Frank Koopmans (F Koopmans)

Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 33

Top Venues

Cells

Journal of proteome research

International journal of molecular sciences

Communications biology

Vrije Universiteit Amsterdam

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Vrije Universiteit Amsterdam May 01 2011

Netherlands

PhD :: Department of Functional Genomics & Department of Molecular and Cellular Neurobiology

Publications

Frank Koopmans
GOAT: efficient and robust identification of gene set enrichment. Communications biology 7 (1) (2024)
Frank Koopmans
GOAT: efficient and robust identification of gene set enrichment. Communications biology 7 (1) (2024)
Frank Koopmans
GOAT: efficient and robust identification of gene set enrichment. Communications biology 7 (1) (2024)
Evangelia Thanou, Frank Koopmans, Débora Pita-Illobre, Remco V Klaassen, Berna Özer, Ioannis Charalampopoulos, August B Smit, Ka Wan Li
Suspension TRAPping Filter (sTRAP) Sample Preparation for Quantitative Proteomics in the Low µg Input Range Using a Plasmid DNA Micro-Spin Column: Analysis of the Hippocampus from the 5xFAD Alzheimer's Disease Mouse Model. Cells 12 (9) (2023)
Miao Chen, Frank Koopmans, Iryna Paliukhovich, Sophie J F van der Spek, Jian Dong, August B Smit, Ka Wan Li
Blue Native PAGE-Antibody Shift in Conjunction with Mass Spectrometry to Reveal Protein Subcomplexes: Detection of a Cerebellar α1/α6-Subunits Containing γ-Aminobutyric Acid Type A Receptor Subtype. International journal of molecular sciences 24 (8) (2023)
Miao Chen, Frank Koopmans, Miguel A Gonzalez-Lozano, August B Smit, Ka Wan Li
Brain Region Differences in α1- and α5-Subunit-Containing GABA A Receptor Proteomes Revealed with Affinity Purification and Blue Native PAGE Proteomics. Cells 13 (1) (2023)
Miao Chen, Frank Koopmans, Miguel A Gonzalez-Lozano, August B Smit, Ka Wan Li
Brain Region Differences in α1- and α5-Subunit-Containing GABA A Receptor Proteomes Revealed with Affinity Purification and Blue Native PAGE Proteomics. Cells 13 (1) (2023)
Miao Chen, Frank Koopmans, Iryna Paliukhovich, Sophie J F van der Spek, Jian Dong, August B Smit, Ka Wan Li
Blue Native PAGE-Antibody Shift in Conjunction with Mass Spectrometry to Reveal Protein Subcomplexes: Detection of a Cerebellar α1/α6-Subunits Containing γ-Aminobutyric Acid Type A Receptor Subtype. International journal of molecular sciences 24 (8) (2023)
Evangelia Thanou, Frank Koopmans, Débora Pita-Illobre, Remco V Klaassen, Berna Özer, Ioannis Charalampopoulos, August B Smit, Ka Wan Li
Suspension TRAPping Filter (sTRAP) Sample Preparation for Quantitative Proteomics in the Low µg Input Range Using a Plasmid DNA Micro-Spin Column: Analysis of the Hippocampus from the 5xFAD Alzheimer's Disease Mouse Model. Cells 12 (9) (2023)
Evangelia Thanou, Frank Koopmans, Débora Pita-Illobre, Remco V Klaassen, Berna Özer, Ioannis Charalampopoulos, August B Smit, Ka Wan Li
Suspension TRAPping Filter (sTRAP) Sample Preparation for Quantitative Proteomics in the Low µg Input Range Using a Plasmid DNA Micro-Spin Column: Analysis of the Hippocampus from the 5xFAD Alzheimer's Disease Mouse Model. Cells 12 (9) (2023)
Miao Chen, Frank Koopmans, Iryna Paliukhovich, Sophie J F van der Spek, Jian Dong, August B Smit, Ka Wan Li
