Daniel Domingo-Fernández

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 14

Top Venues

NPJ systems biology and applications

PLoS computational biology

Briefings in bioinformatics

Bioinformatics (Oxford, England)

Enveda Therapeutics

Rheinische Friedrich-Wilhelms-Universität Bonn (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Enveda Therapeutics

Germany

Computational Biologist

Education History

Rheinische Friedrich-Wilhelms-Universität Bonn - Dec 10o 2019

Germany

PHD

Publications

Sarah Mubeen, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
On the influence of several factors on pathway enrichment analysis. Briefings in bioinformatics 23 (3) (2022)
Daniel Rivas-Barragan, Daniel Domingo-Fernández, Yojana Gadiya, David Healey
Ensembles of knowledge graph embedding models improve predictions for drug discovery. Briefings in bioinformatics 23 (6) (2022)
Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil
Integrative data semantics through a model-enabled data stewardship. Bioinformatics (Oxford, England) 38 (15) (2022)
Sarah Mubeen, Daniel Domingo-Fernández, Sara Díaz Del Ser, Dhwani M Solanki, Alpha T Kodamullil, Martin Hofmann-Apitius, Marie-Therese Hopp, Diana Imhof
Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System. Journal of clinical medicine 11 (19) (2022)
Daniel Domingo-Fernández, Yojana Gadiya, Abhishek Patel, Sarah Mubeen, Daniel Rivas-Barragan, Chris W Diana, Biswapriya Biswavas Misra, David Healey, Joe Rokicki, Viswa Colluru
Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery. PLoS computational biology 18 (2) (2022)
Sarah Mubeen, Vinay Srinivas Bharadhwaj, Yojana Gadiya, Martin Hofmann-Apitius, Alpha Tom Kodamullil, Daniel Domingo-Fernández
DecoPath: a web application for decoding pathway enrichment analysis. NAR genomics and bioinformatics 3 (3) (2021)
Sepehr Golriz Khatami, Sarah Mubeen, Vinay Srinivas Bharadhwaj, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures. NPJ systems biology and applications 7 (1) (2021)
Daniel Domingo-Fernández, Shounak Baksi, Bruce Schultz, Yojana Gadiya, Reagon Karki, Tamara Raschka, Christian Ebeling, Martin Hofmann-Apitius, Alpha Tom Kodamullil
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology. Bioinformatics (Oxford, England) 37 (9) (2021)
Rebeca Queiroz Figueiredo, Tamara Raschka, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Sarah Mubeen, Daniel Domingo-Fernández
Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms. Nucleic acids research 49 (14) (2021)
Daniel Rivas-Barragan, Sarah Mubeen, Francesc Guim Bernat, Martin Hofmann-Apitius, Daniel Domingo-Fernández
Drug2ways: Reasoning over causal paths in biological networks for drug discovery. PLoS computational biology 16 (12) (2020)
Daniel Domingo-Fernández, Charles Tapley Hoyt, Carlos Bobis-Álvarez, Josep Marín-Llaó, Martin Hofmann-Apitius
Erratum: Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. NPJ systems biology and applications 5 (2019)
Daniel Domingo-Fernández, Sarah Mubeen, Josep Marín-Llaó, Charles Tapley Hoyt, Martin Hofmann-Apitius
PathMe: merging and exploring mechanistic pathway knowledge. BMC bioinformatics 20 (1) (2019)
Shashank Khanna, Daniel Domingo-Fernández, Anandhi Iyappan, Mohammad Asif Emon, Martin Hofmann-Apitius, Holger Fröhlich
Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer's Disease and Reconstruction of Relevant Biological Mechanisms. Scientific reports 8 (1) (2018)
Daniel Domingo-Fernández, Charles Tapley Hoyt, Carlos Bobis-Álvarez, Josep Marín-Llaó, Martin Hofmann-Apitius
ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. NPJ systems biology and applications 5 (2018)

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Publication Activity (10 Years)

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Daniel Domingo-Fernández