Daniel J Deredge (Daniel Deredge)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 15

Top Topics

Gas Chromatography

Molecular Dynamics

Quality Control

Mass Spectrometry

Top Venues

Nature communications

Living journal of computational molecular science

Analytical chemistry

The Journal of biological chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Kyle C Kihn, Olivia Purdy, Vincent Lowe, Lenka Slachtova, Ally K Smith, Paul Shapiro, Daniel J Deredge
Integration of Hydrogen-Deuterium Exchange Mass Spectrometry with Molecular Dynamics Simulations and Ensemble Reweighting Enables High Resolution Protein-Ligand Modeling. Journal of the American Society for Mass Spectrometry (2024)
Beatriz Trastoy, Jonathan J Du, Javier O Cifuente, Lorena Rudolph, Mikel García-Alija, Erik H Klontz, Daniel J Deredge, Nazneen Sultana, Chau G Huynh, Maria W Flowers, Chao Li, Diego E Sastre, Lai-Xi Wang, Francisco Corzana, Alvaro Mallagaray, Eric John Sundberg, Marcelo E Guerin
Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases. Nature communications 14 (1) (2023)
Beatriz Trastoy, Jonathan J Du, Javier O Cifuente, Lorena Rudolph, Mikel García-Alija, Erik H Klontz, Daniel J Deredge, Nazneen Sultana, Chau G Huynh, Maria W Flowers, Chao Li, Diego E Sastre, Lai-Xi Wang, Francisco Corzana, Alvaro Mallagaray, Eric John Sundberg, Marcelo E Guerin
Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases. Nature communications 14 (1) (2023)
Caroline N Smith, Kyle Kihn, Zachary A Williamson, K Martin Chow, Louis B Hersh, Konstantin V Korotkov, Daniel J Deredge, Jessica S Blackburn
Development and characterization of nanobodies that specifically target the oncogenic Phosphatase of Regenerating Liver-3 (PRL-3) and impact its interaction with a known binding partner, CNNM3. PloS one 18 (5) (2023)
Beatriz Trastoy, Jonathan J Du, Javier O Cifuente, Lorena Rudolph, Mikel García-Alija, Erik H Klontz, Daniel J Deredge, Nazneen Sultana, Chau G Huynh, Maria W Flowers, Chao Li, Diego E Sastre, Lai-Xi Wang, Francisco Corzana, Alvaro Mallagaray, Eric John Sundberg, Marcelo E Guerin
Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases. Nature communications 14 (1) (2023)
Paul Suhwan Lee, Richard T Bradshaw, Fabrizio Marinelli, Kyle C Kihn, Ally K Smith, Patrick L Wintrode, Daniel J Deredge, José D Faraldo-Gómez, Lucy R Forrest
Interpreting Hydrogen-Deuterium Exchange Experiments with Molecular Simulations: Tutorials and Applications of the HDXer Ensemble Reweighting Software [Article v1.0]. Living journal of computational molecular science 3 (1) (2022)
Haarin Chun, James H Kurasawa, Philip Olivares, Ekaterina S Marakasova, Svetlana A Shestopal, Gabriela U Hassink, Elena Karnaukhova, Mary Migliorini, Juliet O Obi, Ally K Smith, Patrick L Wintrode, Prasannavenkatesh Durai, Keunwan Park, Daniel J Deredge, Dudley K Strickland, Andrey G Sarafanov
Characterization of interaction between blood coagulation factor VIII and LRP1 suggests dynamic binding by alternating complex contacts. Journal of thrombosis and haemostasis : JTH 20 (10) (2022)
Paul Suhwan Lee, Richard T Bradshaw, Fabrizio Marinelli, Kyle C Kihn, Ally K Smith, Patrick L Wintrode, Daniel J Deredge, José D Faraldo-Gómez, Lucy R Forrest
Interpreting Hydrogen-Deuterium Exchange Experiments with Molecular Simulations: Tutorials and Applications of the HDXer Ensemble Reweighting Software [Article v1.0]. Living journal of computational molecular science 3 (1) (2022)
Paul Suhwan Lee, Richard T Bradshaw, Fabrizio Marinelli, Kyle C Kihn, Ally K Smith, Patrick L Wintrode, Daniel J Deredge, José D Faraldo-Gómez, Lucy R Forrest
Interpreting Hydrogen-Deuterium Exchange Experiments with Molecular Simulations: Tutorials and Applications of the HDXer Ensemble Reweighting Software [Article v1.0]. Living journal of computational molecular science 3 (1) (2022)
Asaminew H Aytenfisu, Daniel J Deredge, Erik H Klontz, Jonathan J Du, Eric John Sundberg, Alexander D MacKerell
Insights into substrate recognition and specificity for IgG by Endoglycosidase S2. PLoS computational biology 17 (7) (2021)
Garrick Centola, Daniel J Deredge, Kellie Hom, Yong Ai, Alecia T Dent, Fengtian Xue, Angela Wilks
Gallium(III)-Salophen as a Dual Inhibitor of Pseudomonas aeruginosa Heme Sensing and Iron Acquisition. ACS infectious diseases 6 (8) (2020)
Jeffrey W Hudgens, Elyssia S Gallagher, Ioannis Karageorgos, Kyle W Anderson, James J Filliben, Richard Y-C Huang, Guodong Chen, George M Bou-Assaf, Alfonso Espada, Michael J Chalmers, Eduardo Harguindey, Hui-Min Zhang, Benjamin T Walters, Jennifer Zhang, John Venable, Caitlin Steckler, Inhee Park, Ansgar Brock, Xiaojun Lu, Ratnesh Pandey, Srinath Krishnamurthy, Ganesh Srinivasan Anand, Sasidhar N Nirudodhi, Justin B Sperry, Jason C Rouse, James A Carroll, Kasper Dyrberg Rand, Ulrike Leurs, David D Weis, Mohammed A Al-Naqshabandi, Tyler S Hageman, Daniel J Deredge, Patrick L Wintrode, Malvina Papanastasiou, John D Lambris, Sheng Li, Sarah Urata
Interlaboratory Comparison of Hydrogen-Deuterium Exchange Mass Spectrometry Measurements of the Fab Fragment of NISTmAb. Analytical chemistry 91 (11) (2019)
Daniel J Deredge, Patrick L Wintrode, Mohan E Tulapurkar, Ashish Nagarsekar, Yinghua Zhang, David J Weber, Paul Shapiro, Jeffrey D Hasday
A temperature-dependent conformational shift in p38α MAPK substrate-binding region associated with changes in substrate phosphorylation profile. The Journal of biological chemistry 294 (34) (2019)
Marc B Taraban, Daniel J Deredge, Margaret E Smith, Katharine T Briggs, Yu Li, Zhong-Xing Jiang, Patrick L Wintrode, Yihua Bruce Yu
Monitoring dendrimer conformational transition using 19 F and 1 H2 O NMR. Magnetic resonance in chemistry : MRC 57 (10) (2019)
Upneet Kaur, Danté T Johnson, Emily E Chea, Daniel J Deredge, Jessica A Espino, Lisa M Jones
Evolution of Structural Biology through the Lens of Mass Spectrometry. Analytical chemistry 91 (1) (2018)