Blue Native PAGE-Antibody Shift in Conjunction with Mass Spectrometry to Reveal Protein Subcomplexes: Detection of a Cerebellar α1/α6-Subunits Containing γ-Aminobutyric Acid Type A Receptor Subtype. International journal of molecular sciences 24 (8) (2023)
Miao Chen, Frank Koopmans, Miguel A Gonzalez-Lozano, August B Smit, Ka Wan Li
Brain Region Differences in α1- and α5-Subunit-Containing GABA A Receptor Proteomes Revealed with Affinity Purification and Blue Native PAGE Proteomics. Cells 13 (1) (2023)
Miao Chen, Frank Koopmans, Miguel A Gonzalez-Lozano, August B Smit, Ka Wan Li
Brain Region Differences in α1- and α5-Subunit-Containing GABA A Receptor Proteomes Revealed with Affinity Purification and Blue Native PAGE Proteomics. Cells 13 (1) (2023)
Miao Chen, Frank Koopmans, Iryna Paliukhovich, Sophie J F van der Spek, Jian Dong, August B Smit, Ka Wan Li
Blue Native PAGE-Antibody Shift in Conjunction with Mass Spectrometry to Reveal Protein Subcomplexes: Detection of a Cerebellar α1/α6-Subunits Containing γ-Aminobutyric Acid Type A Receptor Subtype. International journal of molecular sciences 24 (8) (2023)
Frank Koopmans, Ka Wan Li, Remco V Klaassen, August B Smit
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data. Journal of proteome research 22 (2) (2022)
Jessie W Brunner, Hanna C A Lammertse, Annemiek A van Berkel, Frank Koopmans, Ka Wan Li, August B Smit, Ruud F Toonen, Matthijs Verhage, Sophie van der Sluis
Power and optimal study design in iPSC-based brain disease modelling. Molecular psychiatry (2022)
Simon A Hardwick, Wen Hu, Anoushka Joglekar, Li Fan, Paul G Collier, Careen Foord, Jennifer Balacco, Samantha N Lanjewar, Maureen McGuirk Sampson, Frank Koopmans, Andrey D Prjibelski, Alla Mikheenko, Natan Belchikov, Julien Jarroux, Anne Bergstrom Lucas, Miklos Palkovits, Wenjie Luo, Teresa A Milner, Lishomwa C Ndhlovu, August B Smit, John Q Trojanowski, Virginia M Y Lee, Olivier Fedrigo, Steven A Sloan, Dóra Tombácz, Margaret Elizabeth Ross, Erich D Jarvis, Zsolt Boldogkői, Li Gan, Hagen U Tilgner
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue. Nature biotechnology 40 (7) (2022)
Frank Koopmans, Ka Wan Li, Remco V Klaassen, August B Smit
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data. Journal of proteome research 22 (2) (2022)
Frank Koopmans, Ka Wan Li, Remco V Klaassen, August B Smit
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data. Journal of proteome research 22 (2) (2022)
Frank Koopmans, Ka Wan Li, Remco V Klaassen, August B Smit
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data. Journal of proteome research 22 (2) (2022)
A A Van Berkel, Frank Koopmans, Miguel A Gonzalez-Lozano, H C A Lammertse, Femke M Feringa, J Bryois, P F Sullivan, A B Smit, Ruud F G Toonen, M Verhage
Dysregulation of synaptic and developmental transcriptomic/proteomic profiles upon depletion of MUNC18-1. eNeuro (2022)
Frank Koopmans, Ka Wan Li, Remco V Klaassen, August B Smit
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data. Journal of proteome research (2022)
Sophie J F van der Spek, Nikhil J Pandya, Frank Koopmans, Iryna Paliukhovich, Roel C van der Schors, Mylene Otten, August B Smit, Ka Wan Li
