Christoph Ziegenhain

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 22

Top Venues

Nature immunology

Nature biotechnology

Nature communications

Nature cell biology

Ludwig-Maximilians-Universität München

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Ludwig-Maximilians-Universität München

Germany

PhD student

Publications

Joana Carrelha, Stefania Mazzi, Axel Winroth, Michael Hagemann-Jensen, Christoph Ziegenhain, Kari Högstrand, Masafumi Seki, Margs S Brennan, Madeleine Lehander, Bishan Wu, Yiran Meng, Ellen Markljung, Ruggiero Norfo, Hisashi Ishida, Karin Belander Strålin, Francesca Grasso, Christina Simoglou Karali, Affaf Aliouat, Amy Hillen, Edwin Chari, Kimberly Siletti, Supat Thongjuea, Adam J Mead, Sten Linnarsson, Claus Nerlov, Rickard Sandberg, Tetsuichi Yoshizato, Petter S Woll, Sten Eirik W Jacobsen
Alternative platelet differentiation pathways initiated by nonhierarchically related hematopoietic stem cells. Nature immunology (2024)
Daniel Ramsköld, Gert-Jan Hendriks, Anton J M Larsson, Juliane V Mayr, Christoph Ziegenhain, Michael Hagemann-Jensen, Leonard Hartmanis, Rickard Sandberg
Single-cell new RNA sequencing reveals principles of transcription at the resolution of individual bursts. Nature cell biology (2024)
Joana Carrelha, Stefania Mazzi, Axel Winroth, Michael Hagemann-Jensen, Christoph Ziegenhain, Kari Högstrand, Masafumi Seki, Margs S Brennan, Madeleine Lehander, Bishan Wu, Yiran Meng, Ellen Markljung, Ruggiero Norfo, Hisashi Ishida, Karin Belander Strålin, Francesca Grasso, Christina Simoglou Karali, Affaf Aliouat, Amy Hillen, Edwin Chari, Kimberly Siletti, Supat Thongjuea, Adam J Mead, Sten Linnarsson, Claus Nerlov, Rickard Sandberg, Tetsuichi Yoshizato, Petter S Woll, Sten Eirik W Jacobsen
Alternative platelet differentiation pathways initiated by nonhierarchically related hematopoietic stem cells. Nature immunology 25 (6) (2024)
Joana Carrelha, Stefania Mazzi, Axel Winroth, Michael Hagemann-Jensen, Christoph Ziegenhain, Kari Högstrand, Masafumi Seki, Margs S Brennan, Madeleine Lehander, Bishan Wu, Yiran Meng, Ellen Markljung, Ruggiero Norfo, Hisashi Ishida, Karin Belander Strålin, Francesca Grasso, Christina Simoglou Karali, Affaf Aliouat, Amy Hillen, Edwin Chari, Kimberly Siletti, Supat Thongjuea, Adam J Mead, Sten Linnarsson, Claus Nerlov, Rickard Sandberg, Tetsuichi Yoshizato, Petter S Woll, Sten Eirik W Jacobsen
Alternative platelet differentiation pathways initiated by nonhierarchically related hematopoietic stem cells. Nature immunology 25 (6) (2024)
Joana Carrelha, Stefania Mazzi, Axel Winroth, Michael Hagemann-Jensen, Christoph Ziegenhain, Kari Högstrand, Masafumi Seki, Margs S Brennan, Madeleine Lehander, Bishan Wu, Yiran Meng, Ellen Markljung, Ruggiero Norfo, Hisashi Ishida, Karin Belander Strålin, Francesca Grasso, Christina Simoglou Karali, Affaf Aliouat, Amy Hillen, Edwin Chari, Kimberly Siletti, Supat Thongjuea, Adam J Mead, Sten Linnarsson, Claus Nerlov, Rickard Sandberg, Tetsuichi Yoshizato, Petter S Woll, Sten Eirik W Jacobsen
Alternative platelet differentiation pathways initiated by nonhierarchically related hematopoietic stem cells. Nature immunology 25 (6) (2024)
