Francisco J Planes

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 19

Top Topics

Multiple Myeloma

Top Venues

Bioinformatics (Oxford, England)

NPJ systems biology and applications

Briefings in bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Francesco Balzerani, Telmo Blasco, Sergio Pérez-Burillo, Luis Vitores Valcárcel, Soha Hassoun, Francisco J Planes
Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota. NPJ systems biology and applications 10 (1) (2024)
Danel Olaverri, Luis Vitores Valcárcel, Naroa Barrena, Carlos J Rodríguez, Francisco J Planes
Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism. Briefings in bioinformatics 25 (3) (2024)
Telmo Blasco, Francesco Balzerani, Luis V Valcárcel, Pedro Larrañaga, Concha Bielza, María Pilar Francino, José Ángel Rufián-Henares, Francisco J Planes, Sergio Pérez-Burillo
BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities. Bioinformatics (Oxford, England) 40 (5) (2024)
Carlos J Rodriguez-Flores, Naroa Barrena, Danel Olaverri, Idoia Ochoa, Luis V Valcárcel, Francisco J Planes
gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python. Bioinformatics (Oxford, England) 40 (6) (2024)
Telmo Blasco, Francesco Balzerani, Luis V Valcárcel, Pedro Larrañaga, Concha Bielza, María Pilar Francino, José Ángel Rufián-Henares, Francisco J Planes, Sergio Pérez-Burillo
BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities. Bioinformatics (Oxford, England) 40 (5) (2024)
Telmo Blasco, Francesco Balzerani, Luis V Valcárcel, Pedro Larrañaga, Concha Bielza, María Pilar Francino, José Ángel Rufián-Henares, Francisco J Planes, Sergio Pérez-Burillo
BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities. Bioinformatics (Oxford, England) 40 (5) (2024)
Francesco Balzerani, Telmo Blasco, Sergio Pérez-Burillo, Luis Vitores Valcárcel, Soha Hassoun, Francisco J Planes
Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota. NPJ systems biology and applications 10 (1) (2024)
Francesco Balzerani, Telmo Blasco, Sergio Pérez-Burillo, Luis Vitores Valcárcel, Soha Hassoun, Francisco J Planes
Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota. NPJ systems biology and applications 10 (1) (2024)
Carlos J Rodriguez-Flores, Naroa Barrena, Danel Olaverri, Idoia Ochoa, Luis V Valcárcel, Francisco J Planes
gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python. Bioinformatics (Oxford, England) 40 (6) (2024)
Carlos J Rodriguez-Flores, Naroa Barrena, Danel Olaverri, Idoia Ochoa, Luis V Valcárcel, Francisco J Planes
gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python. Bioinformatics (Oxford, England) 40 (6) (2024)
Danel Olaverri, Luis Vitores Valcárcel, Naroa Barrena, Carlos J Rodríguez, Francisco J Planes
Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism. Briefings in bioinformatics 25 (3) (2024)
Danel Olaverri, Luis Vitores Valcárcel, Naroa Barrena, Carlos J Rodríguez, Francisco J Planes
Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism. Briefings in bioinformatics 25 (3) (2024)
Naroa Barrena, Luis V Valcárcel, Danel Olaverri, Iñigo Apaolaza, Francisco J Planes
Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells. NPJ systems biology and applications 9 (1) (2023)
Luis Vitores Valcárcel, Edurne San José-Enériz, Xabier Cendoya, Angel Rubio, Xabier Agirre, Felipe Prósper, Francisco J Planes
BOSO: A novel feature selection algorithm for linear regression with high-dimensional data. PLoS computational biology 18 (5) (2022)
Iñigo Apaolaza, Edurne San José-Enériz, Luis Vitores Valcárcel, Xabier Agirre, Felipe Prosper, Francisco J Planes
A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism. PLoS computational biology 18 (3) (2022)
Ana C Viñado, Isabel A Calvo, Itziar Cenzano, Danel Olaverri, Miguel Cocera, Patxi San Martin-Uriz, Juan P Romero, Amaia Vilas-Zornoza, Laura Vera, Nuria Gómez-Cebrián, Leonor Puchades-Carrasco, Livia E Lisi-Vega, Iñigo Apaolaza, Pablo Valera, Elisabeth Guruceaga, Froilán Granero-Moltó, Purificación Ripalda-Cemboráin, Tamara J Luck, Lars Bullinger, Francisco J Planes, José J Rifon, Simon Mendez-Ferrer, Rushdia Z Yusuf, Ana Pardo-Saganta, Felipe Prosper, Borja Saez
The bone marrow niche regulates redox and energy balance in MLL::AF9 leukemia stem cells. Leukemia 36 (8) (2022)
Francesco Balzerani, Daniel Hinojosa-Nogueira, Xabier Cendoya, Telmo Blasco, Sergio Pérez-Burillo, Iñigo Apaolaza, M Pilar Francino, José Ángel Rufián-Henares, Francisco J Planes
Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods. NPJ systems biology and applications 8 (1) (2022)
Luis Vitores Valcárcel, Ane Amundarain, Marta Kulis, Stella Charalampopoulou, Ari M Melnick, Jesús San F Miguel, José Ignacio Martin-Subero, Francisco J Planes, Xabier Agirre, Felipe Prosper
Gene expression derived from alternative promoters improves prognostic stratification in multiple myeloma. Leukemia 35 (10) (2021)
Telmo Blasco, Sergio Pérez-Burillo, Francesco Balzerani, Daniel Hinojosa-Nogueira, Alberto Lerma-Aguilera, Silvia Pastoriza, Xabier Cendoya, Ángel Rubio, María José Gosalbes, Nuria Jiménez-Hernández, María Pilar Francino, Iñigo Apaolaza, José Ángel Rufián-Henares, Francisco J Planes
An extended reconstruction of human gut microbiota metabolism of dietary compounds. Nature communications 12 (1) (2021)