethi, Paul L Sorgen, Chittibabu Guda
CloudATAC: a cloud-based framework for ATAC-Seq data analysis. Briefings in bioinformatics 25 (Supplement_1) (2024)
Sushil K Shakyawar, Balasrinivasa R Sajja, Jai Chand Patel, Chittibabu Guda
i CluF: an unsupervised iterative cluster-fusion method for patient stratification using multiomics data. Bioinformatics advances 4 (1) (2024)
Avinash M Veerappa, M Jordan Rowley, Angela Maggio, Laura Beaudry, Dale Hawkins, Allen Kim, Sahil Sethi, Paul L Sorgen, Chittibabu Guda
CloudATAC: a cloud-based framework for ATAC-Seq data analysis. Briefings in bioinformatics 25 (Supplement_1) (2024)
Sahil Sethi, Sushil Kumar Shakyawar, Athreya S Reddy, Jai Chand Patel, Chittibabu Guda
A Machine Learning Model for the Prediction of COVID-19 Severity Using RNA-Seq, Clinical, and Co-Morbidity Data. Diagnostics (Basel, Switzerland) 14 (12) (2024)
Avinash M Veerappa, M Jordan Rowley, Angela Maggio, Laura Beaudry, Dale Hawkins, Allen Kim, Sahil Sethi, Paul L Sorgen, Chittibabu Guda
CloudATAC: a cloud-based framework for ATAC-Seq data analysis. Briefings in bioinformatics 25 (Supplement_1) (2024)
Sahil Sethi, Sushil Kumar Shakyawar, Athreya S Reddy, Jai Chand Patel, Chittibabu Guda
A Machine Learning Model for the Prediction of COVID-19 Severity Using RNA-Seq, Clinical, and Co-Morbidity Data. Diagnostics (Basel, Switzerland) 14 (12) (2024)
Katherine E Odegaard, Gabriel Gallegos, Sneh Koul, Victoria L Schaal, Neetha N Vellichirammal, Chittibabu Guda, Andrea P Dutoit, Steven J Lisco, Sowmya V Yelamanchili, Gurudutt Pendyala
Correction: Odegaard et al. Distinct Synaptic Vesicle Proteomic Signatures Associated with Pre- and Post-Natal Oxycodone-Exposure. Cells 2022, 11 , 1740. Cells 13 (16) (2024)
Pranavi Athota, Nghi M Nguyen, Victoria L Schaal, Sankarasubramanian Jagadesan, Chittibabu Guda, Sowmya V Yelamanchili, Gurudutt Pendyala
Novel RNA-Seq Signatures Post-Methamphetamine and Oxycodone Use in a Model of HIV-Associated Neurocognitive Disorders. Viruses 15 (9) (2023)
Anjali Bhat, Rafay Abu, Sankarasubramanian Jagadesan, Neetha Nanoth Vellichirammal, Ved Vasishtha Pendyala, Li Yu, Tara L Rudebush, Chittibabu Guda, Irving H Zucker, Vikas Kumar, Lie Gao
Quantitative Proteomics Identifies Novel Nrf2-Mediated Adaptative Signaling Pathways in Skeletal Muscle Following Exercise Training. Antioxidants (Basel, Switzerland) 12 (1) (2023)
Nghi M Nguyen, Daniel Meyer, Luke Meyer, Subhash Chand, Sankarasubramanian Jagadesan, Maireen Miravite, Chittibabu Guda, Sowmya V Yelamanchili, Gurudutt Pendyala
Identification of YWHAH as a Novel Brain-Derived Extracellular Vesicle Marker Post Long-Term Midazolam Exposure during Early Development. Cells 12 (6) (2023)
Anjali Bhat, Rafay Abu, Sankarasubramanian Jagadesan, Neetha Nanoth Vellichirammal, Ved Vasishtha Pendyala, Li Yu, Tara L Rudebush, Chittibabu Guda, Irving H Zucker, Vikas Kumar, Lie Gao
Quantitative Proteomics Identifies Novel Nrf2-Mediated Adaptative Signaling Pathways in Skeletal Muscle Following Exercise Training. Antioxidants (Basel, Switzerland) 12 (1) (2023)
Nghi M Nguyen, Daniel Meyer, Luke Meyer, Subhash Chand, Sankarasubramanian Jagadesan, Maireen Miravite, Chittibabu Guda, Sowmya V Yelamanchili, Gurudutt Pendyala
Identification of YWHAH as a Novel Brain-Derived Extracellular Vesicle Marker Post Long-Term Midazolam Exposure during Early Development. Cells 12 (6) (2023)
Nghi M Nguyen, Daniel Meyer, Luke Meyer, Subhash Chand, Sankarasubramanian Jagadesan, Maireen Miravite, Chittibabu Guda, Sowmya V Yelamanchili, Gurudutt Pendyala
Identification of YWHAH as a Novel Brain-Derived Extracellular Vesicle Marker Post Long-Term Midazolam Exposure during Early Development. Cells 12 (6) (2023)
Sanjit Pandey, Nagavardhini Avuthu, Chittibabu Guda
StrainIQ: A Novel n -Gram-Based Method for Taxonomic Profiling of Human Microbiota at the Strain Level. Genes 14 (8) (2023)
Ved Vasishtha Pendyala, Sarah Pribil, Victoria L Schaal, Kanika Sharma, Sankarasubramanian Jagadesan, Li Yu, Vikas Kumar, Chittibabu Guda, Lie Gao
Effects of Acute and Chronic Gabapentin Treatment on Cardiovascular Function of Rats. Cells 12 (23) (2023)
Sankarasubramanian Jagadesan, Pinaki Mondal, Mark A Carlson, Chittibabu Guda
