Dmitry Korkin

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 21

Top Topics

Coronavirus Disease

Machine Learning

High Throughput

Top Venues

Nature neuroscience

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Dmitry Korkin, Aukkawut Ammartayakun, Palawat Busaranuvong, Roya Khosravi-Far
Graph Convolutional Network for predicting secondary structure of RNA. Research square (2024)
Palawat Busaranuvong, Aukkawut Ammartayakun, Dmitry Korkin, Roya Khosravi-Far
Graph Convolutional Network for predicting secondary structure of RNA. Research square (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Maksim Kitsak, Alexander A Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A Eisenberg, David L Alderson, Dmitry Korkin, Igor Linkov
Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping. Nature communications 14 (1) (2023)
Maksim Kitsak, Alexander A Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A Eisenberg, David L Alderson, Dmitry Korkin, Igor Linkov
Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping. Nature communications 14 (1) (2023)
Vignesh Narayan Hariharan, Min-Wook Shin, Ching-Wen Chang, Daniel O'Reilly, Annabelle Biscans, Ken Yamada, Zhiru Guo, Mohan Somasundaran, Qi Tang, Kathryn Monopoli, Pranathi Meda Krishnamurthy, Gitali Devi, Nicholas McHugh, David A Cooper, Dimas Echeverria, John Cruz, Io Long Chan, Ping Liu, Sun-Young Lim, Jill McConnell, Satya Prakash Singh, Samuel Hildebrand, Jacquelyn Sousa, Sarah M Davis, Zachary Kennedy, Chantal Ferguson, Bruno M D C Godinho, Yann Thillier, Jillian Caiazzi, Socheata Ly, Manish Muhuri, Karen Kelly, Fiachra Humphries, Alyssa Cousineau, Krishna Mohan Parsi, Qi Li, Yang Wang, René Maehr, Guangping Gao, Dmitry Korkin, William M McDougall, Robert W Finberg, Katherine A Fitzgerald, Jennifer P Wang, Jonathan K Watts, Anastasia Khvorova
Divalent siRNAs are bioavailable in the lung and efficiently block SARS-CoV-2 infection. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Vignesh Narayan Hariharan, Min-Wook Shin, Ching-Wen Chang, Daniel O'Reilly, Annabelle Biscans, Ken Yamada, Zhiru Guo, Mohan Somasundaran, Qi Tang, Kathryn Monopoli, Pranathi Meda Krishnamurthy, Gitali Devi, Nicholas McHugh, David A Cooper, Dimas Echeverria, John Cruz, Io Long Chan, Ping Liu, Sun-Young Lim, Jill McConnell, Satya Prakash Singh, Samuel Hildebrand, Jacquelyn Sousa, Sarah M Davis, Zachary Kennedy, Chantal Ferguson, Bruno M D C Godinho, Yann Thillier, Jillian Caiazzi, Socheata Ly, Manish Muhuri, Karen Kelly, Fiachra Humphries, Alyssa Cousineau, Krishna Mohan Parsi, Qi Li, Yang Wang, René Maehr, Guangping Gao, Dmitry Korkin, William M McDougall, Robert W Finberg, Katherine A Fitzgerald, Jennifer P Wang, Jonathan K Watts, Anastasia Khvorova
Divalent siRNAs are bioavailable in the lung and efficiently block SARS-CoV-2 infection. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Maksim Kitsak, Alexander A Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A Eisenberg, David L Alderson, Dmitry Korkin, Igor Linkov
Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping. Nature communications 14 (1) (2023)
Maksim Kitsak, Alexander A Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A Eisenberg, David L Alderson, Dmitry Korkin, Igor Linkov
Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping. Nature communications 14 (1) (2023)
Vignesh Narayan Hariharan, Min-Wook Shin, Ching-Wen Chang, Daniel O'Reilly, Annabelle Biscans, Ken Yamada, Zhiru Guo, Mohan Somasundaran, Qi Tang, Kathryn Monopoli, Pranathi Meda Krishnamurthy, Gitali Devi, Nicholas McHugh, David A Cooper, Dimas Echeverria, John Cruz, Io Long Chan, Ping Liu, Sun-Young Lim, Jill McConnell, Satya Prakash Singh, Samuel Hildebrand, Jacquelyn Sousa, Sarah M Davis, Zachary Kennedy, Chantal Ferguson, Bruno M D C Godinho, Yann Thillier, Jillian Caiazzi, Socheata Ly, Manish Muhuri, Karen Kelly, Fiachra Humphries, Alyssa Cousineau, Krishna Mohan Parsi, Qi Li, Yang Wang, René Maehr, Guangping Gao, Dmitry Korkin, William M McDougall, Robert W Finberg, Katherine A Fitzgerald, Jennifer P Wang, Jonathan K Watts, Anastasia Khvorova
Divalent siRNAs are bioavailable in the lung and efficiently block SARS-CoV-2 infection. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Oleksandr Narykov, Suhas Srinivasan, Dmitry Korkin
Computational protein modeling and the next viral pandemic. Nature methods 18 (5) (2021)
Suhas Srinivasan, Anastasia Leshchyk, Nathan T Johnson, Dmitry Korkin
A hybrid deep clustering approach for robust cell type profiling using single-cell RNA-seq data. RNA (New York, N.Y.) 26 (10) (2020)
Jianying Wang, Andi Dhroso, Xunliang Liu, Thomas J Baum, Richard S Hussey, Eric L Davis, Xiaohong Wang, Dmitry Korkin, Melissa Goellner Mitchum
Phytonematode peptide effectors exploit a host post-translational trafficking mechanism to the ER using a novel translocation signal. The New phytologist 229 (1) (2020)
Nathan T Johnson, Andi Dhroso, Katelyn J Hughes, Dmitry Korkin
Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers? RNA (New York, N.Y.) 24 (9) (2018)
Vitaly Gruzdev, Dmitry Korkin, Brian P Mooney, Jesper F Havelund, Ian Max Møller, Jay J Thelen
Controlled modification of biomolecules by ultrashort laser pulses in polar liquids. Scientific reports 7 (1) (2017)