David J Miller

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Topics

Dna Methylation

Toxoplasma Gondii

Top Venues

Molecular ecology

Molecular biology and evolution

Regional environmental change

The ISME journal

This page only lists publications with an associated author ORCID identifier.

Publications

Jia Zhang, Nadja M Schneller, Matt A Field, Cheong Xin Chan, David J Miller, Jan M Strugnell, Cynthia Riginos, Line Bay, Ira R Cooke
Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular ecology (2024)
Jia Zhang, Nadja M Schneller, Matt A Field, Cheong Xin Chan, David J Miller, Jan M Strugnell, Cynthia Riginos, Line Bay, Ira R Cooke
Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular ecology 33 (16) (2024)
Graeme S Cumming, Maja Adamska, Michele L Barnes, Jon Barnett, David R Bellwood, Joshua E Cinner, Philippa J Cohen, Jennifer M Donelson, Katharina Fabricius, R Quentin Grafton, Alana Grech, Georgina G Gurney, Ove Hoegh-Guldberg, Andrew S Hoey, Mia O Hoogenboom, Jacqueline D Lau, Catherine E Lovelock, Ryan Joseph Lowe, David J Miller, Tiffany H Morrison, Peter J Mumby, Martin Nakata, John M Pandolfi, Garry D Peterson, Morgan S Pratchett, Timothy Ravasi, Cynthia Riginos, Jodie L Rummer, Britta Schaffelke, Thomas Wernberg, Shaun K Wilson
Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional environmental change 23 (2) (2023)
Graeme S Cumming, Maja Adamska, Michele L Barnes, Jon Barnett, David R Bellwood, Joshua E Cinner, Philippa J Cohen, Jennifer M Donelson, Katharina Fabricius, R Quentin Grafton, Alana Grech, Georgina G Gurney, Ove Hoegh-Guldberg, Andrew S Hoey, Mia O Hoogenboom, Jacqueline D Lau, Catherine E Lovelock, Ryan Joseph Lowe, David J Miller, Tiffany H Morrison, Peter J Mumby, Martin Nakata, John M Pandolfi, Garry D Peterson, Morgan S Pratchett, Timothy Ravasi, Cynthia Riginos, Jodie L Rummer, Britta Schaffelke, Thomas Wernberg, Shaun K Wilson
Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional environmental change 23 (2) (2023)
Yaeli Rosenberg, Noa Simon-Blecher, Maya Lalzar, Ruth Yam, Aldo Shemesh, Shahar Alon, Gabriela Perna, Anny Cárdenas, Christian R Voolstra, David J Miller, Oren Levy
Urbanization comprehensively impairs biological rhythms in coral holobionts. Global change biology 28 (10) (2022)
Hua Ying, David C Hayward, Alexander Klimovich, Thomas C G Bosch, Laura Baldassarre, Teresa Neeman, Sylvain Forêt, Gavin Huttley, Adam M Reitzel, Sebastian Fraune, Eldon E Ball, David J Miller
The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates. Molecular biology and evolution 39 (2) (2022)
Jia Zhang, Zoe T Richards, Arne A S Adam, Cheong Xin Chan, Chuya Shinzato, James Gilmour, Luke Thomas, Jan M Strugnell, David J Miller, Ira R Cooke
Evolutionary responses of a reef-building coral to climate change at the end of the last glacial maximum. Molecular biology and evolution (2022)
Legana C H W Fingerhut, David J Miller, Jan M Strugnell, Norelle L Daly, Ira R Cooke
ampir: an R package for fast genome-wide prediction of antimicrobial peptides. Bioinformatics (Oxford, England) 36 (21) (2021)
Paul A O'Brien, Nikos Andreakis, Shangjin Tan, David J Miller, Nicole Suzanne Webster, Guojie Zhang, David G Bourne
Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts. Molecular ecology 30 (15) (2021)
Amin R Mohamed, Cheong Xin Chan, Mark A Ragan, Jia Zhang, Ira Cooke, Eldon E Ball, David J Miller
Comparative transcriptomic analyses of Chromera and Symbiodiniaceae. Environmental microbiology reports 12 (4) (2020)
Amin R Mohamed, Natalia Andrade, Aurelie Moya, Cheong Xin Chan, Andrew P Negri, David G Bourne, Hua Ying, Eldon E Ball, David J Miller
Dual RNA-sequencing analyses of a coral and its native symbiont during the establishment of symbiosis. Molecular ecology 29 (20) (2020)
Ira R Cooke, Hua Ying, Sylvain Forêt, Pim Bongaerts, Jan M Strugnell, Oleg Simakov, Jia Zhang, Matthew A Field, Mauricio Rodriguez-Lanetty, Sara C Bell, David G Bourne, Madeleine J H van Oppen, Mark A Ragan, David J Miller
Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. Science advances 6 (48) (2020)
Paul A O'Brien, Shangjin Tan, Chentao Yang, Pedro R Frade, Nikos Andreakis, Hillary A Smith, David J Miller, Nicole Suzanne Webster, Guojie Zhang, David G Bourne
Diverse coral reef invertebrates exhibit patterns of phylosymbiosis. The ISME journal 14 (9) (2020)
Steven J Robbins, Caitlin M Singleton, Cheong Xin Chan, Lauren F Messer, Aileen Ute Geers, Hua Ying, Alexander Baker, Sara C Bell, Kathleen M Morrow, Mark A Ragan, David J Miller, Sylvain Forêt, null null, Christian R Voolstra, Gene W Tyson, David G Bourne
A genomic view of the reef-building coral Porites lutea and its microbial symbionts. Nature microbiology 4 (12) (2019)
Mei-Fang Lin, Shunichi Takahashi, Sylvain Forêt, Simon K Davy, David J Miller
Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species. Biology open 8 (3) (2019)
Amin R Mohamed, Vivian R Cumbo, Saki Harii, Chuya Shinzato, Cheong Xin Chan, Mark A Ragan, Noriyuki Satoh, Eldon E Ball, David J Miller
Deciphering the nature of the coral-Chromera association. The ISME journal 12 (3) (2018)
Hua Ying, Ira Cooke, Susanne Sprungala, Weiwen Wang, David C Hayward, Yurong Tang, Gavin Huttley, Eldon E Ball, Sylvain Forêt, David J Miller
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages. Genome biology 19 (1) (2018)
Andrea M Quattrini, Brant C Faircloth, Luisa F Dueñas, Tom C L Bridge, Mercer R Brugler, Iván F Calixto-Botía, Danielle M DeLeo, Sylvain Forêt, Santiago Herrera, Simon M Y Lee, David J Miller, Carlos Prada, Gandhi Rádis-Baptista, Catalina Ramírez-Portilla, Juan A Sánchez, Estefanía Rodríguez, Catherine S McFadden
Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems. Molecular ecology resources 18 (2) (2017)