Stephanie Halene

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 29

Top Topics

Top Venues

Nature biotechnology

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Tinatin Muradashvili, Yuxin Liu, Jennifer VanOudenhove, Sean X Gu, Diane S Krause, Francesca Montanari, Maximillian J Carlino, Rubia Mancuso, Jessica M Stempel, Stephanie Halene, Amer M Zeidan, Nikolai A Podoltsev, Natalia Neparidze
Aplastic anemia in association with multiple myeloma: clinical and pathophysiological insights. Leukemia & lymphoma (2024)
Emma Busarello, Giulia Biancon, Fabio Lauria, Zuhairia Ibnat, Christian Ramirez, Gabriele Tomè, Kristin R Aass, Jennifer VanOudenhove, Therese Standal, Gabriella Viero, Stephanie Halene, Toma Tebaldi
Interpreting single-cell messages in normal and aberrant hematopoiesis with the Cell Marker Accordion. bioRxiv : the preprint server for biology (2024)
Emma Busarello, Giulia Biancon, Fabio Lauria, Zuhairia Ibnat, Christian Ramirez, Gabriele Tomè, Kristin R Aass, Jennifer VanOudenhove, Therese Standal, Gabriella Viero, Stephanie Halene, Toma Tebaldi
Interpreting single-cell messages in normal and aberrant hematopoiesis with the Cell Marker Accordion. bioRxiv : the preprint server for biology (2024)
Alejandro Marin-Lopez, John D Huck, Allen T Esterly, Veronica Azcutia, Connor E Rosen, Rolando García Milian, Esen Sefik, Gemma Vidal-Pedrola, Hamidah Raduwan, Tse-Yu Chen, Gunjan Arora, Stephanie Halene, Albert C Shaw, Noah W Palm, Richard A Flavell, Charles A Parkos, Saravanan Thangamani, Aaron M Ring, Erol Fikrig
The human CD47 checkpoint is targeted by an immunosuppressive Aedes aegypti salivary factor to enhance arboviral skin infectivity. Science immunology 9 (98) (2024)
Yang Liu, Marcello DiStasio, Graham Su, Hiromitsu Asashima, Archibald Enninful, Xiaoyu Qin, Yanxiang Deng, Jungmin Nam, Fu Gao, Pino Bordignon, Marco Cassano, Mary Tomayko, Mina L Xu, Stephanie Halene, Joseph E Craft, David A Hafler, Rong Fan
High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq. Nature biotechnology (2023)
Yang Liu, Marcello DiStasio, Graham Su, Hiromitsu Asashima, Archibald Enninful, Xiaoyu Qin, Yanxiang Deng, Jungmin Nam, Fu Gao, Pino Bordignon, Marco Cassano, Mary Tomayko, Mina L Xu, Stephanie Halene, Joseph E Craft, David A Hafler, Rong Fan
High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq. Nature biotechnology (2023)
Yang Liu, Marcello DiStasio, Graham Su, Hiromitsu Asashima, Archibald Enninful, Xiaoyu Qin, Yanxiang Deng, Jungmin Nam, Fu Gao, Pino Bordignon, Marco Cassano, Mary Tomayko, Mina L Xu, Stephanie Halene, Joseph E Craft, David A Hafler, Rong Fan
High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq. Nature biotechnology (2023)
Jennifer VanOudenhove, Yuxin Liu, Raman Nelakanti, Dongjoo Kim, Emma Busarello, Natalia Tijaro Ovalle, Zhihong Qi, Padmavathi Mamillapalli, Alexa Siddon, Zhiliang Bai, Alfredo Axtmayer, Cheryl Corso, Shalin Kothari, Francine Foss, Iris Isufi, Toma Tebaldi, Lohith Gowda, Rong Fan, Stuart Seropian, Stephanie Halene
Impact of Memory T Cells on SARS-COV-2 Vaccine Response in Hematopoietic Stem Cell Transplant. bioRxiv : the preprint server for biology (2023)
