Prem P Chapagain (Prem Chapagain)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 59

Top Venues

The journal of physical chemistry. B

Journal of chemical information and modeling

bioRxiv : the preprint server for biology

Nucleic acids research

Florida International University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Florida International University

United States

Associate Professor :: Physics

Publications

Jan Sklenicka, Tung Tran, Maria Soledad Ramirez, Haley M Donow, Angel J Magaña, Travis LaVoi, Yasir Mamun, Veronica Jimenez, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Structure-Activity Relationship of Pyrrolidine Pentamine Derivatives as Inhibitors of the Aminoglycoside 6'- N -Acetyltransferase Type Ib. Antibiotics (Basel, Switzerland) 13 (7) (2024)
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem P Chapagain
Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations. Journal of chemical information and modeling (2024)
Jan Sklenicka, Tung Tran, Maria Soledad Ramirez, Haley M Donow, Angel J Magaña, Travis LaVoi, Yasir Mamun, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Structure-activity relationship of pyrrolidine pentamine derivatives as inhibitors of the aminoglycoside 6'- N -acetyltransferase type Ib. bioRxiv : the preprint server for biology (2024)
Yogesh Narkhede, Roopashi Saxena, Tej Sharma, Jacob P Conarty, Valentina Toro Ramirez, Balindile B Motsa, Souad Amiar, Sheng Li, Prem P Chapagain, Olaf Wiest, Robert V Stahelin
Computational and experimental identification of keystone interactions in Ebola virus matrix protein VP40 dimer formation. Protein science : a publication of the Protein Society 33 (5) (2024)
Balindile B Motsa, Tej Sharma, Prem P Chapagain, Robert V Stahelin
Minor changes in electrostatics robustly increase VP40 membrane binding, assembly, and budding of Ebola virus matrix protein derived virus-like particles. bioRxiv : the preprint server for biology (2024)
Balindile B Motsa, Tej Sharma, Prem P Chapagain, Robert V Stahelin
Minor changes in electrostatics robustly increase VP40 membrane binding, assembly, and budding of Ebola virus matrix protein derived virus-like particles. bioRxiv : the preprint server for biology (2024)
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem P Chapagain
Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations. Journal of chemical information and modeling 64 (15) (2024)
Yogesh Narkhede, Roopashi Saxena, Tej Sharma, Jacob P Conarty, Valentina Toro Ramirez, Balindile B Motsa, Souad Amiar, Sheng Li, Prem P Chapagain, Olaf Wiest, Robert V Stahelin
Computational and experimental identification of keystone interactions in Ebola virus matrix protein VP40 dimer formation. Protein science : a publication of the Protein Society 33 (5) (2024)
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem P Chapagain
Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations. Journal of chemical information and modeling 64 (15) (2024)
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem P Chapagain
Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations. Journal of chemical information and modeling 64 (15) (2024)
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem P Chapagain
Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations. Journal of chemical information and modeling 64 (15) (2024)
Jan Sklenicka, Tung Tran, Maria Soledad Ramirez, Haley M Donow, Angel J Magaña, Travis LaVoi, Yasir Mamun, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Structure-activity relationship of pyrrolidine pentamine derivatives as inhibitors of the aminoglycoside 6'- N -acetyltransferase type Ib. bioRxiv : the preprint server for biology (2024)
Jan Sklenicka, Tung Tran, Maria Soledad Ramirez, Haley M Donow, Angel J Magaña, Travis LaVoi, Yasir Mamun, Veronica Jimenez, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Structure-Activity Relationship of Pyrrolidine Pentamine Derivatives as Inhibitors of the Aminoglycoside 6'- N -Acetyltransferase Type Ib. Antibiotics (Basel, Switzerland) 13 (7) (2024)
