Martin Hofmann-Apitius

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 32

Top Topics

Mild Cognitive Impairment

Top Venues

Nature communications

Database : the journal of biological databases and curation

Scientific reports

Scientific data

This page only lists publications with an associated author ORCID identifier.

Publications

Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database : the journal of biological databases and curation 2024 (2024)
Yojana Gadiya, Simran Shetty, Martin Hofmann-Apitius, Philip Gribbon, Andrea Zaliani
Exploring SureChEMBL from a drug discovery perspective. Scientific data 11 (1) (2024)
Yojana Gadiya, Simran Shetty, Martin Hofmann-Apitius, Philip Gribbon, Andrea Zaliani
Exploring SureChEMBL from a drug discovery perspective. Scientific data 11 (1) (2024)
Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database : the journal of biological databases and curation 2024 (2024)
Yojana Gadiya, Simran Shetty, Martin Hofmann-Apitius, Philip Gribbon, Andrea Zaliani
Exploring SureChEMBL from a drug discovery perspective. Scientific data 11 (1) (2024)
Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database : the journal of biological databases and curation 2024 (2024)
Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database : the journal of biological databases and curation 2024 (2024)
Yojana Gadiya, Simran Shetty, Martin Hofmann-Apitius, Philip Gribbon, Andrea Zaliani
Exploring SureChEMBL from a drug discovery perspective. Scientific data 11 (1) (2024)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Astghik Sargsyan, Philipp Wegner, Stephan Gebel, Abish Kaladharan, Priya Sethumadhavan, Vanessa Lage-Rupprecht, Johannes Darms, Bruce Schultz, Jürgen Klein, Marc Jacobs, Sumit Madan, Martin Hofmann-Apitius, Alpha Tom Kodamullil
The Epilepsy Ontology: a community-based ontology tailored for semantic interoperability and text mining. Bioinformatics advances 3 (1) (2023)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Bide Zhang, Vanessa Lage-Rupprecht, Philipp Wegner, Astghik Sargsyan, Stephan Gebel, Marc Jacobs, Jürgen Klein, Martin Hofmann-Apitius, Alpha Tom Kodamullil
Design of the formalized and integrated Alzheimer's Disease Ontology and its application in retrieving textual data via text mining. Database : the journal of biological databases and curation 2023 (2023)
Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman
Forecasting individual progression trajectories in Alzheimer's disease. Nature communications 14 (1) (2023)
Sarah Mubeen, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
On the influence of several factors on pathway enrichment analysis. Briefings in bioinformatics 23 (3) (2022)
Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil
Integrative data semantics through a model-enabled data stewardship. Bioinformatics (Oxford, England) 38 (15) (2022)
Manuel Lentzen, Sumit Madan, Vanessa Lage-Rupprecht, Lisa Kühnel, Juliane Fluck, Marc Jacobs, Mirja Mittermaier, Martin Witzenrath, Peter Brunecker, Martin Hofmann-Apitius, Joachim Weber, Holger Fröhlich
Critical assessment of transformer-based AI models for German clinical notes. JAMIA open 5 (4) (2022)
Sarah Mubeen, Vinay Srinivas Bharadhwaj, Yojana Gadiya, Martin Hofmann-Apitius, Alpha Tom Kodamullil, Daniel Domingo-Fernández
DecoPath: a web application for decoding pathway enrichment analysis. NAR genomics and bioinformatics 3 (3) (2021)
Sepehr Golriz Khatami, Sarah Mubeen, Vinay Srinivas Bharadhwaj, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures. NPJ systems biology and applications 7 (1) (2021)
Daniel Domingo-Fernández, Shounak Baksi, Bruce Schultz, Yojana Gadiya, Reagon Karki, Tamara Raschka, Christian Ebeling, Martin Hofmann-Apitius, Alpha Tom Kodamullil
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology. Bioinformatics (Oxford, England) 37 (9) (2021)
Rebeca Queiroz Figueiredo, Tamara Raschka, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Sarah Mubeen, Daniel Domingo-Fernández
Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms. Nucleic acids research 49 (14) (2021)
Meemansa Sood, Akrishta Sahay, Reagon Karki, Mohammad Asif Emon, Henri Vrooman, Martin Hofmann-Apitius, Holger Fröhlich
Realistic simulation of virtual multi-scale, multi-modal patient trajectories using Bayesian networks and sparse auto-encoders. Scientific reports 10 (1) (2020)
Emanuel Schwarz, Dag Alnaes, Ole A Andreassen, Han Cao, Junfang Chen, Franziska Degenhardt, Daria Doncevic, Dominic Dwyer, Roland Eils, Jeanette Erdmann, Carl Herrmann, Martin Hofmann-Apitius, Tobias Kaufmann, Nikolaos Koutsouleris, Alpha T Kodamullil, Adyasha Khuntia, Sören Mucha, Markus M Nöthen, Riya Paul, Mads L Pedersen, Andres Quintero, Heribert Schunkert, Ashwini Kumar Sharma, Heike Tost, Lars Tjelta Westlye, Youcheng Zhang, Andreas Meyer-Lindenberg
Identifying multimodal signatures underlying the somatic comorbidity of psychosis: the COMMITMENT roadmap. Molecular psychiatry 26 (3) (2020)
Tamás Letoha, Anett Hudák, Erzsébet Kusz, Aladár Pettkó-Szandtner, Ildikó Domonkos, Katalin Jósvay, Martin Hofmann-Apitius, László Szilák
Contribution of syndecans to cellular internalization and fibrillation of amyloid-β(1-42). Scientific reports 9 (1) (2019)
Daniel Domingo-Fernández, Charles Tapley Hoyt, Carlos Bobis-Álvarez, Josep Marín-Llaó, Martin Hofmann-Apitius
Erratum: Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. NPJ systems biology and applications 5 (2019)
Reagon Karki, Alpha Tom Kodamullil, Charles Tapley Hoyt, Martin Hofmann-Apitius
Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm. BMC bioinformatics 20 (1) (2019)
Anett Hudák, Erzsébet Kusz, Ildikó Domonkos, Katalin Jósvay, Alpha Tom Kodamullil, László Szilák, Martin Hofmann-Apitius, Tamás Letoha
Contribution of syndecans to cellular uptake and fibrillation of α-synuclein and tau. Scientific reports 9 (1) (2019)
Shashank Khanna, Daniel Domingo-Fernández, Anandhi Iyappan, Mohammad Asif Emon, Martin Hofmann-Apitius, Holger Fröhlich
Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer's Disease and Reconstruction of Relevant Biological Mechanisms. Scientific reports 8 (1) (2018)
Daniel Domingo-Fernández, Charles Tapley Hoyt, Carlos Bobis-Álvarez, Josep Marín-Llaó, Martin Hofmann-Apitius
ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. NPJ systems biology and applications 5 (2018)