Yang Liu, Marcello DiStasio, Graham Su, Hiromitsu Asashima, Archibald Enninful, Xiaoyu Qin, Yanxiang Deng, Jungmin Nam, Fu Gao, Pino Bordignon, Marco Cassano, Mary Tomayko, Mina L Xu, Stephanie Halene, Joseph E Craft, David A Hafler, Rong Fan
High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq. Nature biotechnology (2023)
Kimberly N Griffin, Benjamin William Walters, Haixin Li, Huafeng Wang, Giulia Biancon, Toma Tebaldi, Carolyn B Kaya, Jean Kanyo, TuKiet T Lam, Andy L Cox, Stephanie Halene, Jean-Ju Chung, Bluma J Lesch
Widespread association of the Argonaute protein AGO2 with meiotic chromatin suggests a distinct nuclear function in mammalian male reproduction. Genome research (2022)
Vera Adema, Feiyang Ma, Rashmi Kanagal-Shamana, Natthakan Thongon, Guillermo Montalban Bravo, Hui Yang, Scott A Peslak, Feng Wang, Pamela Acha, Francisco Solé, Pamela Lockyer, Margherita Cassari, Jaroslaw P Maciejewski, Valeria Visconte, Irene Gañán-Gómez, Yuan-Bin Song, Carlos E Bueso-Ramos, Matteo Pellegrini, Tuyet M Tan, Rafael Bejar, Jennifer S Carew, Stephanie Halene, Valeria Santini, Gheath Al-Atrash, Karen Clise-Dwyer, Guillermo Garcia Manero, Gerd A Blobel, Simona Colla
Targeting the EIF2AK1 Signaling Pathway Rescues Red Blood Cell Production in SF3B1-Mutant Myelodysplastic Syndromes With Ringed Sideroblasts. Blood cancer discovery 3 (6) (2022)
Rong Fan, Yang Liu, Marcello DiStasio, Graham Su, Hiromitsu Asashima, Archibald Enninful, Xiaoyu Qin, Yanxiang Deng, Pino Bordignon, Marco Cassano, Mary Tomayko, Mina Xu, Stephanie Halene, Joseph E Craft, David A Hafler
Spatial-CITE-seq: spatially resolved high-plex protein and whole transcriptome co-mapping. Research square (2022)
Rana Gbyli, Yuan-Bin Song, Wei Liu, Yimeng Gao, Giulia Biancon, Namrata S Chandhok, Xiaman Wang, Xiaoying Fu, Amisha Patel, Ranjini Sundaram, Toma Tebaldi, Padmavathi Mamillapalli, Amer M Zeidan, Richard A Flavell, Thomas Prebet, Ranjit S Bindra, Stephanie Halene
In vivo anti-tumor effect of PARP inhibition in IDH1/2 mutant MDS/AML resistant to targeted inhibitors of mutant IDH1/2. Leukemia 36 (5) (2022)
Esen Sefik, Rihao Qu, Caroline Junqueira, Eleanna Kaffe, Haris Mirza, Jun Zhao, J Richard Brewer, Ailin Han, Holly R Steach, Benjamin Israelow, Holly N Blackburn, Sofia E Velazquez, Y Grace Chen, Stephanie Halene, Akiko Iwasak, Eric Meffre, Michel C Nussenzweig, Judy Lieberman, Craig B Wilen, Yuval Kluger, Richard A Flavell
Inflammasome activation in infected macrophages drives COVID-19 pathology. Nature 606 (7914) (2022)
Amer M Zeidan, Jan Philipp Bewersdorf, Vanessa Hasle, Rory Michael Shallis, Ethan Thompson, Daniel Lopes de Menezes, Shelonidta Rose, Isaac Boss, Stephanie Halene, Torsten Haferlach, Brian Fox
Prognostic implications of mono-hit and multi-hit TP53 alterations in patients with acute myeloid leukemia and higher risk myelodysplastic syndromes treated with azacitidine-based therapy. Leukemia (2022)
