Philipp Berens

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 42

Top Venues

bioRxiv : the preprint server for biology

Scientific reports

eLife

Nature communications

Eberhard Karls Universität Tübingen

Eberhard Karls Universität Tübingen (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Eberhard Karls Universität Tübingen Jun 01 2016

Germany

Group Leader (tenured) :: Institute for Ophthalmic Research

Baylor College of Medicine

United States

International Collaborator :: Neuroscience

Eberhard Karls Universität Tübingen

Germany

Postdoc :: Bernstein Center for Computational Neuroscience

Max-Planck-Institut für biologische Kybernetik

Germany

PhD student :: Computational Vision and Neuroscience

Education History

Eberhard Karls Universität Tübingen

Germany

PHD :: International Max Planck Research School for Neural and Behavioral Sciences

Publications

Murat Seçkin Ayhan, Jonas Neubauer, Mehmet Murat Uzel, Faik Gelisken, Philipp Berens
Interpretable detection of epiretinal membrane from optical coherence tomography with deep neural networks. Scientific reports 14 (1) (2024)
Jan Lause, Dmitry Kobak, Philipp Berens
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Philipp Berens, Dmitry Kobak
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Jan Lause, Dmitry Kobak, Philipp Berens
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Murat Seçkin Ayhan, Jonas Neubauer, Mehmet Murat Uzel, Faik Gelisken, Philipp Berens
Interpretable detection of epiretinal membrane from optical coherence tomography with deep neural networks. Scientific reports 14 (1) (2024)
Katrin Franke, Chenchen Cai, Kayla Ponder, Jiakun Fu, Sacha Sokoloski, Philipp Berens, Andreas Savas Tolias
Asymmetric distribution of color-opponent response types across mouse visual cortex supports superior color vision in the sky. eLife 12 (2024)
Jan Lause, Dmitry Kobak, Philipp Berens
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Sebastian Damrich, Manuel V Klockow, Philipp Berens, Fred A Hamprecht, Dmitry Kobak
Visualizing single-cell data with the neighbor embedding spectrum. bioRxiv : the preprint server for biology (2024)
Jan Lause, Philipp Berens, Dmitry Kobak
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Murat Seçkin Ayhan, Jonas Neubauer, Mehmet Murat Uzel, Faik Gelisken, Philipp Berens
Interpretable detection of epiretinal membrane from optical coherence tomography with deep neural networks. Scientific reports 14 (1) (2024)
Murat Seçkin Ayhan, Jonas Neubauer, Mehmet Murat Uzel, Faik Gelisken, Philipp Berens
Interpretable detection of epiretinal membrane from optical coherence tomography with deep neural networks. Scientific reports 14 (1) (2024)
Katrin Franke, Chenchen Cai, Kayla Ponder, Jiakun Fu, Sacha Sokoloski, Philipp Berens, Andreas Savas Tolias
Asymmetric distribution of color-opponent response types across mouse visual cortex supports superior color vision in the sky. eLife 12 (2024)
Lisa M Koch, Christian F Baumgartner, Philipp Berens
Distribution shift detection for the postmarket surveillance of medical AI algorithms: a retrospective simulation study. NPJ digital medicine 7 (1) (2024)
Murat Seçkin Ayhan, Jonas Neubauer, Mehmet Murat Uzel, Faik Gelisken, Philipp Berens
Interpretable detection of epiretinal membrane from optical coherence tomography with deep neural networks. Scientific reports 14 (1) (2024)
Jan Lause, Philipp Berens, Dmitry Kobak
The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense. bioRxiv : the preprint server for biology (2024)
Lisa M Koch, Christian F Baumgartner, Philipp Berens
Distribution shift detection for the postmarket surveillance of medical AI algorithms: a retrospective simulation study. NPJ digital medicine 7 (1) (2024)
Lisa M Koch, Christian F Baumgartner, Philipp Berens
Distribution shift detection for the postmarket surveillance of medical AI algorithms: a retrospective simulation study. NPJ digital medicine 7 (1) (2024)
Katrin Franke, Chenchen Cai, Kayla Ponder, Jiakun Fu, Sacha Sokoloski, Philipp Berens, Andreas Savas Tolias
Asymmetric distribution of color-opponent response types across mouse visual cortex supports superior color vision in the sky. bioRxiv : the preprint server for biology (2023)
Jan Lause, Christoph Ziegenhain, Leonard Hartmanis, Philipp Berens, Dmitry Kobak
Compound models and Pearson residuals for normalization of single-cell RNA-seq data without UMIs. bioRxiv : the preprint server for biology (2023)
Jonathan Oesterle, Nicholas Krämer, Philipp Hennig, Philipp Berens
Probabilistic solvers enable a straight-forward exploration of numerical uncertainty in neuroscience models. Journal of computational neuroscience 50 (4) (2022)
Sarah Strauss, Maria M Korympidou, Yanli Ran, Katrin Franke, Timm Schubert, Tom Baden, Philipp Berens, Thomas Euler, Anna L Vlasits
Center-surround interactions underlie bipolar cell motion sensitivity in the mouse retina. Nature communications 13 (1) (2022)
