Dmitry Kobak

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 23

Top Topics

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Significance (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Jan Lause, Dmitry Kobak, Philipp Berens
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Philipp Berens, Dmitry Kobak
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Dmitry Kobak, Philipp Berens
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Dmitry Kobak, Philipp Berens
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Sebastian Damrich, Manuel V Klockow, Philipp Berens, Fred A Hamprecht, Dmitry Kobak
Visualizing single-cell data with the neighbor embedding spectrum. bioRxiv : the preprint server for biology (2024)
Jan Lause, Philipp Berens, Dmitry Kobak
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Philipp Berens, Dmitry Kobak
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Christoph Ziegenhain, Leonard Hartmanis, Philipp Berens, Dmitry Kobak
Compound models and Pearson residuals for normalization of single-cell RNA-seq data without UMIs. bioRxiv : the preprint server for biology (2023)
Luke Bashford, Dmitry Kobak, Joern Diedrichsen, Carsten Mehring
Motor skill learning decreases movement variability and increases planning horizon. Journal of neurophysiology 127 (4) (2022)
Shan Shen, Xiaolong Jiang, Federico Scala, Jiakun Fu, Paul G Fahey, Dmitry Kobak, Zhenghuan Tan, Na Zhou, Jacob Reimer, Fabian Sinz, Andreas Savas Tolias
Distinct organization of two cortico-cortical feedback pathways. Nature communications 13 (1) (2022)
Dmitry Kobak
Underdispersion: A statistical anomaly in reported Covid data. Significance (Oxford, England) 19 (2) (2022)
Dmitry Kobak
Excess mortality reveals Covid's true toll in Russia. Significance (Oxford, England) 18 (1) (2021)
Marcela Lipovsek, Cedric Bardy, Cathryn Rene Cadwell, Kristen Hadley, Dmitry Kobak, Shreejoy J Tripathy
Patch-seq: Past, Present, and Future. The Journal of neuroscience : the official journal of the Society for Neuroscience 41 (5) (2021)
Jan Lause, Philipp Berens, Dmitry Kobak
Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data. Genome biology 22 (1) (2021)
Ariel Karlinsky, Dmitry Kobak
Tracking excess mortality across countries during the COVID-19 pandemic with the World Mortality Dataset. eLife 10 (2021)
Dmitry Kobak, George C Linderman
Initialization is critical for preserving global data structure in both t-SNE and UMAP. Nature biotechnology 39 (2) (2021)
Federico Scala, Dmitry Kobak, Matteo Bernabucci, Yves Bernaerts, Cathryn Rene Cadwell, Jesus Ramon Castro, Leonard Hartmanis, Xiaolong Jiang, Sophie Laturnus, Elanine Miranda, Shalaka Mulherkar, Zheng Huan Tan, Zizhen Yao, Hongkui Zeng, Rickard Sandberg, Philipp Berens, Andreas Savas Tolias
Phenotypic variation of transcriptomic cell types in mouse motor cortex. Nature 598 (7879) (2020)
Cathryn Rene Cadwell, Federico Scala, Paul G Fahey, Dmitry Kobak, Shalaka Mulherkar, Fabian H Sinz, Stelios Papadopoulos, Zheng H Tan, Per Johnsson, Leonard Hartmanis, Shuang Li, Ronald J Cotton, Kimberley F Tolias, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex. eLife 9 (2020)
Federico Scala, Dmitry Kobak, Shan Shen, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan, Stelios Papadopoulos, Saumil Surendra Patel, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nature communications 10 (1) (2019)
Federico Scala, Dmitry Kobak, Shan Shen, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan, Stelios Papadopoulos, Saumil Surendra Patel, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nature communications 10 (1) (2019)
Dmitry Kobak, José Luís Pardo-Vázquez, Mafalda Valente, Christian K Machens, Alfonso Renart
State-dependent geometry of population activity in rat auditory cortex. eLife 8 (2019)
Dmitry Kobak, Philipp Berens
The art of using t-SNE for single-cell transcriptomics. Nature communications 10 (1) (2019)
Dmitry Kobak, Wieland Brendel, Christos Constantinidis, Claudia E Feierstein, Adam Kepecs, Zachary F Mainen, Xue-Lian Qi, Ranulfo Romo, Naoshige Uchida, Christian K Machens
Demixed principal component analysis of neural population data. eLife 5 (2016)