Jan Sklenicka, Tung Tran, Maria Soledad Ramirez, Haley M Donow, Angel J Magaña, Travis LaVoi, Yasir Mamun, Veronica Jimenez, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Structure-Activity Relationship of Pyrrolidine Pentamine Derivatives as Inhibitors of the Aminoglycoside 6'- N -Acetyltransferase Type Ib. Antibiotics (Basel, Switzerland) 13 (7) (2024)
Jan Sklenicka, Tung Tran, Maria Soledad Ramirez, Haley M Donow, Angel J Magaña, Travis LaVoi, Yasir Mamun, Veronica Jimenez, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Structure-Activity Relationship of Pyrrolidine Pentamine Derivatives as Inhibitors of the Aminoglycoside 6'- N -Acetyltransferase Type Ib. Antibiotics (Basel, Switzerland) 13 (7) (2024)
Yogesh Narkhede, Roopashi Saxena, Tej Sharma, Jacob P Conarty, Valentina Toro Ramirez, Balindile B Motsa, Souad Amiar, Sheng Li, Prem P Chapagain, Olaf Wiest, Robert V Stahelin
Computational and experimental identification of keystone interactions in Ebola virus matrix protein VP40 dimer formation. Protein science : a publication of the Protein Society 33 (5) (2024)
Yasir Mamun, Yuk-Ching Tse-Dinh, Prem P Chapagain
Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations. Journal of chemical information and modeling 64 (15) (2024)
Balindile B Motsa, Tej Sharma, Prem P Chapagain, Robert V Stahelin
Minor changes in electrostatics robustly increase VP40 membrane binding, assembly, and budding of Ebola virus matrix protein derived virus-like particles. bioRxiv : the preprint server for biology (2024)
Balindile B Motsa, Tej Sharma, Prem P Chapagain, Robert V Stahelin
Minor changes in electrostatics robustly increase VP40 membrane binding, assembly, and budding of Ebola virus matrix protein derived virus-like particles. bioRxiv : the preprint server for biology (2024)
Yogesh B Narkhede, Atul Bhardwaj, Balindile B Motsa, Roopashi Saxena, Tej Sharma, Prem P Chapagain, Robert V Stahelin, Olaf G Wiest
Elucidating Residue-Level Determinants Affecting Dimerization of Ebola Virus Matrix Protein Using High-Throughput Site Saturation Mutagenesis and Biophysical Approaches. The journal of physical chemistry. B (2023)
Pawlos S Tsegay, Daniela Hernandez, Fei Qu, Mustapha Olatunji, Yasir Mamun, Prem P Chapagain, Yuan Liu
RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation. Nucleic acids research 51 (1) (2023)
Pawlos S Tsegay, Daniela Hernandez, Fei Qu, Mustapha Olatunji, Yasir Mamun, Prem P Chapagain, Yuan Liu
RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation. Nucleic acids research 51 (1) (2023)
Arti Vashist, Andrea D Raymond, Prem P Chapagain, Atul Vashist, Adriana Yndart Arias, Nagesh Kolishetti, Madhavan Nair
Multi-functional auto-fluorescent nanogels for theranostics. Journal of neurovirology (2023)
Pawlos S Tsegay, Daniela Hernandez, Fei Qu, Mustapha Olatunji, Yasir Mamun, Prem P Chapagain, Yuan Liu
RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation. Nucleic acids research 51 (1) (2023)
Timothy E Gressett, Md Lokman Hossen, Grant Talkington, Milla Volic, Hugo Perez, Purushottam B Tiwari, Prem P Chapagain, Gregory Bix
Molecular Interactions between Perlecan LG3 and the SARS-CoV-2 spike protein RBD. Protein science : a publication of the Protein Society (2023)
Angel J Magaña, Jan Sklenicka, Clemencia Pinilla, Marc Giulianotti, Prem P Chapagain, Radleigh Santos, Maria Soledad Ramirez, Marcelo E Tolmasky
Restoring susceptibility to aminoglycosides: identifying small molecule inhibitors of enzymatic inactivation. RSC medicinal chemistry 14 (9) (2023)
Pawlos S Tsegay, Daniela Hernandez, Fei Qu, Mustapha Olatunji, Yasir Mamun, Prem P Chapagain, Yuan Liu
RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation. Nucleic acids research 51 (1) (2023)
Tej Sharma, Bernard Gerstman, Prem P Chapagain
Distinctive Features of the XBB.1.5 and XBB.1.16 Spike Protein Receptor-Binding Domains and Their Roles in Conformational Changes and Angiotensin-Converting Enzyme 2 Binding. International journal of molecular sciences 24 (16) (2023)
Md Lokman Hossen, Prabin Baral, Tej Sharma, Bernard Gerstman, Prem P Chapagain
Significance of the RBD mutations in the SARS-CoV-2 omicron: from spike opening to antibody escape and cell attachment. Physical chemistry chemical physics : PCCP 24 (16) (2022)