Joana Carrelha, Stefania Mazzi, Axel Winroth, Michael Hagemann-Jensen, Christoph Ziegenhain, Kari Högstrand, Masafumi Seki, Margs S Brennan, Madeleine Lehander, Bishan Wu, Yiran Meng, Ellen Markljung, Ruggiero Norfo, Hisashi Ishida, Karin Belander Strålin, Francesca Grasso, Christina Simoglou Karali, Affaf Aliouat, Amy Hillen, Edwin Chari, Kimberly Siletti, Supat Thongjuea, Adam J Mead, Sten Linnarsson, Claus Nerlov, Rickard Sandberg, Tetsuichi Yoshizato, Petter S Woll, Sten Eirik W Jacobsen
Alternative platelet differentiation pathways initiated by nonhierarchically related hematopoietic stem cells. Nature immunology 25 (6) (2024)
Joana Carrelha, Stefania Mazzi, Axel Winroth, Michael Hagemann-Jensen, Christoph Ziegenhain, Kari Högstrand, Masafumi Seki, Margs S Brennan, Madeleine Lehander, Bishan Wu, Yiran Meng, Ellen Markljung, Ruggiero Norfo, Hisashi Ishida, Karin Belander Strålin, Francesca Grasso, Christina Simoglou Karali, Affaf Aliouat, Amy Hillen, Edwin Chari, Kimberly Siletti, Supat Thongjuea, Adam J Mead, Sten Linnarsson, Claus Nerlov, Rickard Sandberg, Tetsuichi Yoshizato, Petter S Woll, Sten Eirik W Jacobsen
Alternative platelet differentiation pathways initiated by nonhierarchically related hematopoietic stem cells. Nature immunology 25 (6) (2024)
Pedro Luis Moura, Teresa Mortera Blanco, Isabel Juliana Hofman, Gabriele Todisco, Warren W Kretzschmar, Ann-Charlotte Björklund, Maria Creignou, Michael Hagemann-Jensen, Christoph Ziegenhain, David Cabrerizo Granados, Indira Barbosa, Gunilla Walldin, Monika Jansson, Neil Ashley, Adam J Mead, Vanessa Lundin, Marios Dimitriou, Tetsuichi Yoshizato, Petter S Woll, Seishi Ogawa, Rickard Sandberg, Sten Eirik W Jacobsen, Eva Hellström Lindberg
Erythroid differentiation enhances RNA mis-splicing in SF3B1-mutant myelodysplastic syndromes with ring sideroblasts. Cancer research (2023)
Jan Lause, Christoph Ziegenhain, Leonard Hartmanis, Philipp Berens, Dmitry Kobak
Compound models and Pearson residuals for normalization of single-cell RNA-seq data without UMIs. bioRxiv : the preprint server for biology (2023)
Chrysa Nikopoulou, Niklas Kleinenkuhnen, Swati Parekh, Tonantzi Sandoval, Christoph Ziegenhain, Farina Schneider, Patrick Giavalisco, Kat-Folz Donahue, Anna Juliane Vesting, Marcel Kirchner, Mihaela Bozukova, Christian Vossen, Janine Altmüller, Frank Thomas Wunderlich, Rickard Sandberg, Vangelis Kondylis, Achim Tresch, Peter Tessarz
Spatial and single-cell profiling of the metabolome, transcriptome and epigenome of the aging mouse liver. Nature aging (2023)
Michael Mentz, William Keay, Carolin Dorothea Strobl, Martina Antoniolli, Louisa Adolph, Michael Heide, Axel Lechner, Sarah Haebe, Elisa V Osterode, Robert Kridel, Christoph Ziegenhain, Lucas Esteban Wange, Johannes Adrian Hildebrand, Tanaya Shree, Elisabeth Silkenstedt, Annette M Staiger, German Ott, Heike Horn, Monika Szczepanowski, Julia Richter, Ronald Levy, Andreas Rosenwald, Wolfgang Enard, Ursula Zimber-Strobl, Michael von Bergwelt-Baildon, Wolfgang Hiddemann, Wolfram Klapper, Marc Schmidt-Supprian, Martina Rudelius, Deepak Bararia, Verena Passerini, Oliver Weigert
PARP14 is a novel target in STAT6 mutant follicular lymphoma. Leukemia 36 (9) (2022)
Michael Hagemann-Jensen, Christoph Ziegenhain, Rickard Sandberg
Scalable single-cell RNA sequencing from full transcripts with Smart-seq3xpress. Nature biotechnology 40 (10) (2022)
Konstantin Lutz, Andrea Musumeci, Christopher Sie, Ezgi Dursun, Elena Winheim, Johannes Bagnoli, Christoph Ziegenhain, Lisa Rausch, Volker Bergen, Malte Daniel Luecken, Robert A J Oostendorp, Barbara U Schraml, Fabian Joachim Theis, Wolfgang Enard, Thomas Korn, Anne B Krug
