Esen Sefik

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 13

Top Topics

Top Venues

Nature biotechnology

Research square

Science immunology

This page only lists publications with an associated author ORCID identifier.

Publications

Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Alejandro Marin-Lopez, John D Huck, Allen T Esterly, Veronica Azcutia, Connor E Rosen, Rolando García Milian, Esen Sefik, Gemma Vidal-Pedrola, Hamidah Raduwan, Tse-Yu Chen, Gunjan Arora, Stephanie Halene, Albert C Shaw, Noah W Palm, Richard A Flavell, Charles A Parkos, Saravanan Thangamani, Aaron M Ring, Erol Fikrig
The human CD47 checkpoint is targeted by an immunosuppressive Aedes aegypti salivary factor to enhance arboviral skin infectivity. Science immunology 9 (98) (2024)
Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Rihao Qu, Xiuyuan Cheng, Esen Sefik, Jay S Stanley Iii, Boris Landa, Francesco Strino, Sarah Platt, James Garritano, Ian D Odell, Ronald Coifman, Richard A Flavell, Peggy Myung, Yuval Kluger
Gene trajectory inference for single-cell data by optimal transport metrics. Nature biotechnology (2024)
Chenbo Ding, Zhibin Yu, Esen Sefik, Jing Zhou, Eleanna Kaffe, Gaoyang Wang, Bin Li, Richard A Flavell, Weiguo Hu, Youqiong Ye, Hua-Bing Li
A T reg -specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver. Nature aging (2023)
Esen Sefik, Rihao Qu, Caroline Junqueira, Eleanna Kaffe, Haris Mirza, Jun Zhao, J Richard Brewer, Ailin Han, Holly R Steach, Benjamin Israelow, Holly N Blackburn, Sofia E Velazquez, Y Grace Chen, Stephanie Halene, Akiko Iwasak, Eric Meffre, Michel C Nussenzweig, Judy Lieberman, Craig B Wilen, Yuval Kluger, Richard A Flavell
Inflammasome activation in infected macrophages drives COVID-19 pathology. Nature 606 (7914) (2022)
Esen Sefik, Benjamin Israelow, Haris Mirza, Jun Zhao, Rihao Qu, Eleanna Kaffe, Eric Song, Stephanie Halene, Eric Meffre, Yuval Kluger, Michel C Nussenzweig, Craig B Wilen, Akiko Iwasak, Richard A Flavell
A humanized mouse model of chronic COVID-19. Nature biotechnology 40 (6) (2021)
Esen Sefik, Ben Israelow, Jun Zhao, Rihao Qu, Eric Song, Haris Mirza, Eleanna Kaffe, Stephanie Halene, Eric Meffre, Yuval Kluger, Michel C Nussenzweig, Craig B Wilen, Akiko Iwasak, Richard A Flavell
A humanized mouse model of chronic COVID-19 to evaluate disease mechanisms and treatment options. Research square (2021)
Esen Sefik, Rihao Qu, Eleanna Kaffe, Jun Zhao, Caroline Junqueira, Haris Mirza, Ricky Brewer, Ailin Han, Holly R Steach, Benjamin Israelow, Y Grace Chen, Stephanie Halene, Akiko Iwasak, Eric Meffre, Michel Nussenzweig, Judy Lieberman, Craig B Wilen, Yuval Kluger, Richard A Flavell
Viral replication in human macrophages enhances an inflammatory cascade and interferon driven chronic COVID-19 in humanized mice. bioRxiv : the preprint server for biology (2021)