Kevin Jeanne Dit Fouque, Sarah N Sipe, Alyssa Garabedian, German Mejia, Linjia Su, Md Lokman Hossen, Prem P Chapagain, Fenfei Leng, Jennifer S Brodbelt, Francisco Fernandez Lima
Exploring the Conformational and Binding Dynamics of HMGA2·DNA Complexes Using Trapped Ion Mobility Spectrometry-Mass Spectrometry. Journal of the American Society for Mass Spectrometry 33 (7) (2022)
Bidhya Thapa, Narayan P Adhikari, Purushottam B Tiwari, Prem P Chapagain
A 5'-Flanking C/G Pair at the Core Region Enhances the Recognition and Binding of Kaiso to Methylated DNA. Journal of chemical information and modeling (2022)
Alfonso Barrios, Mario Milan, Elianny Perozo, Md Lokman Hossen, Prem P Chapagain, Joong Ho Moon
Effects of sidechain isomerism on polymer-based non-covalent protein delivery. Chemical communications (Cambridge, England) 58 (59) (2022)
Srijit Mukherjee, Premashis Manna, Nancy Douglas, Prem P Chapagain, Ralph Jimenez
Conformational Dynamics of mCherry Variants: A Link between Side-Chain Motions and Fluorescence Brightness. The journal of physical chemistry. B 127 (1) (2022)
Eddy E Alfonso, Rogelio Troche, Zifang Deng, Thirunavukkarasu Annamalai, Prem P Chapagain, Yuk-Ching Tse-Dinh, Fenfei Leng
Potent Inhibition of Bacterial DNA Gyrase by Digallic Acid and Other Gallate Derivatives. ChemMedChem (2022)
Popular Pandey, Nisha Bhattarai, Linjia Su, Xuewen Wang, Fenfei Leng, Bernard S Gerstman, Prem P Chapagain, Jin He
Detecting Individual Proteins and Their Surface Charge Variations in Solution by the Potentiometric Nanoimpact Method. ACS sensors 7 (2) (2022)
Eddy E Alfonso, Zifang Deng, Daniel Boaretto, Becky L Hood, Stefan Vasile, Layton H Smith, Jeremy W Chambers, Prem P Chapagain, Fenfei Leng
Novel and Structurally Diversified Bacterial DNA Gyrase Inhibitors Discovered through a Fluorescence-Based High-Throughput Screening Assay. ACS pharmacology & translational science 5 (10) (2022)
Pawlos S Tsegay, Daniela Hernandez, Fei Qu, Mustapha Olatunji, Yasir Mamun, Prem P Chapagain, Yuan Liu
RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation. Nucleic acids research (2022)
Srijit Mukherjee, Premashis Manna, Nancy Douglas, Prem P Chapagain, Ralph Jimenez
Conformational Dynamics of mCherry Variants: A Link between Side-Chain Motions and Fluorescence Brightness. The journal of physical chemistry. B 127 (1) (2022)
Srijit Mukherjee, Premashis Manna, Nancy Douglas, Prem P Chapagain, Ralph Jimenez
Conformational Dynamics of mCherry Variants: A Link between Side-Chain Motions and Fluorescence Brightness. The journal of physical chemistry. B (2022)
Janelle Nunez-Castilla, Vitalii Stebliankin, Prabin Baral, Christian A Balbin, Masrur Sobhan, Trevor Cickovski, Ananda Mohan Mondal, Giri Narasimhan, Prem P Chapagain, Kalai Mathee, Jessica Siltberg-Liberles
Potential Autoimmunity Resulting from Molecular Mimicry between SARS-CoV-2 Spike and Human Proteins. Viruses 14 (7) (2022)
Srijit Mukherjee, Premashis Manna, Nancy Douglas, Prem P Chapagain, Ralph Jimenez
Conformational Dynamics of mCherry Variants: A Link between Side-Chain Motions and Fluorescence Brightness. The journal of physical chemistry. B 127 (1) (2022)
Rudramani Pokhrel, Rojesh Shakya, Prabin Baral, Prem P Chapagain
Molecular Modeling and Simulation of the Peptidoglycan Layer of Gram-Positive Bacteria <i>Staphylococcus aureus</i>. Journal of chemical information and modeling 62 (20) (2022)
Michael J Norris, Monica L Husby, William B Kiosses, Jieyun Yin, Roopashi Saxena, Linda J Rennick, Anja Heiner, Stephanie S Harkins, Rudramani Pokhrel, Sharon L Schendel, Kathryn M Hastie, Sara Landeras-Bueno, Zhe Li Salie, Benhur Lee, Prem P Chapagain, Andrea Maisner, W Paul Duprex, Robert V Stahelin, Erica Ollmann Saphire
Measles and Nipah virus assembly: Specific lipid binding drives matrix polymerization. Science advances 8 (29) (2022)
Rudramani Pokhrel, Nisha Bhattarai, Prabin Baral, Bernard S Gerstman, Jae H Park, Martin Handfield, Prem P Chapagain
Lipid II Binding and Transmembrane Properties of Various Antimicrobial Lanthipeptides. Journal of chemical theory and computation (2021)