Amer M Zeidan, Jan Philipp Bewersdorf, Rena Buckstein, Mikkael A Sekeres, David P Steensma, Uwe Platzbecker, Sanam Loghavi, Jacqueline Boultwood, Rafael Bejar, John M Bennett, Uma Borate, Andrew M Brunner, Hetty E Carraway, Jane E Churpek, Naval G Daver, Matteo Della Porta, Amy E DeZern, Fabio Efficace, Pierre Fenaux, Maria E Figueroa, Peter Greenberg, Elizabeth A Griffiths, Stephanie Halene, Robert P Hasserjian, Christopher S Hourigan, Nina Kim, Tae Kon Kim, Rami S Komrokji, Vijay Kutchroo, Alan F List, Richard F Little, Ravindra Majeti, Aziz Nazha, Stephen D Nimer, Olatoyosi Odenike, Eric Padron, Mirinal S Patnaik, Gail J Roboz, David A Sallman, Guillermo F Sanz, Maximilian Stahl, Daniel T Starczynowski, Justin Taylor, Zhuoer Xie, Mina L Xu, Michael R Savona, Andrew H Wei, Omar Abdel-Wahab, Valeria Santini
Finding consistency in classifications of myeloid neoplasms: a perspective on behalf of the International Workshop for Myelodysplastic Syndromes. Leukemia 36 (12) (2022)
Dongjoo Kim, Giulia Biancon, Zhiliang Bai, Jennifer VanOudenhove, Yuxin Liu, Shalin Kothari, Lohith Gowda, Jennifer M Kwan, Nicholas Carlos Buitrago-Pocasangre, Nikhil Lele, Hiromitsu Asashima, Michael K Racke, JoDell E Wilson, Tara S Givens, Mary M Tomayko, Wade L Schulz, Erin E Longbrake, David A Hafler, Stephanie Halene, Rong Fan
Microfluidic immuno-serology assay revealed a limited diversity of protection against COVID-19 in patients with altered immunity. bioRxiv : the preprint server for biology (2022)
Yanxiang Deng, Marek Bartosovic, Sai Ma, Di Zhang, Petra Kukanja, Yang Xiao, Graham Su, Yang Liu, Xiaoyu Qin, Gorazd B Rosoklija, Andrew J Dwork, Robyn S Klein, Mina L Xu, Stephanie Halene, Joseph E Craft, Kam W Leong, Maura Boldrini, Gonçalo Castelo-Branco, Rong Fan
Spatial profiling of chromatin accessibility in mouse and human tissues. Nature 609 (7926) (2022)
Maximilian Stahl, Omar Abdel-Wahab, Andrew H Wei, Michael R Savona, Mina L Xu, Zhuoer Xie, Justin Taylor, Daniel T Starczynowski, Guillermo F Sanz, David A Sallman, Valeria Santini, Gail J Roboz, Mirinal S Patnaik, Eric Padron, Olatoyosi Odenike, Aziz Nazha, Stephen D Nimer, Ravindra Majeti, Richard F Little, Steven D Gore, Alan F List, Vijay Kuchroo, Rami S Komrokji, Tae Kon Kim, Nina Kim, Christopher S Hourigan, Robert P Hasserjian, Stephanie Halene, Elizabeth A Griffiths, Peter L Greenberg, Maria E Figueroa, Pierre Fenaux, Fabio Efficace, Amy E DeZern, Matteo G Della Porta, Naval G Daver, Jane E Churpek, Hetty E Carraway, Andrew M Brunner, Uma Borate, John M Bennett, Rafael Bejar, Jacqueline Boultwood, Sanam Loghavi, Jan Philipp Bewersdorf, Uwe Platzbecker, David P Steensma, Mikkael A Sekeres, Rena J Buckstein, Amer M Zeidan
An agenda to advance research in MDS: A TOP 10 Priority List from the first international workshop in MDS (iwMDS). Blood advances (2022)
Esen Sefik, Benjamin Israelow, Haris Mirza, Jun Zhao, Rihao Qu, Eleanna Kaffe, Eric Song, Stephanie Halene, Eric Meffre, Yuval Kluger, Michel C Nussenzweig, Craig B Wilen, Akiko Iwasak, Richard A Flavell
A humanized mouse model of chronic COVID-19. Nature biotechnology 40 (6) (2021)
Yuan-Bin Song, Liang Shan, Rana Gbyli, Wei Liu, Till Strowig, Amisha Patel, Xiaoying Fu, Xiaman Wang, Mina L Xu, Yimeng Gao, Ashley Qin, Emanuela M Bruscia, Toma Tebaldi, Giulia Biancon, Padmavathi Mamillapalli, David Urbonas, Elizabeth Eynon, David G Gonzalez, Jie Chen, Diane S Krause, Jonathan Alderman, Stephanie Halene, Richard A Flavell