Evaluation of Five Mammalian Models for Human Disease Research Using Genomic and Bioinformatic Approaches. Biomedicines 11 (8) (2023)
Siddesh Southekal, Sushil Kumar Shakyawar, Prachi Bajpai, Amr Elkholy, Upender Manne, Nitish Kumar Mishra, Chittibabu Guda
Molecular Subtyping and Survival Analysis of Osteosarcoma Reveals Prognostic Biomarkers and Key Canonical Pathways. Cancers 15 (7) (2023)
Nagavardhini Avuthu, Chittibabu Guda
Meta-Analysis of Altered Gut Microbiota Reveals Microbial and Metabolic Biomarkers for Colorectal Cancer. Microbiology spectrum 10 (4) (2022)
Katherine E Odegaard, Gabriel Gallegos, Sneh Koul, Victoria L Schaal, Neetha N Vellichirammal, Chittibabu Guda, Andrea P Dutoit, Steven J Lisco, Sowmya V Yelamanchili, Gurudutt Pendyala
Distinct Synaptic Vesicle Proteomic Signatures Associated with Pre- and Post-Natal Oxycodone-Exposure. Cells 11 (11) (2022)
Sushil Shakyawar, Siddesh Southekal, Chittibabu Guda
mintRULS: Prediction of miRNA-mRNA Target Site Interactions Using Regularized Least Square Method. Genes 13 (9) (2022)
Logan L Bulock, Jongsam Ahn, Dhananjay Shinde, Sanjit Pandey, Cleofes Sarmiento, Vinai Chittezham Thomas, Chittibabu Guda, Kenneth W Bayles, Marat R Sadykov
Interplay of CodY and CcpA in Regulating Central Metabolism and Biofilm Formation in Staphylococcus aureus. Journal of bacteriology 204 (7) (2022)
Nghi M Nguyen, Neetha N Vellichirammal, Chittibabu Guda, Gurudutt Pendyala
Decoding the Synaptic Proteome with Long-Term Exposure to Midazolam during Early Development. International journal of molecular sciences 23 (8) (2022)
Siddesh Southekal, Nitish Kumar Mishra, Chittibabu Guda
Pan-Cancer Analysis of Human Kinome Gene Expression and Promoter DNA Methylation Identifies Dark Kinase Biomarkers in Multiple Cancers. Cancers 13 (6) (2021)
Sneh Koul, Victoria L Schaal, Subhash Chand, Steven T Pittenger, Neetha Nanoth Vellichirammal, Vikas Kumar, Chittibabu Guda, Rick A Bevins, Sowmya V Yelamanchili, Gurudutt Pendyala
Role of Brain Derived Extracellular Vesicles in Decoding Sex Differences Associated with Nicotine Self-Administration. Cells 9 (8) (2020)
Yuan-De Tan, Peng Xiao, Chittibabu Guda
In-depth Mendelian randomization analysis of causal factors for coronary artery disease. Scientific reports 10 (1) (2020)
Wa Zhang, David Klinkebiel, Carter J Barger, Sanjit Pandey, Chittibabu Guda, Austin Miller, Stacey N Akers, Kunle Odunsi, Adam R Karpf
Global DNA Hypomethylation in Epithelial Ovarian Cancer: Passive Demethylation and Association with Genomic Instability. Cancers 12 (3) (2020)
Adam Cornish, Shrabasti Roychoudhury, Krishna Sarma, Suravi Pramanik, Kishor Bhakat, Andrew Dudley, Nitish K Mishra, Chittibabu Guda
Red panda: a novel method for detecting variants in single-cell RNA sequencing. BMC genomics 21 (Suppl 11) (2020)
Dalia Moore, Brittney M Meays, Lepakshe S V Madduri, Farah Shahjin, Subhash Chand, Meng Niu, Abrar Albahrani, Chittibabu Guda, Gurudutt Pendyala, Howard S Fox, Sowmya V Yelamanchili
Downregulation of an Evolutionary Young miR-1290 in an iPSC-Derived Neural Stem Cell Model of Autism Spectrum Disorder. Stem cells international 2019 (2019)
Ray O Bahado-Singh, Sangeetha Vishweswaraiah, Buket Aydas, Nitish Kumar Mishra, Chittibabu Guda, Uppala Radhakrishna
Deep Learning/Artificial Intelligence and Blood-Based DNA Epigenomic Prediction of Cerebral Palsy. International journal of molecular sciences 20 (9) (2019)
Sangeetha Vishweswaraiah, Joanna Swierkowska, Uppala Ratnamala, Nitish K Mishra, Chittibabu Guda, Shiva S Chettiar, Kaid R Johar, Malgorzata Mrugacz, Justyna A Karolak, Marzena Gajecka, Uppala Radhakrishna
Epigenetically dysregulated genes and pathways implicated in the pathogenesis of non-syndromic high myopia. Scientific reports 9 (1) (2019)
Matyas Cserhati, Peng Xiao, Chittibabu Guda
K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification. Computational and mathematical methods in medicine 2019 (2019)
Simarjeet K Negi, Chittibabu Guda
Global gene expression profiling of healthy human brain and its application in studying neurological disorders. Scientific reports 7 (1) (2017)
Ru Shen, Chittibabu Guda
Applied graph-mining algorithms to study biomolecular interaction networks. BioMed research international 2014 (2014)