Hagen U Tilgner (Hagen Tilgner)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 24

Top Topics

Subarachnoid Hemorrhage

Top Venues

Nature neuroscience

Bioinformatics (Oxford, England)

bioRxiv : the preprint server for biology

Molecular psychiatry

This page only lists publications with an associated author ORCID identifier.

Publications

Dmitry Meleshko, Andrey D Prjbelski, Mikhail Raiko, Alexandru I Tomescu, Hagen U Tilgner, Iman Hajirasouliha
cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data. Bioinformatics (Oxford, England) 40 (2) (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Wen Hu, Careen Foord, Justine Hsu, Li Fan, Michael J Corley, Tarun N Bhatia, Siwei Xu, Natan Belchikov, Yi He, Alina Ps Pang, Samantha N Lanjewar, Julien Jarroux, Anoushka Joglekar, Teresa A Milner, Lishomwa C Ndhlovu, Jing Zhang, Eduardo Butelman, Steven A Sloan, Virginia My Lee, Li Gan, Hagen U Tilgner
ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer's Disease. bioRxiv : the preprint server for biology (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph Paul Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant S Emani, Dana Gabuzda, Kyle J Gaulton, Michelle G Giglio, Federico M Giorgi, Busra Gok, Chittibabu Guda, Eran Hadas, Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam, Michelle M Jacobs, Jennifer Kelschenbach, Dong-Wook Kim, Cheyu Lee, Shuhui Liu, Xiaokun Liu, Bertha K Madras, Anup A Mahurkar, Deborah C Mash, Eran A Mukamel, Meng Niu, Richard M O'Connor, Chelsea M Pagan, Alina P S Pang, Piya Pillai, Vez Repunte-Canonigo, W Brad Ruzicka, Jay Stanley, Timothy L Tickle, Shang-Yi A Tsai, Allen Wang, Lauren Wills, Alyssa M Wilson, Susan N Wright, Siwei Xu, Junchen Yang, Maryam Zand, Le Zhang, Jing Zhang, Schahram Akbarian, Shilpa Buch, Christine S Cheng, Michael J Corley, Howard S Fox, Mark B Gerstein, Suryaram Gummuluru, Myriam Heiman, Ya-Chi Ho, Manolis Kellis, Paul J Kenny, Yuval Kluger, Teresa A Milner, David J Moore, Susan Morgello, Lishomwa C Ndhlovu, Tariq M Rana, Pietro Paolo Sanna, John S Satterlee, Nenad Sestan, Stephen A Spector, Serena Spudich, Hagen U Tilgner, David J Volsky, Owen R White, Dionna W Williams, Hongkui Zeng
The single-cell opioid responses in the context of HIV (SCORCH) consortium. Molecular psychiatry (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience (2024)
Dmitry Meleshko, Andrey D Prjbelski, Mikhail Raiko, Alexandru I Tomescu, Hagen U Tilgner, Iman Hajirasouliha
cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data. Bioinformatics (Oxford, England) 40 (2) (2024)
Dmitry Meleshko, Andrey D Prjbelski, Mikhail Raiko, Alexandru I Tomescu, Hagen U Tilgner, Iman Hajirasouliha
cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data. Bioinformatics (Oxford, England) 40 (2) (2024)
Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph Paul Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant S Emani, Dana Gabuzda, Kyle J Gaulton, Michelle G Giglio, Federico M Giorgi, Busra Gok, Chittibabu Guda, Eran Hadas, Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam, Michelle M Jacobs, Jennifer Kelschenbach, Dong-Wook Kim, Cheyu Lee, Shuhui Liu, Xiaokun Liu, Bertha K Madras, Anup A Mahurkar, Deborah C Mash, Eran A Mukamel, Meng Niu, Richard M O'Connor, Chelsea M Pagan, Alina P S Pang, Piya Pillai, Vez Repunte-Canonigo, W Brad Ruzicka, Jay Stanley, Timothy L Tickle, Shang-Yi A Tsai, Allen Wang, Lauren Wills, Alyssa M Wilson, Susan N Wright, Siwei Xu, Junchen Yang, Maryam Zand, Le Zhang, Jing Zhang, Schahram Akbarian, Shilpa Buch, Christine S Cheng, Michael J Corley, Howard S Fox, Mark B Gerstein, Suryaram Gummuluru, Myriam Heiman, Ya-Chi Ho, Manolis Kellis, Paul J Kenny, Yuval Kluger, Teresa A Milner, David J Moore, Susan Morgello, Lishomwa C Ndhlovu, Tariq M Rana, Pietro Paolo Sanna, John S Satterlee, Nenad Sestan, Stephen A Spector, Serena Spudich, Hagen U Tilgner, David J Volsky, Owen R White, Dionna W Williams, Hongkui Zeng
The single-cell opioid responses in the context of HIV (SCORCH) consortium. Molecular psychiatry (2024)
Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph Paul Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant S Emani, Dana Gabuzda, Kyle J Gaulton, Michelle G Giglio, Federico M Giorgi, Busra Gok, Chittibabu Guda, Eran Hadas, Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam, Michelle M Jacobs, Jennifer Kelschenbach, Dong-Wook Kim, Cheyu Lee, Shuhui Liu, Xiaokun Liu, Bertha K Madras, Anup A Mahurkar, Deborah C Mash, Eran A Mukamel, Meng Niu, Richard M O'Connor, Chelsea M Pagan, Alina P S Pang, Piya Pillai, Vez Repunte-Canonigo, W Brad Ruzicka, Jay Stanley, Timothy L Tickle, Shang-Yi A Tsai, Allen Wang, Lauren Wills, Alyssa M Wilson, Susan N Wright, Siwei Xu, Junchen Yang, Maryam Zand, Le Zhang, Jing Zhang, Schahram Akbarian, Shilpa Buch, Christine S Cheng, Michael J Corley, Howard S Fox, Mark B Gerstein, Suryaram Gummuluru, Myriam Heiman, Ya-Chi Ho, Manolis Kellis, Paul J Kenny, Yuval Kluger, Teresa A Milner, David J Moore, Susan Morgello, Lishomwa C Ndhlovu, Tariq M Rana, Pietro Paolo Sanna, John S Satterlee, Nenad Sestan, Stephen A Spector, Serena Spudich, Hagen U Tilgner, David J Volsky, Owen R White, Dionna W Williams, Hongkui Zeng
The single-cell opioid responses in the context of HIV (SCORCH) consortium. Molecular psychiatry (2024)
Dmitry Meleshko, Andrey D Prjbelski, Mikhail Raiko, Alexandru I Tomescu, Hagen U Tilgner, Iman Hajirasouliha
cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data. Bioinformatics (Oxford, England) 40 (2) (2024)
Wen Hu, Careen Foord, Justine Hsu, Li Fan, Michael J Corley, Tarun N Bhatia, Siwei Xu, Natan Belchikov, Yi He, Alina Ps Pang, Samantha N Lanjewar, Julien Jarroux, Anoushka Joglekar, Teresa A Milner, Lishomwa C Ndhlovu, Jing Zhang, Eduardo Butelman, Steven A Sloan, Virginia My Lee, Li Gan, Hagen U Tilgner
ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer's Disease. bioRxiv : the preprint server for biology (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark E Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria M Sheynkman, Dmitry Korkin, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain. Nature neuroscience 27 (6) (2024)
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark Diekhans, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria Sheynkman, Dmitry Korkin, M Elizabeth Ross, Hagen U Tilgner
Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development. bioRxiv : the preprint server for biology (2023)
Andrey D Prjibelski, Alla Mikheenko, Anoushka Joglekar, Alexander Smetanin, Julien Jarroux, Alla L Lapidus, Hagen U Tilgner
Accurate isoform discovery with IsoQuant using long reads. Nature biotechnology (2023)
Careen Foord, Justine Hsu, Julien Jarroux, Wen Hu, Natan Belchikov, Shaun Pollard, Yi He, Anoushka Joglekar, Hagen U Tilgner
The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing. Nature methods 20 (1) (2023)
Careen Foord, Justine Hsu, Julien Jarroux, Wen Hu, Natan Belchikov, Shaun Pollard, Yi He, Anoushka Joglekar, Hagen U Tilgner
The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing. Nature methods 20 (1) (2023)
Alexander N Stein, Anoushka Joglekar, Chi-Lam Poon, Hagen U Tilgner
ScisorWiz: visualizing differential isoform expression in single-cell long-read data. Bioinformatics (Oxford, England) 38 (13) (2022)
Simon A Hardwick, Wen Hu, Anoushka Joglekar, Li Fan, Paul G Collier, Careen Foord, Jennifer Balacco, Samantha N Lanjewar, Maureen McGuirk Sampson, Frank Koopmans, Andrey D Prjibelski, Alla Mikheenko, Natan Belchikov, Julien Jarroux, Anne Bergstrom Lucas, Miklos Palkovits, Wenjie Luo, Teresa A Milner, Lishomwa C Ndhlovu, August B Smit, John Q Trojanowski, Virginia M Y Lee, Olivier Fedrigo, Steven A Sloan, Dóra Tombácz, Margaret Elizabeth Ross, Erich D Jarvis, Zsolt Boldogkői, Li Gan, Hagen U Tilgner
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue. Nature biotechnology 40 (7) (2022)
Anoushka Joglekar, Andrey Prjibelski, Ahmed Mahfouz, Paul Collier, Susan Lin, Anna Katharina Schlusche, Jordan Marrocco, Stephen R Williams, Bettina Haase, Ashley Hayes, Jennifer G Chew, Neil I Weisenfeld, Man Ying Wong, Alexander N Stein, Simon A Hardwick, Toby Hunt, Qi Wang, Christoph Dieterich, Zachary Bent, Olivier Fedrigo, Steven A Sloan, Davide Risso, Erich D Jarvis, Paul Flicek, Wenjie Luo, Geoffrey S Pitt, Adam Frankish, August B Smit, Margaret Elizabeth Ross, Hagen U Tilgner
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain. Nature communications 12 (1) (2021)
Iman Hajirasouliha, Hagen U Tilgner
The tech for the next decade: promises and challenges in genome biology. Genome biology 20 (1) (2019)