Francois Balloux (François Balloux)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Topics

Multidrug Resistant

Network Analysis

Klebsiella Pneumoniae

Top Venues

Nature communications

Nature ecology & evolution

Genome medicine

Molecular ecology

This page only lists publications with an associated author ORCID identifier.

Publications

Ruobing Wang, Anru Zhang, Shijun Sun, Guankun Yin, Xingyu Wu, Qi Ding, Qi Wang, Fengning Chen, Shuyi Wang, Lucy van Dorp, Yawei Zhang, Longyang Jin, Xiaojuan Wang, Francois Balloux, Hui Wang
Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64. Nature communications 15 (1) (2024)
Cedric C S Tan, Lucy van Dorp, Francois Balloux
The evolutionary drivers and correlates of viral host jumps. Nature ecology & evolution 8 (5) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Cedric C S Tan, Lucy van Dorp, Francois Balloux
The evolutionary drivers and correlates of viral host jumps. Nature ecology & evolution 8 (5) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Cedric C S Tan, Lucy van Dorp, Francois Balloux
The evolutionary drivers and correlates of viral host jumps. Nature ecology & evolution 8 (5) (2024)
Ruobing Wang, Anru Zhang, Shijun Sun, Guankun Yin, Xingyu Wu, Qi Ding, Qi Wang, Fengning Chen, Shuyi Wang, Lucy van Dorp, Yawei Zhang, Longyang Jin, Xiaojuan Wang, Francois Balloux, Hui Wang
Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64. Nature communications 15 (1) (2024)
Cedric C S Tan, Lucy van Dorp, Francois Balloux
The evolutionary drivers and correlates of viral host jumps. Nature ecology & evolution (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Ruobing Wang, Anru Zhang, Shijun Sun, Guankun Yin, Xingyu Wu, Qi Ding, Qi Wang, Fengning Chen, Shuyi Wang, Lucy van Dorp, Yawei Zhang, Longyang Jin, Xiaojuan Wang, Francois Balloux, Hui Wang
Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64. Nature communications 15 (1) (2024)
Ruobing Wang, Anru Zhang, Shijun Sun, Guankun Yin, Xingyu Wu, Qi Ding, Qi Wang, Fengning Chen, Shuyi Wang, Lucy van Dorp, Yawei Zhang, Longyang Jin, Xiaojuan Wang, Francois Balloux, Hui Wang
Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64. Nature communications 15 (1) (2024)
Ruobing Wang, Anru Zhang, Shijun Sun, Guankun Yin, Xingyu Wu, Qi Ding, Qi Wang, Fengning Chen, Shuyi Wang, Lucy van Dorp, Yawei Zhang, Longyang Jin, Xiaojuan Wang, Francois Balloux, Hui Wang
Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64. Nature communications 15 (1) (2024)
Ashleigh F Marshall, Francois Balloux, Nicola Hemmings, Patricia Brekke
Systematic review of avian hatching failure and implications for conservation. Biological reviews of the Cambridge Philosophical Society (2023)
Cedric C S Tan, Jahcub Trew, Thomas P Peacock, Kai Yi Mok, Charlie Hart, Kelvin Lau, Dongchun Ni, C David L Orme, Emma Ransome, William D Pearse, Christopher M Coleman, Dalan Bailey, Nazia Thakur, Jessica L Quantrill, Ksenia Sukhova, Damien Richard, Laura Kahane, Guy Woodward, Thomas Bell, Lisa Worledge, Joe Nunez-Mino, Wendy S Barclay, Lucy van Dorp, Francois Balloux, Vincent Savolainen
Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential. Nature communications 14 (1) (2023)
Suresh V Kuchipudi, Cedric C S Tan, Lucy van Dorp, Maureen Lichtveld, Bradley Pickering, Jeff Bowman, Samira Mubareka, Francois Balloux
Coordinated surveillance is essential to monitor and mitigate the evolutionary impacts of SARS-CoV-2 spillover and circulation in animal hosts. Nature ecology & evolution (2023)
