Magnus Palmblad

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 47

Top Venues

Journal of proteome research

Expert review of proteomics

Journal of the American Society for Mass Spectrometry

Analytical chemistry

Leids Universitair Medisch Centrum

Uppsala Universitet (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Leids Universitair Medisch Centrum

Netherlands

Associate Professor :: Center for Proteomics and Metabolomics

Leids Universitair Medisch Centrum

Netherlands

Assistant Professor :: Department of Parasitology

University of Reading

United Kingdom

Senior Research Fellow :: The BioCentre

Lawrence Livermore National Laboratory

United States

Postdoctoral Research Associate :: Center for Accelerator Mass Spectrometry

Education History

Uppsala Universitet

Sweden

PHD :: Division of Ion Physics

Uppsala Universitet

Sweden

MSC

Publications

Julian Uszkoreit, Magnus Palmblad, Veit Schwämmle
Tackling reproducibility: lessons for the proteomics community. Expert review of proteomics (2024)
Julian Uszkoreit, Magnus Palmblad, Veit Schwämmle
Tackling reproducibility: lessons for the proteomics community. Expert review of proteomics 21 (1-3) (2024)
Julian Uszkoreit, Magnus Palmblad, Veit Schwämmle
Tackling reproducibility: lessons for the proteomics community. Expert review of proteomics 21 (1-3) (2024)
Julian Uszkoreit, Magnus Palmblad, Veit Schwämmle
Tackling reproducibility: lessons for the proteomics community. Expert review of proteomics (2024)
Nina P Bergman, Jonas Bergquist, Mikael Hedeland, Magnus Palmblad
Text Mining and Computational Chemistry Reveal Trends in Applications of Laser Desorption/Ionization Techniques to Small Molecules. Journal of the American Society for Mass Spectrometry (2024)
Julian Uszkoreit, Magnus Palmblad, Veit Schwämmle
Tackling reproducibility: lessons for the proteomics community. Expert review of proteomics 21 (1-3) (2024)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Michael R Hoopmann, Veit Schwämmle, Magnus Palmblad
2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Joanna M Kirkpatrick, Paul M Stemmer, Brian C Searle, Laura E Herring, LeRoy Martin, Mukul K Midha, Brett S Phinney, Baozhen Shan, Magnus Palmblad, Yan Wang, Pratik D Jagtap, Benjamin A Neely
2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Proteomics Study. Journal of biomolecular techniques : JBT 34 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
David Bouyssié, Pınar Altıner, Salvador Capella-Gutierrez, José María Fernandez, Yanick Paco Hagemeijer, Peter L Horvatovich, Martin Hubalek, Fredrik Levander, Pierluigi Mauri, Magnus Palmblad, Wolfgang Raffelsberger, Laura Rodríguez-Navas, Dario Di Silvestre, Balázs Tibor Kunkli, Julian Uszkoreit, Yves Vandenbrouck, Juan Antonio Vizcaino, Dirk Winkelhardt, Veit Schwämmle
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows. Journal of proteome research (2023)
Michael R Hoopmann, Veit Schwämmle, Magnus Palmblad
2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software. Journal of proteome research 22 (2) (2023)
Sara Forcisi, Franco Moritz, Christopher J Thompson, Basem Kanawati, Jenny Uhl, Carlos Afonso, Chantal D Bader, Aiko Barsch, Berin A Boughton, Rosalie K Chu, Justine Ferey, Francisco Fernandez Lima, Céline Guéguen, Dimitri Heintz, Mario Gomez-Hernandez, Kyoung-Soon Jang, Nikolas Kessler, Vaughn Mangal, Daniel Krug, Ryo Nakabayashi, Edith Nicol, Simone Nicolardi, Magnus Palmblad, Ljiljana Paša-Tolić, Jacob Porter, Isabelle Schmitz-Afonso, Jong Bok Seo, Eduardo Sommella, Yuri E M van der Burgt, Claire Villette, Matthias Witt, Ashley Wittrig, Jeremy J Wolff, Michael L Easterling, Frank H Laukien, Philippe Schmitt-Kopplin
Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems. Journal of the American Society for Mass Spectrometry 33 (12) (2022)
John Yates Iii, Ileana M Cristea, Meng-Qui Dong, Claire E Eyers, Joshua LaBaer, Jia V Li, Jeremy K Nicholson, Christopher M Overall, Magnus Palmblad, Nikolai Slavov
Want to Publish in JPR ? This Is What You Need to Know! Journal of proteome research 21 (12) (2022)
Benjamin A Neely, Magnus Palmblad
Machine Learning in Proteomics and Metabolomics. Journal of proteome research 21 (11) (2022)
Magnus Palmblad, Enahoro Asein, Nina P Bergman, Arina Ivanova, Lukas Ramasauskas, Hazzar Mohammed Reyes, Stefan Ruchti, Leonardo Soto-Jácome, Jonas Bergquist
