Daniel Domingo-Fernández

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 18

Top Venues

Journal of natural products

NPJ systems biology and applications

PLoS computational biology

Briefings in bioinformatics

Enveda Therapeutics

Rheinische Friedrich-Wilhelms-Universität Bonn (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Enveda Therapeutics

Germany

Computational Biologist

Fraunhofer-Institut für Algorithmen und Wissenschaftliches Rechnen

Germany

Research Fellow :: Bioinformatics

University of Bonn

Germany

PostDoc :: Smart Data Analytics

University of Bonn

Germany

Lecturer :: B-IT

University of Wisconsin–Green Bay

United States

Research Assistant :: Genetics

Centro Pfizer - Universidad de Granada - Junta de Andalucía de Genómica e Investigación Oncológica

Spain

Internship

Education History

Rheinische Friedrich-Wilhelms-Universität Bonn - Dec 10 2019

Germany

PHD

Rheinische Friedrich-Wilhelms-Universität Bonn

Germany

MSC

University of Leon

Spain

BSC

Publications

Daniel Domingo-Fernández, Yojana Gadiya, António José Preto, Christoph A Krettler, Sarah Mubeen, August Allen, David Healey, Viswa Colluru
Natural Products Have Increased Rates of Clinical Trial Success throughout the Drug Development Process. Journal of natural products 87 (7) (2024)
Daniel Domingo-Fernández, Yojana Gadiya, António José Preto, Christoph A Krettler, Sarah Mubeen, August Allen, David Healey, Viswa Colluru
Natural Products Have Increased Rates of Clinical Trial Success throughout the Drug Development Process. Journal of natural products 87 (7) (2024)
Daniel Domingo-Fernández, Yojana Gadiya, António José Preto, Christoph A Krettler, Sarah Mubeen, August Allen, David Healey, Viswa Colluru
Natural Products Have Increased Rates of Clinical Trial Success throughout the Drug Development Process. Journal of natural products 87 (7) (2024)
Daniel Domingo-Fernández, Yojana Gadiya, António José Preto, Christoph A Krettler, Sarah Mubeen, August Allen, David Healey, Viswa Colluru
Natural Products Have Increased Rates of Clinical Trial Success throughout the Drug Development Process. Journal of natural products (2024)
Sarah Mubeen, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
On the influence of several factors on pathway enrichment analysis. Briefings in bioinformatics 23 (3) (2022)
Daniel Rivas-Barragan, Daniel Domingo-Fernández, Yojana Gadiya, David Healey
Ensembles of knowledge graph embedding models improve predictions for drug discovery. Briefings in bioinformatics 23 (6) (2022)
Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil
Integrative data semantics through a model-enabled data stewardship. Bioinformatics (Oxford, England) 38 (15) (2022)
Sarah Mubeen, Daniel Domingo-Fernández, Sara Díaz Del Ser, Dhwani M Solanki, Alpha T Kodamullil, Martin Hofmann-Apitius, Marie-Therese Hopp, Diana Imhof
Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System. Journal of clinical medicine 11 (19) (2022)
Daniel Domingo-Fernández, Yojana Gadiya, Abhishek Patel, Sarah Mubeen, Daniel Rivas-Barragan, Chris W Diana, Biswapriya Biswavas Misra, David Healey, Joe Rokicki, Viswa Colluru
Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery. PLoS computational biology 18 (2) (2022)
Sarah Mubeen, Vinay Srinivas Bharadhwaj, Yojana Gadiya, Martin Hofmann-Apitius, Alpha Tom Kodamullil, Daniel Domingo-Fernández
DecoPath: a web application for decoding pathway enrichment analysis. NAR genomics and bioinformatics 3 (3) (2021)
Sepehr Golriz Khatami, Sarah Mubeen, Vinay Srinivas Bharadhwaj, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures. NPJ systems biology and applications 7 (1) (2021)
Daniel Domingo-Fernández, Shounak Baksi, Bruce Schultz, Yojana Gadiya, Reagon Karki, Tamara Raschka, Christian Ebeling, Martin Hofmann-Apitius, Alpha Tom Kodamullil
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology. Bioinformatics (Oxford, England) 37 (9) (2021)
Rebeca Queiroz Figueiredo, Tamara Raschka, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Sarah Mubeen, Daniel Domingo-Fernández
Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms. Nucleic acids research 49 (14) (2021)
Daniel Rivas-Barragan, Sarah Mubeen, Francesc Guim Bernat, Martin Hofmann-Apitius, Daniel Domingo-Fernández
Drug2ways: Reasoning over causal paths in biological networks for drug discovery. PLoS computational biology 16 (12) (2020)
Daniel Domingo-Fernández, Charles Tapley Hoyt, Carlos Bobis-Álvarez, Josep Marín-Llaó, Martin Hofmann-Apitius
Erratum: Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. NPJ systems biology and applications 5 (2019)
Daniel Domingo-Fernández, Sarah Mubeen, Josep Marín-Llaó, Charles Tapley Hoyt, Martin Hofmann-Apitius
PathMe: merging and exploring mechanistic pathway knowledge. BMC bioinformatics 20 (1) (2019)
Shashank Khanna, Daniel Domingo-Fernández, Anandhi Iyappan, Mohammad Asif Emon, Martin Hofmann-Apitius, Holger Fröhlich
Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer's Disease and Reconstruction of Relevant Biological Mechanisms. Scientific reports 8 (1) (2018)
Daniel Domingo-Fernández, Charles Tapley Hoyt, Carlos Bobis-Álvarez, Josep Marín-Llaó, Martin Hofmann-Apitius
ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. NPJ systems biology and applications 5 (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Daniel Domingo-Fernández