Nisha Bhattarai, Prabin Baral, Bernard S Gerstman, Prem P Chapagain
Structural and Dynamical Differences in the Spike Protein RBD in the SARS-CoV-2 Variants B.1.1.7 and B.1.351. The journal of physical chemistry. B 125 (26) (2021)
Kristen A Johnson, Nisha Bhattarai, Melissa R Budicini, Carolyn M LaBonia, Sarah Catherine B Baker, Bernard S Gerstman, Prem P Chapagain, Robert V Stahelin
Cysteine Mutations in the Ebolavirus Matrix Protein VP40 Promote Phosphatidylserine Binding by Increasing the Flexibility of a Lipid-Binding Loop. Viruses 13 (7) (2021)
Kenneth Rocha, Jesus Magallon, Craig Reeves, Kimberly Phan, Peter Vu, Crista L Oakley-Havens, Stella Kwan, Maria Soledad Ramirez, Travis LaVoi, Haley Donow, Prem P Chapagain, Radleigh Santos, Clemencia Pinilla, Marc A Giulianotti, Marcelo E Tolmasky
Inhibition of Aminoglycoside 6'-N-acetyltransferase Type Ib (AAC(6')-Ib): Structure-Activity Relationship of Substituted Pyrrolidine Pentamine Derivatives as Inhibitors. Biomedicines 9 (9) (2021)
Rajendra P Koirala, Rudramani Pokhrel, Prabin Baral, Purushottam B Tiwari, Prem P Chapagain, Narayan Prasad Adhikari
Structural insights into the repair mechanism of AGT for methyl-induced DNA damage. Biological chemistry 402 (10) (2021)
Purushottam B Tiwari, Prem P Chapagain, Ahmed Seddek, Thirunavukkarasu Annamalai, Aykut Üren, Yuk-Ching Tse-Dinh
Covalent Complex of DNA and Bacterial Topoisomerase: Implications in Antibacterial Drug Development. ChemMedChem 15 (7) (2020)
Samiol Azam, Nisha Bhattarai, Adriana Riveron, Sasha Rodriguez, Prem P Chapagain, Jaroslava Miksovska
EF-hands in Neuronal Calcium Sensor Downstream Regulatory Element Antagonist Modulator Demonstrate Submillimolar Affinity for Li+: A New Prospect for Li+ Therapy. ACS chemical neuroscience 11 (17) (2020)
Kristen A Johnson, Rudramani Pokhrel, Melissa R Budicini, Bernard S Gerstman, Prem P Chapagain, Robert V Stahelin
A Conserved Tryptophan in the Ebola Virus Matrix Protein C-Terminal Domain Is Required for Efficient Virus-Like Particle Formation. Pathogens (Basel, Switzerland) 9 (5) (2020)
Rudramani Pokhrel, Nisha Bhattarai, Prabin Baral, Bernard S Gerstman, Jae H Park, Martin Handfield, Prem P Chapagain
Molecular mechanisms of pore formation and membrane disruption by the antimicrobial lantibiotic peptide Mutacin 1140. Physical chemistry chemical physics : PCCP 21 (23) (2019)
Elumalai Pavadai, Nisha Bhattarai, Prabin Baral, Robert V Stahelin, Prem P Chapagain, Bernard S Gerstman
Conformational Flexibility of the Protein-Protein Interfaces of the Ebola Virus VP40 Structural Matrix Filament. The journal of physical chemistry. B 123 (43) (2019)
Shayna Sandhaus, Prem P Chapagain, Yuk-Ching Tse-Dinh
Discovery of novel bacterial topoisomerase I inhibitors by use of in silico docking and in vitro assays. Scientific reports 8 (1) (2018)
Purushottam B Tiwari, Prem P Chapagain, Aykut Üren
Investigating molecular interactions between oxidized neuroglobin and cytochrome c. Scientific reports 8 (1) (2018)
Kathryn Del Vecchio, Cary T Frick, Jeevan B Gc, Shun-Ichiro Oda, Bernard S Gerstman, Erica Ollmann Saphire, Prem P Chapagain, Robert V Stahelin
A cationic, C-terminal patch and structural rearrangements in Ebola virus matrix VP40 protein control its interactions with phosphatidylserine. The Journal of biological chemistry 293 (9) (2018)
Rudramani Pokhrel, Bernard S Gerstman, Joshua D Hutcheson, Prem P Chapagain
In Silico Investigations of Calcium Phosphate Mineralization in Extracellular Vesicles. The journal of physical chemistry. B 122 (14) (2018)
David Butcher, Prem P Chapagain, Fenfei Leng, Francisco Fernandez Lima
Differentiating Parallel and Antiparallel DNA Duplexes in the Gas Phase Using Trapped Ion Mobility Spectrometry. The journal of physical chemistry. B 122 (27) (2018)
Elumalai Pavadai, Bernard S Gerstman, Prem P Chapagain
A cylindrical assembly model and dynamics of the Ebola virus VP40 structural matrix. Scientific reports 8 (1) (2018)

Prem P Chapagain.css-eqlu8i{font-size:small;padding-left:4px;} (Prem Chapagain)

Publication Activity (10 Years)

Top Topics

Top Venues

Prem P Chapagain (Prem Chapagain)