Jed A Fuhrman

ResearcherID Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

Nature communications

The ISME journal

ISME communications

Nature microbiology

University of Southern California

University of California San Diego Scripps Institution of Oceanography (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Southern California

United States

Professor :: Biological Sciences

Education History

University of California San Diego Scripps Institution of Oceanography

United States

PHD

Publications

Sarah M Laperriere, Benjamin Minch, Jake L Weissman, Shengwei Hou, Yi-Chun Yeh, J Cesar Ignacio-Espinoza, Nathan A Ahlgren, Mohammad Moniruzzaman, Jed A Fuhrman
Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series. bioRxiv : the preprint server for biology (2024)
Sarah M Laperriere, Benjamin Minch, Jake L Weissman, Shengwei Hou, Yi-Chun Yeh, J Cesar Ignacio-Espinoza, Nathan A Ahlgren, Mohammad Moniruzzaman, Jed A Fuhrman
Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series. bioRxiv : the preprint server for biology (2024)
Sarah M Laperriere, Benjamin Minch, Jake L Weissman, Shengwei Hou, Yi-Chun Yeh, J Cesar Ignacio-Espinoza, Nathan A Ahlgren, Mohammad Moniruzzaman, Jed A Fuhrman
Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series. bioRxiv : the preprint server for biology (2024)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Francisco Pascoal, Maria Paola Tomasino, Roberta Piredda, Grazia Marina Quero, Luís Torgo, Julie Poulain, Pierre E Galand, Jed A Fuhrman, Alex Mitchell, Tinkara Tinta, Timotej Turk Dermastia, Antonio Fernandez-Guerra, Alessandro Vezzi, Ramiro Logares, Francesca Malfatti, Hisashi Endo, Anna Maria Dąbrowska, Fabio De Pascale, Pablo Sánchez, Nicolas Henry, Bruno Fosso, Bryan Wilson, Stepan V Toshchakov, Gregory Kevin Ferrant, Ivo Grigorov, Fabio Rocha Jimenez Vieira, Rodrigo Costa, Stéphane Pesant, Catarina Magalhães
Inter-comparison of marine microbiome sampling protocols. ISME communications 3 (1) (2023)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Colette Fletcher-Hoppe, Yi-Chun Yeh, Yubin Raut, J L Weissman, Jed A Fuhrman
Symbiotic UCYN-A strains co-occurred with El Niño, relaxed upwelling, and varied eukaryotes over 10 years off Southern California. ISME communications 3 (1) (2023)
Yuxuan Du, Jed A Fuhrman, Fengzhu Sun
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data. Nature communications 14 (1) (2023)
Yi-Chun Yeh, Jed A Fuhrman
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure. Nature communications 13 (1) (2022)
Yi-Chun Yeh, Jed A Fuhrman
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure. Nature communications 13 (1) (2022)
Yi-Chun Yeh, Jed A Fuhrman
Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series. ISME communications 2 (1) (2022)
Yi-Chun Yeh, Jed A Fuhrman
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure. Nature communications 13 (1) (2022)
Yi-Chun Yeh, Jed A Fuhrman
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure. Nature communications 13 (1) (2022)
Jake L Weissman, Marie Peras, Tyler P Barnum, Jed A Fuhrman
Benchmarking Community-Wide Estimates of Growth Potential from Metagenomes Using Codon Usage Statistics. mSystems 7 (5) (2022)
Yi-Chun Yeh, Jed A Fuhrman
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure. Nature communications 13 (1) (2022)
Ella T Sieradzki, Michael Morando, Jed A Fuhrman
Metagenomics and Quantitative Stable Isotope Probing Offer Insights into Metabolism of Polycyclic Aromatic Hydrocarbon Degraders in Chronically Polluted Seawater. mSystems 6 (3) (2021)
Andrew M Long, Shengwei Hou, J Cesar Ignacio-Espinoza, Jed A Fuhrman
Benchmarking microbial growth rate predictions from metagenomes. The ISME journal 15 (1) (2020)
Ella T Sieradzki, J Cesar Ignacio-Espinoza, David M Needham, Erin B Fichot, Jed A Fuhrman
Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes. Nature communications 10 (1) (2019)