Cedric C S Tan, Jahcub Trew, Thomas P Peacock, Kai Yi Mok, Charlie Hart, Kelvin Lau, Dongchun Ni, C David L Orme, Emma Ransome, William D Pearse, Christopher M Coleman, Dalan Bailey, Nazia Thakur, Jessica L Quantrill, Ksenia Sukhova, Damien Richard, Laura Kahane, Guy Woodward, Thomas Bell, Lisa Worledge, Joe Nunez-Mino, Wendy S Barclay, Lucy van Dorp, Francois Balloux, Vincent Savolainen
Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential. Nature communications 14 (1) (2023)
Cedric C S Tan, Jahcub Trew, Thomas P Peacock, Kai Yi Mok, Charlie Hart, Kelvin Lau, Dongchun Ni, C David L Orme, Emma Ransome, William D Pearse, Christopher M Coleman, Dalan Bailey, Nazia Thakur, Jessica L Quantrill, Ksenia Sukhova, Damien Richard, Laura Kahane, Guy Woodward, Thomas Bell, Lisa Worledge, Joe Nunez-Mino, Wendy S Barclay, Lucy van Dorp, Francois Balloux, Vincent Savolainen
Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential. Nature communications 14 (1) (2023)
Cedric C S Tan, Jahcub Trew, Thomas P Peacock, Kai Yi Mok, Charlie Hart, Kelvin Lau, Dongchun Ni, C David L Orme, Emma Ransome, William D Pearse, Christopher M Coleman, Dalan Bailey, Nazia Thakur, Jessica L Quantrill, Ksenia Sukhova, Damien Richard, Laura Kahane, Guy Woodward, Thomas Bell, Lisa Worledge, Joe Nunez-Mino, Wendy S Barclay, Lucy van Dorp, Francois Balloux, Vincent Savolainen
Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential. Nature communications 14 (1) (2023)
Suresh V Kuchipudi, Cedric C S Tan, Lucy van Dorp, Maureen Lichtveld, Bradley Pickering, Jeff Bowman, Samira Mubareka, Francois Balloux
Author Correction: Coordinated surveillance is essential to monitor and mitigate the evolutionary impacts of SARS-CoV-2 spillover and circulation in animal hosts. Nature ecology & evolution (2023)
Mislav Acman, Ruobing Wang, Lucy van Dorp, Liam P Shaw, Qi Wang, Nina Luhmann, Yuyao Yin, Shijun Sun, Hongbin Chen, Hui Wang, Francois Balloux
Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene bla NDM . Nature communications 13 (1) (2022)
Cedric C S Tan, Su Datt Lam, Damien Richard, Christopher J Owen, Dorothea Berchtold, Christine A Orengo, Meera Surendran Nair, Suresh V Kuchipudi, Vivek Kapur, Lucy van Dorp, Francois Balloux
Transmission of SARS-CoV-2 from humans to animals and potential host adaptation. Nature communications 13 (1) (2022)
Francois Balloux, Cedric Tan, Leo Swadling, Damien Richard, Charlotte Jenner, Mala Maini, Lucy van Dorp
The past, current and future epidemiological dynamic of SARS-CoV-2. Oxford open immunology 3 (1) (2022)
Leo Swadling, Mariana O Diniz, Nathalie M Schmidt, Oliver E Amin, Aneesh Chandran, Emily Shaw, Corinna Pade, Joseph M Gibbons, Nina Le Bert, Anthony T Tan, Anna Jeffery-Smith, Cedric C S Tan, Christine Y L Tham, Stephanie Kucykowicz, Gloryanne Aidoo-Micah, Joshua Rosenheim, Jessica Davies, Marina Johnson, Melanie P Jensen, George Joy, Laura E McCoy, Ana M Valdes, Benjamin M Chain, David Goldblatt, Daniel M Altmann, Rosemary J Boyton, Charlotte Manisty, Thomas A Treibel, James C Moon, null null, Lucy van Dorp, Francois Balloux, Áine McKnight, Mahdad Noursadeghi, Antonio Bertoletti, Mala K Maini
Pre-existing polymerase-specific T cells expand in abortive seronegative SARS-CoV-2. Nature (2021)
Arturo Torres Ortiz, Jorge Coronel, Julia Rios Vidal, Cesar Bonilla, David A J Moore, Robert H Gilman, Francois Balloux, Onn Min Kon, Xavier Didelot, Louis Grandjean
Genomic signatures of pre-resistance in Mycobacterium tuberculosis. Nature communications 12 (1) (2021)
