David Kenneth Gifford (David Gifford, David K Gifford)

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 11

Top Topics

Dna Damage Response

High Throughput Sequencing

Top Venues

PLoS computational biology

Genome research

Nature communications

BMC bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Zheng Dai, Sachit D Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert, David Kenneth Gifford
Ultra-high-diversity factorizable libraries for efficient therapeutic discovery. Genome research (2022)
Konstantin Krismer, Jennifer Hammelman, David Kenneth Gifford
seqgra: principled selection of neural network architectures for genomics prediction tasks. Bioinformatics (Oxford, England) 38 (9) (2022)
Jennifer Hammelman, Tulsi Patel, Michael Closser, Hynek Wichterle, David Kenneth Gifford
Ranking reprogramming factors for cell differentiation. Nature methods 19 (7) (2022)
Jennifer Hammelman, Konstantin Krismer, David Kenneth Gifford
spatzie: an R package for identifying significant transcription factor motif co-enrichment from enhancer-promoter interactions. Nucleic acids research 50 (9) (2022)
Heysol C Bermudez-Cabrera, Sannie Culbertson, Sammy Barkal, Benjamin Holmes, Max W Shen, Sophia Zhang, David Kenneth Gifford, Richard I Sherwood
Small molecule inhibition of ATM kinase increases CRISPR-Cas9 1-bp insertion frequency. Nature communications 12 (1) (2021)
Grace Hui Ting Yeo, Oscar Juez, Qing Chen, Budhaditya Banerjee, Lendy Chu, Max W Shen, May Sabry, Ive Logister, Richard I Sherwood, David Kenneth Gifford
Detection of gene cis-regulatory element perturbations in single-cell transcriptomes. PLoS computational biology 17 (3) (2021)
Wilson Louie, Max W Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A Cassa, Richard I Sherwood, David Kenneth Gifford
Machine learning based CRISPR gRNA design for therapeutic exon skipping. PLoS computational biology 17 (1) (2021)
Jennifer Hammelman, David Kenneth Gifford
Discovering differential genome sequence activity with interpretable and efficient deep learning. PLoS computational biology 17 (8) (2021)
Grace Hui Ting Yeo, Sachit D Saksena, David Kenneth Gifford
Generative modeling of single-cell time series with PRESCIENT enables prediction of cell trajectories with interventions. Nature communications 12 (1) (2021)
Ge Liu, Haoyang Zeng, David Kenneth Gifford
Visualizing complex feature interactions and feature sharing in genomic deep neural networks. BMC bioinformatics 20 (1) (2019)
Yuchun Guo, Kevin Tian, Haoyang Zeng, Xiaoyun Guo, David Kenneth Gifford
A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction. Genome research 28 (6) (2018)