Living journal of computational molecular science

Keyphrases

Publications

volume 4, number 1, 2022

David F Hahn, Christopher I Bayly, Hannah E Bruce Macdonald, John D Chodera, Antonia S J S Mey, David L Mobley, Laura Perez Benito, Christina E M Schindler, Gary John Tresadern, Gregory L Warren
Best practices for constructing, preparing, and evaluating protein-ligand binding affinity benchmarks [Article v0.1]. Living journal of computational molecular science 4 (1) (2022)
Jack A Henderson, Ruibin Liu, Robert C Harris, Yandong Huang, Vinicius Martins de Oliveira, Jana Shen
A Guide to the Continuous Constant pH Molecular Dynamics Methods in Amber and CHARMM [Article v1.0]. Living journal of computational molecular science 4 (1) (2022)
Jack A Henderson, Ruibin Liu, Robert C Harris, Yandong Huang, Vinicius Martins de Oliveira, Jana Shen
A Guide to the Continuous Constant pH Molecular Dynamics Methods in Amber and CHARMM [Article v1.0]. Living journal of computational molecular science 4 (1) (2022)

volume 3, number 1, 2022

volume 1, number 2, 2019

Rodrigo Galindo-Murillo, Thomas E Cheatham
Lessons learned in atomistic simulation of double-stranded DNA: Solvation and salt concerns [Article v1.0]. Living journal of computational molecular science 1 (2) (2019)
Anthony T Bogetti, Barmak Mostofian, Alex Dickson, A J Pratt, Ali S Saglam, Page O Harrison, Joshua L Adelman, Max Dudek, Paul A Torrillo, Alex J DeGrave, Upendra Adhikari, Matthew C Zwier, Daniel M Zuckerman, Lillian T Chong
A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]. Living journal of computational molecular science 1 (2) (2019)

volume 1, number 1, 2018

Efrem Braun, Justin Gilmer, Jacob I Monroe, Samarjeet Prasad, Daniel M Zuckerman
Best Practices for Foundations in Molecular Simulations [Article v1.0]. Living journal of computational molecular science 1 (1) (2018)
Alan Grossfield, Paul N Patrone, Daniel R Roe, Andrew J Schultz, Daniel W Siderius, Daniel M Zuckerman
Best Practices for Quantification of Uncertainty and Sampling Quality in Molecular Simulations [Article v1.0]. Living journal of computational molecular science 1 (1) (2018)