Francisco Fernandez Lima (Francisco Alberto Fernandez-Lima, F Fernandez-Lima, Francisco A Fernandez-Lima, Francisco Fernandez-Lima)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 57

Top Topics

Molecular Dynamics

Mass Spectrometry

Top Venues

Analytical chemistry

Journal of the American Society for Mass Spectrometry

Environmental science & technology

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Pablo R B Oliveira, Dennys Leyva, Lilian V Tose, Chad R Weisbrod, Anton N Kozhinov, Konstantin O Nagornov, Yury O Tsybin, Francisco Fernandez Lima
Revisiting Dissolved Organic Matter Analysis Using High-Resolution Trapped Ion Mobility and FT-ICR Mass Spectrometry. Journal of the American Society for Mass Spectrometry (2024)
Kevin Jeanne Dit Fouque, Meiby Fernandez-Rojas, Anelis E Roque, Francisco Fernandez Lima
Top-Down Structural Characterization of Native Ubiquitin Combining Solution-Stable Isotope Labeling, Trapped Ion Mobility Spectrometry, and Tandem Electron Capture Dissociation Mass Spectrometry. Analytical chemistry (2024)
Cassandra N Fuller, Lilian Valadares Tose, Francisca N L Vitorino, Natarajan V Bhanu, Erin M Panczyk, Melvin A Park, Benjamin A Garcia, Francisco Fernandez Lima
Bottom-up Histone Post-translational Modification Analysis using Liquid Chromatography, Trapped Ion Mobility Spectrometry, and Tandem Mass Spectrometry. Journal of proteome research (2024)
Kevin Jeanne Dit Fouque, Juan Camilo Molano-Arevalo, Fenfei Leng, Francisco Fernandez Lima
Conformational and Structural Characterization of Knotted Proteins. Biochemistry (2024)
Samuel A Miller, Kevin Jeanne Dit Fouque, Alexander Moiseevich Mebel, Kevin Brown Chandler, Francisco Fernandez Lima
Gas-Phase Structures of Fucosylated Oligosaccharides: Alkali Metal and Halogen Influences. The journal of physical chemistry. B (2024)
Dennys Leyva, Muhammad Usman Tariq, Rudolf Jaffé, Fahad Saeed, Francisco Fernandez Lima
Description of Dissolved Organic Matter Transformational Networks at the Molecular Level. Environmental science & technology (2023)
Dennys Leyva, Muhammad Usman Tariq, Rudolf Jaffé, Fahad Saeed, Francisco Fernandez Lima
Description of Dissolved Organic Matter Transformational Networks at the Molecular Level. Environmental science & technology 57 (6) (2023)
Md Shofiul Alam, Dennys Leyva, Woodline Michelin, Francisco Fernandez Lima, Jaroslava Miksovska
Distinct mechanism of Tb 3+ and Eu 3+ binding to NCS1. Physical chemistry chemical physics : PCCP (2023)
Miguel Santos-Fernandez, Kevin Jeanne Dit Fouque, Francisco Fernandez Lima
Integration of Trapped Ion Mobility Spectrometry and Ultraviolet Photodissociation in a Quadrupolar Ion Trap Mass Spectrometer. Analytical chemistry (2023)
German Mejia, Linjia Su, Popular Pandey, Kevin Jeanne Dit Fouque, Anthony J McGoron, Francisco Fernandez Lima, Jin He, Alexander Moiseevich Mebel, Fenfei Leng
Anticancer Drug Doxorubicin Spontaneously Reacts with GTP and dGTP. Chemical research in toxicology (2023)
Dennys Leyva, Muhammad Usman Tariq, Rudolf Jaffé, Fahad Saeed, Francisco Fernandez Lima
Description of Dissolved Organic Matter Transformational Networks at the Molecular Level. Environmental science & technology 57 (6) (2023)
Dennys Leyva, Muhammad Usman Tariq, Rudolf Jaffé, Fahad Saeed, Francisco Fernandez Lima