Louis Grandjean, Joha Monteserin, Robert Gilman, Julia Pauschardt, Sakib Rokadiya, Cesar Bonilla, Viviana Ritacco, Julia Rios Vidal, Julian Parkhill, Sharon Peacock, David Aj Moore, Francois Balloux
Association between bacterial homoplastic variants and radiological pathology in tuberculosis. Thorax 75 (7) (2020)
Mislav Acman, Lucy van Dorp, Joanne M Santini, Francois Balloux
Large-scale network analysis captures biological features of bacterial plasmids. Nature communications 11 (1) (2020)
Lucy van Dorp, Damien Richard, Cedric C S Tan, Liam P Shaw, Mislav Acman, Francois Balloux
No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2. Nature communications 11 (1) (2020)
Liam P Shaw, Alethea D Wang, David Dylus, Magda Meier, Grega Pogacnik, Christophe Dessimoz, Francois Balloux
The phylogenetic range of bacterial and viral pathogens of vertebrates. Molecular ecology 29 (17) (2020)
Damien Richard, Olivier Pruvost, Francois Balloux, Claudine Boyer, Adrien Rieux, Pierre Lefeuvre
Time-calibrated genomic evolution of a monomorphic bacterium during its establishment as an endemic crop pathogen. Molecular ecology 30 (8) (2020)
Liam P Shaw, Hassan Bassam, Chris P Barnes, A Sarah Walker, Nigel Klein, Francois Balloux
Modelling microbiome recovery after antibiotics using a stability landscape framework. The ISME journal 13 (7) (2019)
Simon J O'Hanlon, Adrien Rieux, Rhys A Farrer, Gonçalo M Rosa, Bruce Waldman, Arnaud Bataille, Tiffany A Kosch, Kris A Murray, Balázs Brankovics, Matteo Fumagalli, Michael D Martin, Nathan Wales, Mario Alvarado-Rybak, Kieran A Bates, Lee Berger, Susanne Böll, Lola M Brookes, Frances Clare, Elodie A Courtois, Andrew A Cunningham, Thomas M Doherty-Bone, Pria Ghosh, David J Gower, William E Hintz, Jacob Höglund, Thomas S Jenkinson, Chun-Fu Lin, Anssi Laurila, Adeline Loyau, An Martel, Sara Meurling, Claude Miaud, Pete Minting, Frank Pasmans, Emilio Valbuena-Ureña, Benedikt R Schmidt, Jennifer M G Shelton, Lee F Skerratt, Freya Smith, Claudio Azat, Matteo Spagnoletti, Giulia Tessa, Luís Felipe Toledo, Andrés Valenzuela-Sánchez, Ruhan Verster, Judit Vörös, Rebecca J Webb, Claudia Wierzbicki, Emma Wombwell, Kelly Raquel Zamudio, David M Aanensen, Timothy Y James, Marcus Thomas Pius Gilbert, Che Weldon, Jaime Bosch, Francois Balloux, Trenton W J Garner, Matthew C Fisher
Recent Asian origin of chytrid fungi causing global amphibian declines. Science (New York, N.Y.) 360 (6389) (2018)
Ruobing Wang, Lucy van Dorp, Liam P Shaw, Phelim Bradley, Qi Wang, Xiaojuan Wang, Longyang Jin, Qing Zhang, Yuqing Liu, Adrien Rieux, Thamarai Dorai-Schneiders, Lucy Anne Weinert, Zamin Iqbal, Xavier Didelot, Hui Wang, Francois Balloux
The global distribution and spread of the mobilized colistin resistance gene mcr-1. Nature communications 9 (1) (2018)
Ola Brønstad Brynildsrud, Caitlin S Pepperell, Philip Suffys, Louis Grandjean, Johana Monteserin, Nadia Debech, Jon Bohlin, Kristian Alfsnes, John O-H Pettersson, Ingerid Kirkeleite, Fatima Fandinho, Marcia Aparecida da Silva, Joao Perdigao, Isabel Portugal, Miguel Viveiros, Taane Clark, Maxine Caws, Sarah J Dunstan, Phan Vuong Khac Thai, Beatriz Lopez, Viviana Ritacco, Andrew Kitchen, Tyler S Brown, Dick van Soolingen, Mary B O'Neill, Kathryn E Holt, Edward J Feil, Barun Mathema, Francois Balloux, Vegard Eldholm
Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation. Science advances 4 (10) (2018)
Daniel Charlton Jeffares, Clemency Jolly, Mimoza Hoti, Doug Speed, Liam Shaw, Charalampos Rallis, Francois Balloux, Christophe Dessimoz, Jürg Bähler, Fritz J Sedlazeck
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast. Nature communications 8 (2017)