Ly6D + Siglec-H + precursors contribute to conventional dendritic cells via a Zbtb46 + Ly6D + intermediary stage. Nature communications 13 (1) (2022)
Christoph Ziegenhain, Gert-Jan Hendriks, Michael Hagemann-Jensen, Rickard Sandberg
Molecular spikes: a gold standard for single-cell RNA counting. Nature methods 19 (5) (2022)
Per Johnsson, Christoph Ziegenhain, Leonard Hartmanis, Gert-Jan Hendriks, Michael Hagemann-Jensen, Björn Reinius, Rickard Sandberg
Transcriptional kinetics and molecular functions of long noncoding RNAs. Nature genetics 54 (3) (2022)
Anika Böttcher, Maren Büttner, Sophie Tritschler, Michael Sterr, Alexandra Aliluev, Lena Oppenländer, Ingo Burtscher, Steffen Sass, Martin Irmler, Johannes Beckers, Christoph Ziegenhain, Wolfgang Enard, Andrea C Schamberger, Fien M Verhamme, Oliver Eickelberg, Fabian Joachim Theis, Heiko Lickert
Non-canonical Wnt/PCP signalling regulates intestinal stem cell lineage priming towards enteroendocrine and Paneth cell fates. Nature cell biology 23 (1) (2021)
Anton J M Larsson, Christoph Ziegenhain, Michael Hagemann-Jensen, Björn Reinius, Tina Jacob, Tim Dalessandri, Gert-Jan Hendriks, Maria Kasper, Rickard Sandberg
Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance. PLoS computational biology 17 (3) (2021)
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, Daniel Ramsköld, Gert-Jan Hendriks, Anton J M Larsson, Omid R Faridani, Rickard Sandberg
Single-cell RNA counting at allele and isoform resolution using Smart-seq3. Nature biotechnology 38 (6) (2020)
Elisabetta Mereu, Atefeh Lafzi, Catia Moutinho, Christoph Ziegenhain, Davis J McCarthy, Adrián Álvarez-Varela, Eduard Batlle, null Sagar, Dominic Grün, Julia K Lau, Stéphane C Boutet, Chad Sanada, Aik Ooi, Robert C Jones, Kelly Kaihara, Chris Brampton, Yasha Talaga, Yohei Sasagawa, Kaori Tanaka, Tetsutaro Hayashi, Caroline Braeuning, Cornelius Fischer, Sascha Sauer, Timo Trefzer, Christian Conrad, Xian Adiconis, Lan T Nguyen, Aviv Regev, Joshua Z Levin, Swati Parekh, Aleksandar Janjic, Lucas Esteban Wange, Johannes W Bagnoli, Wolfgang Enard, Marta Gut, Rickard Sandberg, Itoshi Nikaido, Ivo Glynne Gut, Oliver Stegle, Holger Heyn
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects. Nature biotechnology 38 (6) (2020)
Florian A Gegenfurtner, Berenice Jahn, Helga Wagner, Christoph Ziegenhain, Wolfgang Enard, Ludwig Geistlinger, Joachim O Rädler, Angelika M Vollmar, Stefan Zahler
Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing. Journal of cell science 131 (10) (2018)
Johannes W Bagnoli, Christoph Ziegenhain, Aleksandar Janjic, Lucas E Wange, Beate Vieth, Swati Parekh, Johanna Geuder, Ines Hellmann, Wolfgang Enard
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq. Nature communications 9 (1) (2018)
Christina Schreck, Rouzanna Istvánffy, Christoph Ziegenhain, Theresa Sippenauer, Franziska Ruf, Lynette Henkel, Florian Gaertner, Beate Vieth, Maria Carolina Florian, Nicole Mende, Anna Taubenberger, Áine Prendergast, Alina Wagner, Charlotta Pagel, Sandra Grziwok, Katharina S Götze, Jochen Guck, Douglas C Dean, Steffen Massberg, Marieke Essers, Claudia Waskow, Hartmut Geiger, Mathias Schiemann, Christian Peschel, Wolfgang Enard, Robert A J Oostendorp
Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells. The Journal of experimental medicine 214 (1) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Christoph Ziegenhain