Description of Dissolved Organic Matter Transformational Networks at the Molecular Level. Environmental science & technology 57 (6) (2023)
Samuel A Miller, Kevin Jeanne Dit Fouque, Eldon R Hard, Aaron T Balana, Desmond Kaplan, Valery G Voinov, Mark E Ridgeway, Melvin A Park, Gordon A Anderson, Matthew R Pratt, Francisco Fernandez Lima
Top/Middle-Down Characterization of α-Synuclein Glycoforms. Analytical chemistry (2023)
Anthony Castellanos, Richard H Gomer, Francisco Fernandez Lima
Submicron 3-D mass spectrometry imaging reveals an asymmetric molecular distribution on chemotaxing cells. F1000Research 11 (2022)
Kevin Jeanne Dit Fouque, Sarah N Sipe, Alyssa Garabedian, German Mejia, Linjia Su, Md Lokman Hossen, Prem P Chapagain, Fenfei Leng, Jennifer S Brodbelt, Francisco Fernandez Lima
Exploring the Conformational and Binding Dynamics of HMGA2·DNA Complexes Using Trapped Ion Mobility Spectrometry-Mass Spectrometry. Journal of the American Society for Mass Spectrometry 33 (7) (2022)
Lilian V Tose, Cesar E Ramirez, Veronika Michalkova, Marcela Nouzova, Fernando G Noriega, Francisco Fernandez Lima
Coupling Stable Isotope Labeling and Liquid Chromatography-Trapped Ion Mobility Spectrometry-Time-of-Flight-Tandem Mass Spectrometry for De Novo Mosquito Ovarian Lipid Studies. Analytical chemistry 94 (16) (2022)
Sara Forcisi, Franco Moritz, Christopher J Thompson, Basem Kanawati, Jenny Uhl, Carlos Afonso, Chantal D Bader, Aiko Barsch, Berin A Boughton, Rosalie K Chu, Justine Ferey, Francisco Fernandez Lima, Céline Guéguen, Dimitri Heintz, Mario Gomez-Hernandez, Kyoung-Soon Jang, Nikolas Kessler, Vaughn Mangal, Daniel Krug, Ryo Nakabayashi, Edith Nicol, Simone Nicolardi, Magnus Palmblad, Ljiljana Paša-Tolić, Jacob Porter, Isabelle Schmitz-Afonso, Jong Bok Seo, Eduardo Sommella, Yuri E M van der Burgt, Claire Villette, Matthias Witt, Ashley Wittrig, Jeremy J Wolff, Michael L Easterling, Frank H Laukien, Philippe Schmitt-Kopplin
Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems. Journal of the American Society for Mass Spectrometry 33 (12) (2022)
Yarixa L Cintron-Diaz, Mario E Gomez-Hernandez, Marthe M H A Verhaert, Peter D E M Verhaert, Francisco Fernandez Lima
Spatially Resolved Neuropeptide Characterization from Neuropathological Formalin-Fixed, Paraffin-Embedded Tissue Sections by a Combination of Imaging MALDI FT-ICR Mass Spectrometry Histochemistry and Liquid Extraction Surface Analysis-Trapped Ion Mobility Spectrometry-Tandem Mass Spectrometry. Journal of the American Society for Mass Spectrometry 33 (4) (2022)
Dennys Leyva, Muhammad Usman Tariq, Rudolf Jaffé, Fahad Saeed, Francisco Fernandez Lima
Unsupervised Structural Classification of Dissolved Organic Matter Based on Fragmentation Pathways. Environmental science & technology 56 (2) (2022)
Md Shofiul Alam, Samiol Azam, Khoa Pham, Dennys Leyva, Kevin Jeanne Dit Fouque, Francisco Fernandez Lima, Jaroslava Miksovska
Nanomolar affinity of EF-hands in neuronal calcium sensor 1 for bivalent cations Pb2+, Mn2+, and Hg2. Metallomics : integrated biometal science 14 (7) (2022)
Sarah N Sipe, Kevin Jeanne Dit Fouque, Alyssa Garabedian, Fenfei Leng, Francisco Fernandez Lima, Jennifer S Brodbelt
Exploring the Conformations and Binding Location of HMGA2·DNA Complexes Using Ion Mobility Spectrometry and 193 nm Ultraviolet Photodissociation Mass Spectrometry. Journal of the American Society for Mass Spectrometry 33 (7) (2022)
