Ioannis Xenarios

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 21

Top Topics

Genetic Diversity

Arabidopsis Thaliana

Top Venues

Bioinformatics advances

NAR genomics and bioinformatics

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Rick Wertenbroek, Robin J Hofmeister, Ioannis Xenarios, Yann Thoma, Olivier Delaneau
Improving population scale statistical phasing with whole-genome sequencing data. PLoS genetics 20 (7) (2024)
Rick Wertenbroek, Robin J Hofmeister, Ioannis Xenarios, Yann Thoma, Olivier Delaneau
Improving population scale statistical phasing with whole-genome sequencing data. PLoS genetics 20 (7) (2024)
Rick Wertenbroek, Robin J Hofmeister, Ioannis Xenarios, Yann Thoma, Olivier Delaneau
Improving population scale statistical phasing with whole-genome sequencing data. PLoS genetics 20 (7) (2024)
Rick Wertenbroek, Robin J Hofmeister, Ioannis Xenarios, Yann Thoma, Olivier Delaneau
Improving population scale statistical phasing with whole-genome sequencing data. PLoS genetics 20 (7) (2024)
Rick Wertenbroek, Ioannis Xenarios, Yann Thoma, Olivier Delaneau
Exploiting parallelization in positional Burrows-Wheeler transform (PBWT) algorithms for efficient haplotype matching and compression. Bioinformatics advances 3 (1) (2023)
Rick Wertenbroek, Ioannis Xenarios, Yann Thoma, Olivier Delaneau
Exploiting parallelization in positional Burrows-Wheeler transform (PBWT) algorithms for efficient haplotype matching and compression. Bioinformatics advances 3 (1) (2023)
Alysha S Taylor, Dinis Barros, Nastassia Gobet, Thierry Schuepbach, Branduff McAllister, Lorene Aeschbach, Emma L Randall, Evgeniya Trofimenko, Eleanor R Heuchan, Paula Barszcz, Marc Ciosi, Joanne Morgan, Nathaniel J Hafford-Tear, Alice E Davidson, Thomas H Massey, Darren G Monckton, Lesley Jones, Registry Investigators Of The European Huntington's Disease Network, Ioannis Xenarios, Vincent Dion
Repeat Detector: versatile sizing of expanded tandem repeats and identification of interrupted alleles from targeted DNA sequencing. NAR genomics and bioinformatics 4 (4) (2022)
Nastassia Gobet, Maxime Jan, Paul Franken, Ioannis Xenarios
Towards mouse genetic-specific RNA-sequencing read mapping. PLoS computational biology 18 (9) (2022)
Sophie Rodius, Niek de Klein, Céline Jeanty, Hector Sanchez-Iranzo, Isaac Crespo, Mark Ibberson, Ioannis Xenarios, Gunnar Dittmar, Nadia Mercader, Simone P Niclou, Francisco Azuaje
Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity. Scientific reports 10 (1) (2020)
Anne Gleizes, Florian Laubscher, Nicolas Guex, Christian Iseli, Thomas Junier, Samuel Cordey, Jacques Fellay, Ioannis Xenarios, Laurent Kaiser, Philippe Le Mercier
Virosaurus A Reference to Explore and Capture Virus Genetic Diversity. Viruses 12 (11) (2020)
Gustavo A Ruiz Buendía, Marion Leleu, Flavia Marzetta, Ludovica Vanzan, Jennifer Yihong Tan, Victor Ythier, Emma L Randall, Ana Claudia Marques, Tuncay Baubec, Rabih Murr, Ioannis Xenarios, Vincent Dion
Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion. Science advances 6 (27) (2020)
Pierre-Olivier Duroy, Sandra Bosshard, Emanuel Schmid-Siegert, Samuel Neuenschwander, Ghislaine Arib, Philippe Lemercier, Jacqueline Masternak, Lucien Roesch, Flavien Buron, Pierre-Alain Girod, Ioannis Xenarios, Nicolas Mermod
Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release. Biotechnology and bioengineering 117 (2) (2019)
Sten Ilmjärv, Fiona Augsburger, Jerven Tjalling Bolleman, Robin Liechti, Alan James Bridge, Jenny Sandström, Vincent Jaquet, Ioannis Xenarios, Karl-Heinz Krause
Navigating in vitro bioactivity data by investigating available resources using model compounds. Scientific data 6 (1) (2019)
Jules Deforges, Rodrigo Siqueira Reis, Philippe Jacquet, Shaoline Sheppard, Veerendra P Gadekar, Gene Hart-Smith, Andrea Tanzer, Ivo L Hofacker, Christian Iseli, Ioannis Xenarios, Yves Poirier
Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs. Plant physiology 180 (1) (2019)
Janos L Tanyi, Sara Bobisse, Eran Ophir, Sandra Tuyaerts, Annalisa Roberti, Raphaël Genolet, Petra Baumgartner, Brian J Stevenson, Christian Iseli, Denarda Dangaj, Brian J Czerniecki, Aikaterini Semilietof, Julien Racle, Alexandra Michel, Ioannis Xenarios, Cheryl Chiang, Dimitri S Monos, Drew A Torigian, Harvey L Nisenbaum, Olivier Michielin, Carl H June, Bruce L Levine, Daniel J Powell, David Gfeller, Rosemarie Mick, Urania Dafni, Vincent Zoete, Alexandre Harari, Sergio A Quezada, Lana Elias Kandalaft
Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer. Science translational medicine 10 (436) (2019)
Daniel Patrick Pease, Claudia Scheckel, Elke Schaper, Valeria Eckhardt, Marc Emmenegger, Ioannis Xenarios, Adriano Aguzzi
Genome-wide identification of microRNAs regulating the human prion protein. Brain pathology (Zurich, Switzerland) 29 (2) (2018)
Olivier Michaud, Anne-Sophie Fiorucci, Ioannis Xenarios, Christian Fankhauser
Local auxin production underlies a spatially restricted neighbor-detection response in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 114 (28) (2017)
Emanuel Schmid-Siegert, Namrata Sarkar, Christian Iseli, Sandra Calderon, Caroline Gouhier-Darimont, Jacqueline Chrast, Pietro Cattaneo, Frédéric Schütz, Laurent Farinelli, Marco Pagni, Michel Schneider, Jérémie Voumard, Michel Jaboyedoff, Christian Fankhauser, Christian S Hardtke, Laurent Keller, John R Pannell, Alexandre Reymond, Marc Robinson-Rechavi, Ioannis Xenarios, Philippe Reymond
Low number of fixed somatic mutations in a long-lived oak tree. Nature plants 3 (12) (2017)
Adrian M Altenhoff, Brigitte Boeckmann, Salvador Capella-Gutierrez, Daniel A Dalquen, Todd DeLuca, Sofia Kirke Forslund-Startceva, Jaime Huerta-Cepas, Benjamin Linard, Cécile Pereira, Leszek P Pryszcz, Fabian Schreiber, Alan Sousa da Silva, Damian Szklarczyk, Clément-Marie Train, Peer Bork, Odile Lecompte, Christian von Mering, Ioannis Xenarios, Kimmen Sjölander, Lars Juhl Jensen, Maria J Martin, Matthieu Muffato, null null, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, Christophe Dessimoz
Standardized benchmarking in the quest for orthologs. Nature methods 13 (5) (2016)
Isaac Crespo, Lou Götz, Robin Liechti, George Coukos, Marie-Agnès Doucey, Ioannis Xenarios
Identifying biological mechanisms for favorable cancer prognosis using non-hypothesis-driven iterative survival analysis. NPJ systems biology and applications 2 (2016)
Markus V Kohnen, Emanuel Schmid-Siegert, Martine Trevisan, Laure Allenbach Petrolati, Fabien Sénéchal, Patricia Müller-Moulé, Julin N Maloof, Ioannis Xenarios, Christian Fankhauser
Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth. The Plant cell 28 (12) (2016)