J Cesar Ignacio-Espinoza, Nathan A Ahlgren, Jed A Fuhrman
Long-term stability and Red Queen-like strain dynamics in marine viruses. Nature microbiology 5 (2) (2019)
Laura Gómez-Consarnau, John A Raven, Naomi M Levine, Lynda S Cutter, Deli Wang, Brian Seegers, Javier Arístegui, Jed A Fuhrman, Josep M Gasol, Sergio A Sañudo-Wilhelmy
Microbial rhodopsins are major contributors to the solar energy captured in the sea. Science advances 5 (8) (2019)
Nathan A Ahlgren, Jessica N Perelman, Yi-Chun Yeh, Jed A Fuhrman
Multi-year dynamics of fine-scale marine cyanobacterial populations are more strongly explained by phage interactions than abiotic, bottom-up factors. Environmental microbiology 21 (8) (2019)
Nathan A Ahlgren, Clara A Fuchsman, Gabrielle Rocap, Jed A Fuhrman
Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes. The ISME journal 13 (3) (2018)
Simon Roux, Evelien M Adriaenssens, Bas E Dutilh, Eugene V Koonin, Andrew M Kropinski, Mart Krupovic, Jens H Kuhn, Rob Lavigne, J Rodney Brister, Darren P Martin, Clara Amid, Ramy K Aziz, Seth R Bordenstein, Peer Bork, Mya Breitbart, Guy R Cochrane, Rebecca A Daly, Christelle Desnues, Melissa B Duhaime, Joanne B Emerson, François Enault, Jed A Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L Hurwitz, Natalia N Ivanova, Jessica M Labonté, Kyung-Bum Lee, Rex R Malmstrom, Manuel Martinez-Garcia, Ilene Karsch Mizrachi, Hiroyuki Ogata, A David Páez-Espino, Marie-Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodriguez-Valera, Karyna Rosario, Lynn Schriml, Frederik Schulz, Grieg F Steward, Matthew B Sullivan, Shinichi Sunagawa, Curtis A Suttle, Ben Temperton, Susannah G Tringe, Rebecca Vega Thurber, Nicole Suzanne Webster, Katrine L Whiteson, Steven W Wilhelm, K Eric Wommack, Tanja Woyke, Kelly C Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark J Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature biotechnology 37 (1) (2018)
Mark V Brown, Jodie van de Kamp, Martin Ostrowski, Justin R Seymour, Tim Ingleton, Lauren F Messer, Thomas Jeffries, Nahshon Siboni, Bonnie Laverock, Jaume Bibiloni-Isaksson, Tiffanie Maree Nelson, Frank Coman, Claire H Davies, Dion Frampton, Mark Rayner, Kirianne Goossen, Stan Robert, Bronwyn Holmes, Guy C J Abell, Pascal Craw, Tim Kahlke, Swan Li San Sow, Kirsty McAllister, Jonathan Windsor, Michele Skuza, Ryan Crossing, Nicole Patten, Paul Malthouse, Paul D van Ruth, Ian Paulsen, Jed A Fuhrman, Anthony Richardson, Jason Koval, Andrew Bissett, Anna Fitzgerald, Tim Moltmann, Levente Bodrossy
Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Scientific data 5 (2018)
Lyria Berdjeb, Alma Parada, David M Needham, Jed A Fuhrman
Short-term dynamics and interactions of marine protist communities during the spring-summer transition. The ISME journal 12 (8) (2018)
David M Needham, Erin B Fichot, Ellice Wang, Lyria Berdjeb, Jacob A Cram, Cédric G Fichot, Jed A Fuhrman
Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling. The ISME journal 12 (10) (2018)
Alma E Parada, Jed A Fuhrman
Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor. The ISME journal 11 (11) (2017)
Charles H Wigington, Derek Sonderegger, Corina P D Brussaard, Alison Buchan, Jan F Finke, Jed A Fuhrman, Jay T Lennon, Mathias Middelboe, Curtis A Suttle, Charles Stock, William H Wilson, K Eric Wommack, Steven W Wilhelm, Joshua S Weitz
Re-examination of the relationship between marine virus and microbial cell abundances. Nature microbiology 1 (2016)
David M Needham, Jed A Fuhrman
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom. Nature microbiology 1 (2016)
Sophie Weiss, Will Van Treuren, Catherine A Lozupone, Karoline Faust, Jonathan Friedman, Ye Deng, Li Charlie Xia, Zhenjiang Zech Xu, Luke Ursell, Eric J Alm, Amanda Birmingham, Jacob A Cram, Jed A Fuhrman, Jeroen Raes, Fengzhu Sun, Jizhong Zhou, Rob Knight
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The ISME journal 10 (7) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jed A Fuhrman