Cornelius Schröder, Jonathan Oesterle, Philipp Berens, Takeshi Yoshimatsu, Tom Baden
Distinct synaptic transfer functions in same-type photoreceptors. eLife 10 (2021)
Takeshi Yoshimatsu, Philipp Bartel, Cornelius Schröder, Filip K Janiak, François St-Pierre, Philipp Berens, Tom Baden
Ancestral circuits for vertebrate color vision emerge at the first retinal synapse. Science advances 7 (42) (2021)
Federico Scala, Dmitry Kobak, Matteo Bernabucci, Yves Bernaerts, Cathryn Rene Cadwell, Jesus Ramon Castro, Leonard Hartmanis, Xiaolong Jiang, Sophie Laturnus, Elanine Miranda, Shalaka Mulherkar, Zheng Huan Tan, Zizhen Yao, Hongkui Zeng, Rickard Sandberg, Philipp Berens, Andreas Savas Tolias
Phenotypic variation of transcriptomic cell types in mouse motor cortex. Nature 598 (7879) (2020)
Cathryn Rene Cadwell, Federico Scala, Paul G Fahey, Dmitry Kobak, Shalaka Mulherkar, Fabian H Sinz, Stelios Papadopoulos, Zheng H Tan, Per Johnsson, Leonard Hartmanis, Shuang Li, Ronald J Cotton, Kimberley F Tolias, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex. eLife 9 (2020)
Jonathan Oesterle, Christian Behrens, Cornelius Schröder, Thoralf Hermann, Thomas Euler, Katrin Franke, Robert G Smith, Guenther Zeck, Philipp Berens
Bayesian inference for biophysical neuron models enables stimulus optimization for retinal neuroprosthetics. eLife 9 (2020)
Klaudia P Szatko, Maria M Korympidou, Yanli Ran, Philipp Berens, Deniz Dalkara, Timm Schubert, Thomas Euler, Katrin Franke
Neural circuits in the mouse retina support color vision in the upper visual field. Nature communications 11 (1) (2020)
Zhijian Zhao, David A Klindt, André Maia Chagas, Klaudia P Szatko, Luke Rogerson, Dario A Protti, Christian Behrens, Deniz Dalkara, Timm Schubert, Matthias Bethge, Katrin Franke, Philipp Berens, Alexander S Ecker, Thomas Euler
The temporal structure of the inner retina at a single glance. Scientific reports 10 (1) (2020)
Larissa Höfling, Jonathan Oesterle, Philipp Berens, Guenther Zeck
Probing and predicting ganglion cell responses to smooth electrical stimulation in healthy and blind mouse retina. Scientific reports 10 (1) (2020)
Yanli Ran, Ziwei Huang, Tom Baden, Timm Schubert, Harald Baayen, Philipp Berens, Katrin Franke, Thomas Euler
Type-specific dendritic integration in mouse retinal ganglion cells. Nature communications 11 (1) (2020)
Federico Scala, Dmitry Kobak, Shan Shen, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan, Stelios Papadopoulos, Saumil Surendra Patel, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nature communications 10 (1) (2019)
Federico Scala, Dmitry Kobak, Shan Shen, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan, Stelios Papadopoulos, Saumil Surendra Patel, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nature communications 10 (1) (2019)
Luke E Rogerson, Zhijian Zhao, Katrin Franke, Thomas Euler, Philipp Berens
Bayesian hypothesis testing and experimental design for two-photon imaging data. PLoS computational biology 15 (8) (2019)
Tom Baden, Thomas Euler, Philipp Berens
Understanding the retinal basis of vision across species. Nature reviews. Neuroscience 21 (1) (2019)
Dmitry Kobak, Philipp Berens
The art of using t-SNE for single-cell transcriptomics. Nature communications 10 (1) (2019)
Marie E Bellet, Joachim Bellet, Hendrikje Nienborg, Ziad M Hafed, Philipp Berens
Human-level saccade detection performance using deep neural networks. Journal of neurophysiology 121 (2) (2018)
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick J Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D Harris, Ben Bolte, Timothy A Machado, Dario Ringach, Jasmine Stone, Luke E Rogerson, Nicolas J Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas Savas Tolias, Matthias Bethge
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS computational biology 14 (5) (2018)
Marcel Nonnenmacher, Christian Behrens, Philipp Berens, Matthias Bethge, Jakob H Macke
Signatures of criticality arise from random subsampling in simple population models. PLoS computational biology 13 (10) (2017)
Luke Edward Rogerson, Christian Behrens, Thomas Euler, Philipp Berens, Timm Schubert
Connectomics of synaptic microcircuits: lessons from the outer retina. The Journal of physiology 595 (16) (2017)
Christian Leibig, Vaneeda Allken, Murat Seçkin Ayhan, Philipp Berens, Siegfried Wahl
Leveraging uncertainty information from deep neural networks for disease detection. Scientific reports 7 (1) (2017)
Maria Diamantaki, Markus Frey, Philipp Berens, Patricia Preston-Ferrer, Andrea Burgalossi
Sparse activity of identified dentate granule cells during spatial exploration. eLife 5 (2016)
Christian Behrens, Timm Schubert, Silke Haverkamp, Thomas Euler, Philipp Berens
Connectivity map of bipolar cells and photoreceptors in the mouse retina. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

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Philipp Berens