Kevin Jeanne Dit Fouque, Samuel A Miller, Khoa N Pham, Natarajan V Bhanu, Yarixa L Cintron-Diaz, Dennys Leyva, Desmond Kaplan, Valery G Voinov, Mark E Ridgeway, Melvin A Park, Benjamin A Garcia, Francisco Fernandez Lima
Top-"Double-Down" Mass Spectrometry of Histone H4 Proteoforms: Tandem Ultraviolet-Photon and Mobility/Mass-Selected Electron Capture Dissociations. Analytical chemistry 94 (44) (2022)
Samuel A Miller, Kevin Jeanne Dit Fouque, Mark E Ridgeway, Melvin A Park, Francisco Fernandez Lima
Trapped Ion Mobility Spectrometry, Ultraviolet Photodissociation, and Time-of-Flight Mass Spectrometry for Gas-Phase Peptide Isobars/Isomers/Conformers Discrimination. Journal of the American Society for Mass Spectrometry 33 (7) (2022)
Anthony Castellanos, Richard H Gomer, Francisco Fernandez Lima
Submicron 3-D mass spectrometry imaging reveals an asymmetric molecular distribution on chemotaxing cells. F1000Research 11 (2022)
Alyssa Garabedian, Kevin Jeanne Dit Fouque, Prem P Chapagain, Fenfei Leng, Francisco Fernandez Lima
AT-hook peptides bind the major and minor groove of AT-rich DNA duplexes. Nucleic acids research 50 (5) (2022)
Khoa N Pham, Yasir Mamun, Francisco Fernandez Lima
Structural Heterogeneity of Human Histone H2A.1. The journal of physical chemistry. B 125 (19) (2021)
Kevin Jeanne Dit Fouque, Julian D Hegemann, Miguel Santos-Fernandez, Tung T Le, Mario Gomez-Hernandez, Wilfred A van der Donk, Francisco Fernandez Lima
Exploring structural signatures of the lanthipeptide prochlorosin 2.8 using tandem mass spectrometry and trapped ion mobility-mass spectrometry. Analytical and bioanalytical chemistry 413 (19) (2021)
Kevin Jeanne Dit Fouque, Valeriu Scutelnic, Julian D Hegemann, Sylvie Rebuffat, Philippe Maître, Thomas R Rizzo, Francisco Fernandez Lima
Structural Insights from Tandem Mass Spectrometry, Ion Mobility-Mass Spectrometry, and Infrared/Ultraviolet Spectroscopy on Sphingonodin I: Lasso vs Branched-Cyclic Topoisomers. Journal of the American Society for Mass Spectrometry 32 (4) (2021)
Khoa N Pham, Francisco Fernandez Lima
Structural Characterization of Human Histone H4.1 by Tandem Nonlinear and Linear Ion Mobility Spectrometry Complemented with Molecular Dynamics Simulations. ACS omega 6 (44) (2021)
Clement A Olanrewaju, Cesar E Ramirez, Francisco Fernandez Lima
Comprehensive Screening of Polycyclic Aromatic Hydrocarbons and Similar Compounds Using GC-APLI-TIMS-TOFMS/GC-EI-MS. Analytical chemistry 93 (15) (2021)
Kevin Jeanne Dit Fouque, Alyssa Garabedian, Fenfei Leng, Yuk-Ching Tse-Dinh, Mark E Ridgeway, Melvin A Park, Francisco Fernandez Lima
Trapped Ion Mobility Spectrometry of Native Macromolecular Assemblies. Analytical chemistry 93 (5) (2021)
Julian D Hegemann, Kevin Jeanne Dit Fouque, Miguel Santos-Fernandez, Francisco Fernandez Lima
A Bifunctional Leader Peptidase/ABC Transporter Protein Is Involved in the Maturation of the Lasso Peptide Cochonodin I from Streptococcus suis. Journal of natural products 84 (10) (2021)
Tung T Le, Kevin Jeanne Dit Fouque, Miguel Santos-Fernandez, Claudio D Navo, Gonzalo Jiménez-Osés, Raymond Sarksian, Francisco Fernandez Lima, Wilfred A van der Donk
Substrate Sequence Controls Regioselectivity of Lanthionine Formation by ProcM. Journal of the American Chemical Society 143 (44) (2021)
