Fengzhu Sun

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 19

Top Venues

Nature communications

Genome biology

PLoS computational biology

Proceedings of the National Academy of Sciences of the United States of America

University of Southern California (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Southern California

United States

PHD :: Mathematics

Peking University

China

MSC :: Probability and Statistics

Shandong University

China

BSC :: Mathematics

Publications

Ziye Wang, Ronghui You, Haitao Han, Wei Liu, Fengzhu Sun, Shanfeng Zhu
Effective binning of metagenomic contigs using contrastive multi-view representation learning. Nature communications 15 (1) (2024)
Mary L Stackpole, Weihua Zeng, Shuo Li, Chun-Chi Liu, Yonggang Zhou, Shanshan He, Angela Yeh, Ziye Wang, Fengzhu Sun, Qingjiao Li, Zuyang Yuan, Asli Yildirim, Pin-Jung Chen, Paul Winograd, Benjamin Tran, Yi-Te Lee, Paul Shize Li, Zorawar Noor, Megumi Yokomizo, Preeti Ahuja, Yazhen Zhu, Hsian-Rong Tseng, James S Tomlinson, Edward B Garon, Samuel W French, Clara E Magyar, Sarah Dry, Clara Lajonchere, Daniel H Geschwind, Gina Choi, Sammy Saab, Frank Alber, Wing Hung Wong, Steven M Dubinett, Denise R Aberle, Vatche G Agopian, Steven-Huy B Han, Xiaohui Ni, Wenyuan Li, Xianghong Jasmine Zhou
Author Correction: Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer. Nature communications 15 (1) (2024)
Ziye Wang, Ronghui You, Haitao Han, Wei Liu, Fengzhu Sun, Shanfeng Zhu
Effective binning of metagenomic contigs using contrastive multi-view representation learning. Nature communications 15 (1) (2024)
Mary L Stackpole, Weihua Zeng, Shuo Li, Chun-Chi Liu, Yonggang Zhou, Shanshan He, Angela Yeh, Ziye Wang, Fengzhu Sun, Qingjiao Li, Zuyang Yuan, Asli Yildirim, Pin-Jung Chen, Paul Winograd, Benjamin Tran, Yi-Te Lee, Paul Shize Li, Zorawar Noor, Megumi Yokomizo, Preeti Ahuja, Yazhen Zhu, Hsian-Rong Tseng, James S Tomlinson, Edward B Garon, Samuel W French, Clara E Magyar, Sarah Dry, Clara Lajonchere, Daniel H Geschwind, Gina Choi, Sammy Saab, Frank Alber, Wing Hung Wong, Steven M Dubinett, Denise R Aberle, Vatche G Agopian, Steven-Huy B Han, Xiaohui Ni, Wenyuan Li, Xianghong Jasmine Zhou
Author Correction: Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer. Nature communications 15 (1) (2024)
Ziye Wang, Ronghui You, Haitao Han, Wei Liu, Fengzhu Sun, Shanfeng Zhu
Effective binning of metagenomic contigs using contrastive multi-view representation learning. Nature communications 15 (1) (2024)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Yilin Gao, Fengzhu Sun
Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies. PLoS computational biology 19 (10) (2023)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Yuxuan Du, Fengzhu Sun
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data. Nature communications 14 (1) (2023)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Mary L Stackpole, Weihua Zeng, Shuo Li, Chun-Chi Liu, Yonggang Zhou, Shanshan He, Angela Yeh, Ziye Wang, Fengzhu Sun, Qingjiao Li, Zuyang Yuan, Asli Yildirim, Pin-Jung Chen, Paul Winograd, Benjamin Tran, Yi-Te Lee, Paul Shize Li, Zorawar Noor, Megumi Yokomizo, Preeti Ahuja, Yazhen Zhu, Hsian-Rong Tseng, James S Tomlinson, Edward B Garon, Samuel W French, Clara E Magyar, Sarah Dry, Clara Lajonchere, Daniel H Geschwind, Gina Choi, Sammy Saab, Frank Alber, Wing Hung Wong, Steven M Dubinett, Denise R Aberle, Vatche G Agopian, Steven-Huy B Han, Xiaohui Ni, Wenyuan Li, Xianghong Jasmine Zhou
Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer. Nature communications 13 (1) (2022)
Yu Wang, Fengzhu Sun, Wei Lin, Shuqin Zhang
AC-PCoA: Adjustment for confounding factors using principal coordinate analysis. PLoS computational biology 18 (7) (2022)
Zifan Zhu, Yingying Fan, Yinfei Kong, Jinchi Lv, Fengzhu Sun
DeepLINK: Deep learning inference using knockoffs with applications to genomics. Proceedings of the National Academy of Sciences of the United States of America 118 (36) (2022)
Yuxuan Du, Fengzhu Sun
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps. Genome biology 23 (1) (2022)
Wenxuan Zuo, Beibei Wang, Xin Bai, Yihui Luan, Yingying Fan, Sonia Michail, Fengzhu Sun
16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis. Scientific reports 12 (1) (2022)
Zifan Zhu, Jie Ren, Sonia Michail, Fengzhu Sun
MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations. Genome biology 20 (1) (2019)
Kujin Tang, Jie Ren, Fengzhu Sun
Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression. Genome biology 20 (1) (2019)
Xin Bai, Jian-An Jia, Meng Fang, Shipeng Chen, Xiaotao Liang, Shanfeng Zhu, Shuqin Zhang, Jianfeng Feng, Fengzhu Sun, Chunfang Gao
Deep sequencing of HBV pre-S region reveals high heterogeneity of HBV genotypes and associations of word pattern frequencies with HCC. PLoS genetics 14 (2) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Fengzhu Sun