Semantic Annotation of Experimental Methods in Analytical Chemistry. Analytical chemistry 94 (44) (2022)
Magnus Palmblad, Sebastian Böcker, Sven Degroeve, Oliver Kohlbacher, Lukas Käll, William Stafford Noble, Mathias Wilhelm
Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics. Journal of proteome research 21 (4) (2022)
Rob Marissen, Madhushri S Varunjikar, Jeroen F J Laros, Josef D Rasinger, Benjamin A Neely, Magnus Palmblad
compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets. Journal of proteome research (2022)
Anna-Lena Lamprecht, Magnus Palmblad, Jon Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J O Baker, Ammar Ben Hadj Amor, Salvador Capella, Paulos Charonyktakis, Michael R Crusoe, Yolanda Gil, Carole Goble, Timothy J Griffin, Paul Groth, Hans Ienasescu, Pratik D Jagtap, Matúš Kalaš, Vedran Kasalica, Ali Reza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szoke Szaniszlo, Suzan Verberne, Aswin Verhoeven, Katherine J Wolstencroft
Perspectives on automated composition of workflows in the life sciences. F1000Research 10 (2021)
Susan T Weintraub, Michael R Hoopmann, Magnus Palmblad
2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job. Journal of proteome research 20 (4) (2021)
Vedran Kasalica, Veit Schwämmle, Magnus Palmblad, Jon Ison, Anna-Lena Lamprecht
APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry. Journal of proteome research 20 (4) (2021)
Benjamin A Neely, Magnus Palmblad
Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics. Journal of proteome research 20 (10) (2021)
Magnus Palmblad
Theoretical Considerations for Next-Generation Proteomics. Journal of proteome research 20 (6) (2021)
Steffen Lippold, Arnoud H de Ru, Jan Nouta, Peter A van Veelen, Magnus Palmblad, Dana L E Vergoossen, Noortje de Haan
Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification. Beilstein journal of organic chemistry 16 (2020)
Michael R Hoopmann, Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David D Shteynberg, Lingjie He, Bin Xia, Stoyan H Stoychev, Gilbert S Omenn, Susan T Weintraub, Robert L Moritz
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. Journal of proteome research 19 (12) (2020)
Susan T Weintraub, Michael R Hoopmann, Magnus Palmblad
Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science. Journal of proteome research 18 (2) (2020)
Vasileios Tsiamis, Hans-Ioan Ienasescu, Dovydas Gabrielaitis, Magnus Palmblad, Veit Schwämmle, Jon Ison
One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science. Journal of proteome research 18 (10) (2019)
Magnus Palmblad
Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry. Analytical chemistry 91 (7) (2019)
Yassene Mohammed, Magnus Palmblad
Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention. Journal of separation science 41 (18) (2018)
Magnus Palmblad, Nees Jan van Eck
Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members. Journal of the American Society for Mass Spectrometry 29 (3) (2018)
Matthew The, Fredrik Edfors, Yasset Perez Riverol, Samuel H Payne, Michael R Hoopmann, Magnus Palmblad, Björn Forsström, Lukas Käll
A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of proteome research 17 (5) (2018)
Yassene Mohammed, Bart J van Vlijmen, Juncong Yang, Andrew J Percy, Magnus Palmblad, Christoph H Borchers, Frits Richard Rosendaal
Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer. Blood advances 1 (15) (2017)
Magnus Palmblad, Vetle I Torvik
Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services. Tropical medicine and health 45 (2017)
Dmitrii Travin, Iaroslav Popov, Arzu Tugce Guler, Dmitry Medvedev, Suzanne van der Plas-Duivesteijn, Monica Varela, Iris C R M Kolder, Annemarie H Meijer, Herman P Spaink, Magnus Palmblad
COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. Journal of proteome research 17 (1) (2017)
Juan Antonio Vizcaino, Mathias Walzer, Rafael C Jimenez, Wout Bittremieux, David Bouyssié, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J R Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred Pühler, Veit Schwämmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek, Martin Eisenacher, Lennart Martens, Oliver Kohlbacher
A community proposal to integrate proteomics activities in ELIXIR. F1000Research 6 (2017)
Arzu Tugce Guler, Cathelijn J F Waaijer, Magnus Palmblad
Scientific workflows for bibliometrics. Scientometrics 107 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Magnus Palmblad