Marcela Nouzova, Marten J Edwards, Veronika Michalkova, Cesar E Ramirez, Marnie Ruiz, Maria Areiza, Matthew J DeGennaro, Francisco Fernandez Lima, René Feyereisen, Marek Jindra, Fernando G Noriega
Epoxidation of juvenile hormone was a key innovation improving insect reproductive fitness. Proceedings of the National Academy of Sciences of the United States of America 118 (45) (2021)
Kevin Jeanne Dit Fouque, Desmond Kaplan, Valery G Voinov, Frederik H V Holck, Ole Nørregaard Jensen, Francisco Fernandez Lima
Proteoform Differentiation using Tandem Trapped Ion Mobility, Electron Capture Dissociation, and ToF Mass Spectrometry. Analytical chemistry 93 (27) (2021)
Emma K Sisley, Jakub Ujma, Martin E Palmer, Kevin Giles, Francisco Fernandez Lima, Helen J Cooper
LESA Cyclic Ion Mobility Mass Spectrometry of Intact Proteins from Thin Tissue Sections. Analytical chemistry 92 (9) (2020)
J Porter, K Jeanne Dit Fouque, Jaroslava Miksovska, Francisco Fernandez Lima
Salt bridges govern the structural heterogeneity of heme protein interactions and porphyrin networks: microperoxidase-11. RSC advances 10 (56) (2020)
Kevin Jeanne Dit Fouque, Francisco Fernandez Lima
Following Structural Changes by Thermal Denaturation Using Trapped Ion Mobility Spectrometry-Mass Spectrometry. The journal of physical chemistry. B 124 (29) (2020)
Dennys Leyva, Rudolf Jaffé, Francisco Fernandez Lima
Structural Characterization of Dissolved Organic Matter at the Chemical Formula Level Using TIMS-FT-ICR MS/MS. Analytical chemistry 92 (17) (2020)
Jacob E Porter, Prem Chapagain, Francisco Fernandez Lima
Single-stranded DNA structural diversity: TAGGGT from monomers to dimers to tetramer formation. Rapid communications in mass spectrometry : RCM (2019)
Salvador Hernández-Martínez, Víctor Cardoso-Jaime, Marcela Nouzova, Veronika Michalkova, Cesar E Ramirez, Francisco Fernandez Lima, Fernando G Noriega
Juvenile hormone controls ovarian development in female Anopheles albimanus mosquitoes. Scientific reports 9 (1) (2019)
Kevin Jeanne Dit Fouque, Javier Moreno, Francisco Fernandez Lima
Exploring the Conformational Space of Growth-Hormone-Releasing Hormone Analogues Using Dopant Assisted Trapped Ion Mobility Spectrometry-Mass Spectrometry. The journal of physical chemistry. B 123 (29) (2019)
Kevin Jeanne Dit Fouque, Julian D Hegemann, Séverine Zirah, Sylvie Rebuffat, Ewen Lescop, Francisco Fernandez Lima
Evidence of Cis/Trans-Isomerization at Pro7/Pro16 in the Lasso Peptide Microcin J25. Journal of the American Society for Mass Spectrometry 30 (6) (2019)
Kevin Jeanne Dit Fouque, Cesar E Ramirez, Russell L Lewis, Jeremy P Koelmel, Timothy J Garrett, Richard A Yost, Francisco Fernandez Lima
Effective Liquid Chromatography-Trapped Ion Mobility Spectrometry-Mass Spectrometry Separation of Isomeric Lipid Species. Analytical chemistry 91 (8) (2019)
Nicholas R Oranzi, Robin H J Kemperman, Michael S Wei, Violeta I Petkovska, Scott W Granato, Benjamin Rochon, Julia Kaszycki, Aurelio La Rotta, Kevin Jeanne Dit Fouque, Francisco Fernandez Lima, Richard A Yost
Measuring the Integrity of Gas-Phase Conformers of Sodiated 25-Hydroxyvitamin D3 by Drift Tube, Traveling Wave, Trapped, and High-Field Asymmetric Ion Mobility. Analytical chemistry 91 (6) (2019)
Anthony Castellanos, Mario Gomez Hernandez, Marjana Tomic-Canic, Ivan Jozic, Francisco Fernandez Lima