Combined liver-cytokine humanization comes to the rescue of circulating human red blood cells. Science (New York, N.Y.) 371 (6533) (2021)
Esen Sefik, Ben Israelow, Jun Zhao, Rihao Qu, Eric Song, Haris Mirza, Eleanna Kaffe, Stephanie Halene, Eric Meffre, Yuval Kluger, Michel C Nussenzweig, Craig B Wilen, Akiko Iwasak, Richard A Flavell
A humanized mouse model of chronic COVID-19 to evaluate disease mechanisms and treatment options. Research square (2021)
Esen Sefik, Rihao Qu, Eleanna Kaffe, Jun Zhao, Caroline Junqueira, Haris Mirza, Ricky Brewer, Ailin Han, Holly R Steach, Benjamin Israelow, Y Grace Chen, Stephanie Halene, Akiko Iwasak, Eric Meffre, Michel Nussenzweig, Judy Lieberman, Craig B Wilen, Yuval Kluger, Richard A Flavell
Viral replication in human macrophages enhances an inflammatory cascade and interferon driven chronic COVID-19 in humanized mice. bioRxiv : the preprint server for biology (2021)
Yuan-Bin Song, Anthony Rongvaux, Ashley Taylor, Tingting Jiang, Toma Tebaldi, Kunthavai Balasubramanian, Arun Bagale, Yunus Kasim Terzi, Rana Gbyli, Xiaman Wang, Xiaoying Fu, Yimeng Gao, Jun Zhao, Nikolai A Podoltsev, Mina Xu, Natalia Neparidze, Ellice Wong, Richard Torres, Emanuela M Bruscia, Yuval Kluger, Markus Gabriel Manz, Richard A Flavell, Stephanie Halene
A highly efficient and faithful MDS patient-derived xenotransplantation model for pre-clinical studies. Nature communications 10 (1) (2019)
Yang Liang, Toma Tebaldi, Kai Rejeski, Poorval Joshi, Giovanni Stefani, Ashley Taylor, Yuanbin Song, Radovan Vasic, Jamie Maziarz, Kunthavai Balasubramanian, Anastasia Ardasheva, Alicia Ding, Alessandro Quattrone, Stephanie Halene
SRSF2 mutations drive oncogenesis by activating a global program of aberrant alternative splicing in hematopoietic cells. Leukemia 32 (12) (2018)
Peter C W Gaines, Stephanie Halene
Rusty neutrophils in β-thalassemia: no traction! Blood 129 (23) (2018)
Jasmijn D E de Rooij, Cristyn Branstetter, Jing Ma, Yongjin Li, Michael P Walsh, Jinjun Cheng, Askar Obulkasim, Jinjun Dang, John Easton, Lonneke J Verboon, Heather L Mulder, Martin Zimmermann, Cary Koss, Pankaj Gupta, Michael Edmonson, Michael C Rusch, Joshua Yew Suang Lim, Katarina Reinhardt, Martina Pigazzi, Guangchun Song, Allen Eng-Juh Yeoh, Lee-Yung Shih, Der-Cherng Liang, Stephanie Halene, Diane S Krause, Jinghui Zhang, James R Downing, Franco Locatelli, Dirk Reinhardt, Marry M van den Heuvel-Eibrink, C Michel Zwaan, Maarten Fornerod, Tanja A Gruber
Pediatric non-Down syndrome acute megakaryoblastic leukemia is characterized by distinct genomic subsets with varying outcomes. Nature genetics 49 (3) (2017)
Poorval Joshi, Stephanie Halene, Omar Abdel-Wahab
How do messenger RNA splicing alterations drive myelodysplasia? Blood 129 (18) (2017)
Krishnakumar Malu, Rahul Garhwal, Margery G H Pelletier, Deepali Gotur, Stephanie Halene, Monika Zwerger, Zhong-Fa Yang, Alan G Rosmarin, Peter C W Gaines
Cooperative Activity of GABP with PU.1 or C/EBPε Regulates Lamin B Receptor Gene Expression, Implicating Their Roles in Granulocyte Nuclear Maturation. Journal of immunology (Baltimore, Md. : 1950) 197 (3) (2016)