Christophe Dessimoz

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 41

Top Venues

F1000Research

Nature biotechnology

Genome biology and evolution

Proceedings of the National Academy of Sciences of the United States of America

University of Lausanne

ETH Zurich (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Lausanne Oct 02 2015

Switzerland

SNSF Professor

University College London Oct 01 2015

United Kingdom

Reader

European Bioinformatics Institute Sep 01 2011 - Dec 31 2015

United Kingdom

SNSF Fellow / Visiting Scientist

University College London Jun 01 2013 - Oct 01 2015

United Kingdom

Lecturer

ETH Zurich Jan 01 2011 - Aug 31 2011

Switzerland

Senior Research Associate (Oberassistent) :: Computer Science

ETH Zurich Jan 01 2009 - Dec 31 2010

Switzerland

Postdoc :: Computer Science

Education History

ETH Zurich Sep 01 2004 - Dec 19 2008

Switzerland

PHD :: Computer Science

Publications

Victor Rossier, Clement Train, Yannis Nevers, Marc Robinson-Rechavi, Christophe Dessimoz
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families. Genome biology and evolution 16 (6) (2024)
Victor Rossier, Clement Train, Yannis Nevers, Marc Robinson-Rechavi, Christophe Dessimoz
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families. Genome biology and evolution 16 (6) (2024)
David Moi, Christophe Dessimoz
Frequent jumps from human hosts. Nature ecology & evolution 8 (5) (2024)
Victor Rossier, Clement Train, Yannis Nevers, Marc Robinson-Rechavi, Christophe Dessimoz
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families. Genome biology and evolution 16 (6) (2024)
Victor Rossier, Clement Train, Yannis Nevers, Marc Robinson-Rechavi, Christophe Dessimoz
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families. Genome biology and evolution 16 (6) (2024)
David Moi, Christophe Dessimoz
Frequent jumps from human hosts. Nature ecology & evolution (2024)
David Moi, Christophe Dessimoz
Frequent jumps from human hosts. Nature ecology & evolution 8 (5) (2024)
Victor Rossier, Clement Train, Yannis Nevers, Marc Robinson-Rechavi, Christophe Dessimoz
Matreex: compact and interactive visualisation for scalable studies of large gene families. Genome biology and evolution (2024)
David Moi, Christophe Dessimoz
Phylogenetic profiling in eukaryotes comes of age. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree. Nature biotechnology (2023)
David Moi, Christophe Dessimoz
Phylogenetic profiling in eukaryotes comes of age. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Marie-Claude Blatter, Monique Zahn-Zabal, Samuel Moix, Béatrice Pichon, Christophe Dessimoz, Natasha M Glover
Bringing science to the public in the light of evolution. Biology methods & protocols 8 (1) (2023)
David Moi, Christophe Dessimoz
Phylogenetic profiling in eukaryotes comes of age. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree. Nature biotechnology (2023)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree. Nature biotechnology (2023)
David Moi, Christophe Dessimoz
Phylogenetic profiling in eukaryotes comes of age. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree. Nature biotechnology (2023)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree. Nature biotechnology (2023)
Adrian M Altenhoff, Alex Warwick Vesztrocy, Charles Bernard, Clement-Marie Train, Alina Nicheperovich, Silvia Prieto Baños, Irene Julca, David Moi, Yannis Nevers, Sina Majidian, Christophe Dessimoz, Natasha M Glover
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem. Nucleic acids research (2023)
Ana Lopez Vazquez, Laure Allenbach Petrolati, Martina Legris, Christophe Dessimoz, Edwin R Lampugnani, Natasha M Glover, Christian Fankhauser
Protein S-acylation controls the subcellular localization and biological activity of PHYTOCHROME KINASE SUBSTRATE. The Plant cell (2023)
Marie-Claude Blatter, Monique Zahn-Zabal, Samuel Moix, Béatrice Pichon, Christophe Dessimoz, Natasha M Glover
Bringing science to the public in the light of evolution. Biology methods & protocols 8 (1) (2023)
David Moi, Christophe Dessimoz
Phylogenetic profiling in eukaryotes comes of age. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Read2Tree: scalable and accurate phylogenetic trees from raw reads. bioRxiv : the preprint server for biology (2022)
Natasha M Glover, Shaoline Sheppard, Christophe Dessimoz
Homoeolog Inference Methods Requiring Bidirectional Best Hits or Synteny Miss Many Pairs. Genome biology and evolution 13 (6) (2022)
David Viktor Dylus, Adrian M Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz
Read2Tree: scalable and accurate phylogenetic trees from raw reads. bioRxiv : the preprint server for biology (2022)
Yannis Nevers, Tamsin E M Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Piližota, Cristina Guijarro-Clarke, null null, Wataru Iwasaki, Odile Lecompte, Erik L L Sonnhammer, David S Roos, Toni Gabaldón, David Thybert, Paul D Thomas, Yanhui Hu, David M Emms, Elspeth A Bruford, Salvador Capella, Maria J Martin, Christophe Dessimoz, Adrian Altenhoff
The Quest for Orthologs orthology benchmark service in 2022. Nucleic acids research (2022)
Alina Nicheperovich, Adrian M Altenhoff, Christophe Dessimoz, Sina Majidian
OMAMO: orthology-based alternative model organism selection. Bioinformatics (Oxford, England) 38 (10) (2022)
Monique Zahn-Zabal, Christophe Dessimoz, Natasha M Glover
Identifying orthologs with OMA: A primer. F1000Research 9 (2020)
Liam P Shaw, Alethea D Wang, David Dylus, Magda Meier, Grega Pogacnik, Christophe Dessimoz, Francois Balloux
The phylogenetic range of bacterial and viral pathogens of vertebrates. Molecular ecology 29 (17) (2020)
Richard Benton, Christophe Dessimoz, David Moi
A putative origin of the insect chemosensory receptor superfamily in the last common eukaryotic ancestor. eLife 9 (2020)
David Moi, Laurent Kilchoer, Pablo S Aguilar, Christophe Dessimoz
Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes. PLoS computational biology 16 (7) (2020)
David Dylus, Yannis Nevers, Adrian M Altenhoff, Antoine Gürtler, Christophe Dessimoz, Natasha M Glover
How to build phylogenetic species trees with OMA. F1000Research 9 (2020)
David Dylus, Yannis Nevers, Adrian M Altenhoff, Antoine Gürtler, Christophe Dessimoz, Natasha M Glover
How to build phylogenetic species trees with OMA. F1000Research 9 (2020)
Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL. F1000Research 8 (2019)
Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL. F1000Research (2019)
Klara Kaleb, Alex Warwick Vesztrocy, Adrian M Altenhoff, Christophe Dessimoz
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python. F1000Research (2019)
Natasha M Glover, Adrian Altenhoff, Christophe Dessimoz
Assigning confidence scores to homoeologs using fuzzy logic. PeerJ 6 (2019)
Adrian M Altenhoff, Jeremy Levy, Magdalena Zarowiecki, Bartłomiej Tomiczek, Alex Warwick Vesztrocy, Daniel A Dalquen, Steven Müller, Maximilian J Telford, Natasha M Glover, David Dylus, Christophe Dessimoz
OMA standalone: orthology inference among public and custom genomes and transcriptomes. Genome research 29 (7) (2019)
Klara Kaleb, Alex Warwick Vesztrocy, Adrian M Altenhoff, Christophe Dessimoz
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python. F1000Research 8 (2019)
Georgia Tsagkogeorga, Steven Müller, Christophe Dessimoz, Stephen J Rossiter
Comparative genomics reveals contraction in olfactory receptor genes in bats. Scientific reports 7 (1) (2017)
Adrian M Altenhoff, Brigitte Boeckmann, Salvador Capella-Gutierrez, Daniel A Dalquen, Todd DeLuca, Sofia Kirke Forslund-Startceva, Jaime Huerta-Cepas, Benjamin Linard, Cécile Pereira, Leszek P Pryszcz, Fabian Schreiber, Alan Sousa da Silva, Damian Szklarczyk, Clément-Marie Train, Peer Bork, Odile Lecompte, Christian von Mering, Ioannis Xenarios, Kimmen Sjölander, Lars Juhl Jensen, Maria J Martin, Matthieu Muffato, null null, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, Christophe Dessimoz
Standardized benchmarking in the quest for orthologs. Nature methods 13 (5) (2016)
Ge Tan, Manuel Gil, Ari P Löytynoja, Nick Goldman, Christophe Dessimoz
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks. Proceedings of the National Academy of Sciences of the United States of America 112 (2) (2015)
Xinxia Peng, Jessica Alfoldi, Kevin Gori, Amie J Eisfeld, Scott R Tyler, Jennifer Tisoncik-Go, David Brawand, G Lynn Law, Nives Skunca, Masato Hatta, David J Gasper, Sara M Kelly, Jean Chang, Matthew J Thomas, Jeremy Johnson, Aaron M Berlin, Marcia Lara, Pamela Russell, Ross Swofford, Jason Turner-Maier, Sarah Young, Thibaut Hourlier, Bronwen Aken, Steve Searle, Xingshen Sun, Yaling Yi, M Suresh, Terrence M Tumpey, Adam Siepel, Samantha M Wisely, Christophe Dessimoz, Yoshihiro Kawaoka, Bruce W Birren, Kerstin Lindblad-Toh, Federica Di Palma, John F Engelhardt, Robert E Palermo, Michael G Katze
The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease. Nature biotechnology 32 (12) (2014)

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Publication Activity (10 Years)

Top Topics

Top Venues

Christophe Dessimoz