Multimodal, in Situ Imaging of Ex Vivo Human Skin Reveals Decrease of Cholesterol Sulfate in the Neoepithelium during Acute Wound Healing. Analytical chemistry 92 (1) (2019)
David Butcher, Jaroslava Miksovska, Mark E Ridgeway, Melvin A Park, Francisco Fernandez Lima
The effects of solution additives and gas-phase modifiers on the molecular environment and conformational space of common heme proteins. Rapid communications in mass spectrometry : RCM 33 (5) (2019)
Lilian V Tose, Paolo Benigni, Dennys Leyva, Abigail Sundberg, César E Ramírez, Mark E Ridgeway, Melvin A Park, Wanderson Romão, Rudolf Jaffé, Francisco Fernandez Lima
Coupling trapped ion mobility spectrometry to mass spectrometry: trapped ion mobility spectrometry-time-of-flight mass spectrometry versus trapped ion mobility spectrometry-Fourier transform ion cyclotron resonance mass spectrometry. Rapid communications in mass spectrometry : RCM 32 (15) (2018)
Paolo Benigni, Jacob Porter, Mark E Ridgeway, Melvin A Park, Francisco Fernandez Lima
Increasing Analytical Separation and Duty Cycle with Nonlinear Analytical Mobility Scan Functions in TIMS-FT-ICR MS. Analytical chemistry 90 (4) (2018)
Kevin Jeanne Dit Fouque, Javier Moreno, Julian D Hegemann, Séverine Zirah, Sylvie Rebuffat, Francisco Fernandez Lima
Identification of Lasso Peptide Topologies Using Native Nanoelectrospray Ionization-Trapped Ion Mobility Spectrometry-Mass Spectrometry. Analytical chemistry 90 (8) (2018)
Alyssa Garabedian, Matthew A Baird, Jacob Porter, Kevin Jeanne Dit Fouque, Pavel V Shliaha, Ole Nørregaard Jensen, Todd D Williams, Francisco Fernandez Lima, Alexandre A Shvartsburg
Linear and Differential Ion Mobility Separations of Middle-Down Proteoforms. Analytical chemistry 90 (4) (2018)
David Butcher, Prem P Chapagain, Fenfei Leng, Francisco Fernandez Lima
Differentiating Parallel and Antiparallel DNA Duplexes in the Gas Phase Using Trapped Ion Mobility Spectrometry. The journal of physical chemistry. B 122 (27) (2018)
Alyssa Garabedian, Alexander Bolufer, Fenfei Leng, Francisco Fernandez Lima
Peptide Sequence Influence on the Conformational Dynamics and DNA binding of the Intrinsically Disordered AT-Hook 3 Peptide. Scientific reports 8 (1) (2018)
Alyssa Garabedian, Paolo Benigni, Cesar E Ramirez, Erin S Baker, Tao Liu, Richard D Smith, Francisco Fernandez Lima
Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS. Journal of the American Society for Mass Spectrometry 29 (5) (2017)
Juan Camilo Molano-Arevalo, Kevin Jeanne Dit Fouque, Khoa Pham, Jaroslava Miksovska, Mark E Ridgeway, Melvin A Park, Francisco Fernandez Lima
Characterization of Intramolecular Interactions of Cytochrome c Using Hydrogen-Deuterium Exchange-Trapped Ion Mobility Spectrometry-Mass Spectrometry and Molecular Dynamics. Analytical chemistry 89 (17) (2017)
Kevin Jeanne Dit Fouque, Alyssa Garabedian, Jacob Porter, Matthew Baird, Xueqin Pang, Todd D Williams, Lingjun Li, Alexandre A Shvartsburg, Francisco Fernandez Lima
Fast and Effective Ion Mobility-Mass Spectrometry Separation of d-Amino-Acid-Containing Peptides. Analytical chemistry 89 (21) (2017)
Paolo Benigni, Kathia Sandoval, Christopher J Thompson, Mark E Ridgeway, Melvin A Park, Piero Gardinali, Francisco Fernandez Lima
Analysis of Photoirradiated Water Accommodated Fractions of Crude Oils Using Tandem TIMS and FT-ICR MS. Environmental science & technology 51 (11) (2017)