Cheong Xin Chan

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 27

Top Venues

The University of Queensland (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

The University of Queensland

Australia

PHD

Publications

Katherine E Dougan, Anthony J Bellantuono, Tim Kahlke, Raffaela M Abbriano, Yibi Chen, Sarah Shah, Camila Granados-Cifuentes, Madeleine J H van Oppen, Debashish Bhattacharya, David J Sugget, Mauricio Rodriguez-Lanetty, Cheong Xin Chan
Whole-genome duplication in an algal symbiont bolsters coral heat tolerance. Science advances 10 (29) (2024)
Jia Zhang, Nadja M Schneller, Matt A Field, Cheong Xin Chan, David J Miller, Jan M Strugnell, Cynthia Riginos, Line Bay, Ira R Cooke
Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular ecology (2024)
Jia Zhang, Nadja M Schneller, Matt A Field, Cheong Xin Chan, David J Miller, Jan M Strugnell, Cynthia Riginos, Line Bay, Ira R Cooke
Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular ecology 33 (16) (2024)
Katherine E Dougan, Anthony J Bellantuono, Tim Kahlke, Raffaela M Abbriano, Yibi Chen, Sarah Shah, Camila Granados-Cifuentes, Madeleine J H van Oppen, Debashish Bhattacharya, David J Sugget, Mauricio Rodriguez-Lanetty, Cheong Xin Chan
Whole-genome duplication in an algal symbiont bolsters coral heat tolerance. Science advances 10 (29) (2024)
Yibi Chen, Katherine E Dougan, Quan H Nguyen, Debashish Bhattacharya, Cheong Xin Chan
Genome-wide transcriptome analysis reveals the diversity and function of long non-coding RNAs in dinoflagellates. NAR genomics and bioinformatics 6 (1) (2024)
Mahasweta Saha, Simon M Dittami, Cheong Xin Chan, Jean-Baptiste Raina, Willem Stock, Fatemeh Ghaderiardakani, Ann Mary Valathuparambil Baby John, Shauna Corr, Guy Schleyer, Jonathan D Todd, Ulisse Cardini, Mia Maria Bengtsson, Soizic Prado, Derek Skillings, Eva Christina Sonnenschein, Aschwin H Engelen, Gaoge Wang, Thomas Wichard, Juliet Brodie, Catherine Leblanc, Suhelen Egan
Progress and future directions for seaweed holobiont research. The New phytologist (2024)
Sarah Shah, Katherine E Dougan, Yibi Chen, Debashish Bhattacharya, Cheong Xin Chan
Gene duplication is the primary driver of intraspecific genomic divergence in coral algal symbionts. Open biology 13 (9) (2023)
Allison M Williams, Elizabeth A Jolley, Michel Geovanni Santiago-Martínez, Cheong Xin Chan, Robin Gutell, James G Ferry, Philip C Bevilacqua
In vivo structure probing of RNA in Archaea: Novel insights into the ribosome structure of Methanosarcina acetivorans . RNA (New York, N.Y.) (2023)
Katherine E Dougan, Zhi-Luo Deng, Lars Wöhlbrand, Carsten Reuse, Boyke Bunk, Yibi Chen, Juliane Hartlich, Karsten Hiller, Uwe John, Jana Kalvelage, Johannes Mansky, Meina Neumann-Schaal, Joerg Overmann, Jörn Petersen, Selene Sanchez-Garcia, Kerstin Schmidt-Hohagen, Sarah Shah, Cathrin Spröer, Helena Sztajer, Hui Wang, Debashish Bhattacharya, Ralf Rabus, Dieter Jahn, Cheong Xin Chan, Irene Wagner-Doebler
Multi-omics analysis reveals the molecular response to heat stress in a "red tide" dinoflagellate. Genome biology 24 (1) (2023)
Hisatake Ishida, Uwe John, Shauna A Murray, Debashish Bhattacharya, Cheong Xin Chan
Developing model systems for dinoflagellates in the post-genomic era. Journal of phycology (2023)
Sonja I Repetti, Cintia Iha, Kavitha Uthanumallian, Christopher J Jackson, Yibi Chen, Cheong Xin Chan, Heroen Verbruggen
Nuclear genome of a pedinophyte pinpoints genomic innovation and streamlining in the green algae. The New phytologist 233 (5) (2022)
Yibi Chen, Sarah Shah, Katherine E Dougan, Madeleine J H van Oppen, Debashish Bhattacharya, Cheong Xin Chan
Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes. Microorganisms 10 (8) (2022)
Jia Zhang, Zoe T Richards, Arne A S Adam, Cheong Xin Chan, Chuya Shinzato, James Gilmour, Luke Thomas, Jan M Strugnell, David J Miller, Ira R Cooke
Evolutionary responses of a reef-building coral to climate change at the end of the last glacial maximum. Molecular biology and evolution (2022)
Jan Y Xue, Katharine R Hind, Matthew A Lemay, Andrea Mcminigal, Emma Jourdain, Cheong Xin Chan, Patrick T Martone
Transcriptome of the coralline alga Calliarthron tuberculosum (Corallinales, Rhodophyta) reveals convergent evolution of a partial lignin biosynthesis pathway. PloS one 17 (7) (2022)
Raúl A González-Pech, Timothy G Stephens, Yibi Chen, Amin R Mohamed, Yuanyuan Cheng, Sarah Shah, Katherine E Dougan, Michael D A Fortuin, Rémi Lagorce, David W Burt, Debashish Bhattacharya, Mark A Ragan, Cheong Xin Chan
Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium. BMC biology 19 (1) (2021)
Amin R Mohamed, Natalia Andrade, Aurelie Moya, Cheong Xin Chan, Andrew P Negri, David G Bourne, Hua Ying, Eldon E Ball, David J Miller
Dual RNA-sequencing analyses of a coral and its native symbiont during the establishment of symbiosis. Molecular ecology 29 (20) (2020)
Yibi Chen, Raúl A González-Pech, Timothy G Stephens, Debashish Bhattacharya, Cheong Xin Chan
Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes. Journal of phycology 56 (1) (2020)
Timothy G Stephens, Raúl A González-Pech, Yuanyuan Cheng, Amin R Mohamed, David W Burt, Debashish Bhattacharya, Mark A Ragan, Cheong Xin Chan
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions. BMC biology 18 (1) (2020)
Steven J Robbins, Caitlin M Singleton, Cheong Xin Chan, Lauren F Messer, Aileen Ute Geers, Hua Ying, Alexander Baker, Sara C Bell, Kathleen M Morrow, Mark A Ragan, David J Miller, Sylvain Forêt, null null, Christian R Voolstra, Gene W Tyson, David G Bourne
A genomic view of the reef-building coral Porites lutea and its microbial symbionts. Nature microbiology 4 (12) (2019)
Amin R Mohamed, Vivian R Cumbo, Saki Harii, Chuya Shinzato, Cheong Xin Chan, Mark A Ragan, Noriyuki Satoh, Eldon E Ball, David J Miller
Deciphering the nature of the coral-Chromera association. The ISME journal 12 (3) (2018)
Christopher Jackson, Andrew H Knoll, Cheong Xin Chan, Heroen Verbruggen
Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids. Scientific reports 8 (1) (2018)
Huanle Liu, Timothy G Stephens, Raúl A González-Pech, Victor H Beltran, Bruno Lapeyre, Pim Bongaerts, Ira Cooke, Manuel Aranda, David G Bourne, Sylvain Forêt, David J Miller, Madeleine J H van Oppen, Christian R Voolstra, Mark A Ragan, Cheong Xin Chan
Erratum: Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications biology 1 (2018)
Timothy G Stephens, Mark A Ragan, Debashish Bhattacharya, Cheong Xin Chan
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions. Scientific reports 8 (1) (2018)
Guillaume Bernard, Paul Greenfield, Mark A Ragan, Cheong Xin Chan
k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank. mSystems 3 (6) (2018)
Raúl A González-Pech, Mark A Ragan, Cheong Xin Chan
Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium. Scientific reports 7 (1) (2017)
Guillaume Bernard, Mark A Ragan, Cheong Xin Chan
Recapitulating phylogenies using k-mers: from trees to networks. F1000Research (2016)
Guillaume Bernard, Mark A Ragan, Cheong Xin Chan
Recapitulating phylogenies using k-mers: from trees to networks. F1000Research 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Cheong Xin Chan