Richard I Sherwood (Richard Sherwood)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 21

Top Topics

Low Density Lipoprotein

Transcription Factor

Dna Damage Response

Top Venues

Nature genetics

Nature communications

bioRxiv : the preprint server for biology

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown, Michael I Love, Vineel Bhat, Guillaume Lettre, David Benjamin Ascher, Christopher A Cassa, Richard I Sherwood, Luca Pinello
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics (2024)
Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown, Michael I Love, Vineel Bhat, Guillaume Lettre, David Benjamin Ascher, Christopher A Cassa, Richard I Sherwood, Luca Pinello
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown, Michael I Love, Vineel Bhat, Guillaume Lettre, David Benjamin Ascher, Christopher A Cassa, Richard I Sherwood, Luca Pinello
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown, Michael I Love, Vineel Bhat, Guillaume Lettre, David Benjamin Ascher, Christopher A Cassa, Richard I Sherwood, Luca Pinello
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics 56 (5) (2024)
Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown, Michael I Love, Vineel Bhat, Guillaume Lettre, David Benjamin Ascher, Christopher A Cassa, Richard I Sherwood, Luca Pinello
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics 56 (5) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown, Michael I Love, Vineel Bhat, Guillaume Lettre, David Benjamin Ascher, Christopher A Cassa, Richard I Sherwood, Luca Pinello
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics 56 (5) (2024)
Marisa C Hamilton, James D Fife, Ersin Akinci, Tian Yu, Benyapa Khowpinitchai, Minsun Cha, Sammy Barkal, Thi Tun Thi, Grace H T Yeo, Juan Pablo Ramos Barroso, Matthew Jake Francoeur, Minja Velimirovic, David K Gifford, Guillaume Lettre, Haojie Yu, Christopher A Cassa, Richard I Sherwood
Systematic elucidation of genetic mechanisms underlying cholesterol uptake. bioRxiv : the preprint server for biology (2023)
Vedagopuram Sreekanth, Max Jan, Kevin Tianmeng Zhao, Donghyun Lim, Jessie R Davis, Marie McConkey, Veronica Kovalcik, Sam Barkal, Benjamin K Law, James D Fife, Ruilin Tian, Michael E Vinyard, Basheer Becerra, Martin Edward Kampmann, Richard I Sherwood, Luca Pinello, David R Liu, Benjamin L Ebert, Amit Choudhary
A molecular glue approach to control the half-life of CRISPR-based technologies. bioRxiv : the preprint server for biology (2023)
Marisa C Hamilton, James D Fife, Ersin Akinci, Tian Yu, Benyapa Khowpinitchai, Minsun Cha, Sammy Barkal, Thi Tun Thi, Grace H T Yeo, Juan Pablo Ramos Barroso, Matthew Jake Francoeur, Minja Velimirovic, David K Gifford, Guillaume Lettre, Haojie Yu, Christopher A Cassa, Richard I Sherwood
Systematic elucidation of genetic mechanisms underlying cholesterol uptake. bioRxiv : the preprint server for biology (2023)
Marisa C Hamilton, James D Fife, Ersin Akinci, Tian Yu, Benyapa Khowpinitchai, Minsun Cha, Sammy Barkal, Thi Tun Thi, Grace H T Yeo, Juan Pablo Ramos Barroso, Matthew Jake Francoeur, Minja Velimirovic, David K Gifford, Guillaume Lettre, Haojie Yu, Christopher A Cassa, Richard I Sherwood
Systematic elucidation of genetic mechanisms underlying cholesterol uptake. bioRxiv : the preprint server for biology (2023)
Marisa C Hamilton, James D Fife, Ersin Akinci, Tian Yu, Benyapa Khowpinitchai, Minsun Cha, Sammy Barkal, Thi Tun Thi, Grace H T Yeo, Juan Pablo Ramos Barroso, Matthew Jake Francoeur, Minja Velimirovic, David K Gifford, Guillaume Lettre, Haojie Yu, Christopher A Cassa, Richard I Sherwood
Systematic elucidation of genetic mechanisms underlying cholesterol uptake. bioRxiv : the preprint server for biology (2023)
Marisa C Hamilton, James D Fife, Ersin Akinci, Tian Yu, Benyapa Khowpinitchai, Minsun Cha, Sammy Barkal, Thi Tun Thi, Grace H T Yeo, Juan Pablo Ramos Barroso, Matthew Jake Francoeur, Minja Velimirovic, David K Gifford, Guillaume Lettre, Haojie Yu, Christopher A Cassa, Richard I Sherwood
Systematic elucidation of genetic mechanisms underlying cholesterol uptake. bioRxiv : the preprint server for biology (2023)
Minja Velimirovic, Larissa C Zanetti, Max W Shen, James D Fife, Lin Lin, Minsun Cha, Ersin Akinci, Danielle Barnum, Tian Yu, Richard I Sherwood
Peptide fusion improves prime editing efficiency. Nature communications 13 (1) (2022)
Heysol C Bermudez-Cabrera, Sannie Culbertson, Sammy Barkal, Benjamin Holmes, Max W Shen, Sophia Zhang, David Kenneth Gifford, Richard I Sherwood
Small molecule inhibition of ATM kinase increases CRISPR-Cas9 1-bp insertion frequency. Nature communications 12 (1) (2021)
Grace Hui Ting Yeo, Oscar Juez, Qing Chen, Budhaditya Banerjee, Lendy Chu, Max W Shen, May Sabry, Ive Logister, Richard I Sherwood, David Kenneth Gifford
Detection of gene cis-regulatory element perturbations in single-cell transcriptomes. PLoS computational biology 17 (3) (2021)
Wilson Louie, Max W Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A Cassa, Richard I Sherwood, David Kenneth Gifford
Machine learning based CRISPR gRNA design for therapeutic exon skipping. PLoS computational biology 17 (1) (2021)
Tomasz Szczesnik, Joshua W K Ho, Richard I Sherwood
Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding. Epigenetics & chromatin 12 (1) (2019)