Expression and Interaction Proteomics of GluA1- and GluA3-Subunit-Containing AMPARs Reveal Distinct Protein Composition. Cells 11 (22) (2022)
Frank Koopmans, Ka Wan Li, Remco V Klaassen, August B Smit
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data. Journal of proteome research 22 (2) (2022)
Sophie J F van der Spek, Miguel A Gonzalez-Lozano, Frank Koopmans, Suzanne S M Miedema, Iryna Paliukhovich, August B Smit, Ka Wan Li
Age-Dependent Hippocampal Proteomics in the APP/PS1 Alzheimer Mouse Model: A Comparative Analysis with Classical SWATH/DIA and directDIA Approaches. Cells 10 (7) (2021)
Marion Bonneau, Shane T O' Sullivan, Miguel A Gonzalez-Lozano, Paul Baxter, Phillippe Gautier, Elena Marchisella, Neil R Hardingham, Robert A Chesters, Helen Torrance, Andrew M McIntosh, Maurits A Jansen, Melanie McMillan, Yasmin Singh, Michel Didier, Frank Koopmans, Colin A Semple, Andrew M McIntosh, Hansjürgen Volkmer, Maarten Loos, Kevin Fox, Giles E Hardingham, Anthony Christopher Vernon, David J Porteous, August B Smit, David J Price, J Kirsty Millar
Functional brain defects in a mouse model of a chromosomal t(1;11) translocation that disrupts DISC1 and confers increased risk of psychiatric illness. Translational psychiatry 11 (1) (2021)
Sophie J F van der Spek, Frank Koopmans, Iryna Paliukhovich, Sarah L Ramsden, Kirsten Harvey, Robert J Harvey, August B Smit, Ka Wan Li
Glycine Receptor Complex Analysis Using Immunoprecipitation-Blue Native Gel Electrophoresis-Mass Spectrometry. Proteomics 20 (3-4) (2020)
Haram Park, Yeonsoo Choi, Hwajin Jung, Seoyeong Kim, Suho Lee, Hyemin Han, Hanseul Kweon, Suwon Kang, Woong Seob Sim, Frank Koopmans, Esther Yang, Hyun Kim, August B Smit, Yong Chul Bae, Eunjoon Kim
Splice-dependent trans-synaptic PTPδ-IL1RAPL1 interaction regulates synapse formation and non-REM sleep. The EMBO journal 39 (11) (2020)
Miguel A Gonzalez-Lozano, Frank Koopmans, Patrick F Sullivan, Jonas Protze, G Krause, M Verhage, Ka Wan Li, Fan Liu, August B Smit
Stitching the synapse: Cross-linking mass spectrometry into resolving synaptic protein interactions. Science advances 6 (8) (2020)
Frank Koopmans, Jenny T C Ho, August B Smit, Ka Wan Li
Comparative Analyses of Data Independent Acquisition Mass Spectrometric Approaches: DIA, WiSIM-DIA, and Untargeted DIA. Proteomics 18 (1) (2019)
Marinka Brouwer, Fatima Farzana, Frank Koopmans, Ning Chen, Jessie W Brunner, Silvia Oldani, Ka Wan Li, Jan Rt van Weering, August B Smit, Ruud F G Toonen, Matthijs Verhage
SALM1 controls synapse development by promoting F-actin/PIP2-dependent Neurexin clustering. The EMBO journal 38 (17) (2019)
Ishaan Gupta, Paul G Collier, Bettina Haase, Ahmed Mahfouz, Anoushka Joglekar, Taylor Floyd, Frank Koopmans, Ben Barres, August B Smit, Steven A Sloan, Wenjie Luo, Olivier Fedrigo, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells. Nature biotechnology (2018)
Nikhil J Pandya, Frank Koopmans, Johan A Slotman, Iryna Paliukhovich, Adriaan B Houtsmuller, August B Smit, Ka Wan Li
Correlation profiling of brain sub-cellular proteomes reveals co-assembly of synaptic proteins and subcellular distribution. Scientific reports 7 (1) (2017)

Frank Koopmans.css-eqlu8i{font-size:small;padding-left:4px;} (F Koopmans)

Publication Activity (10 Years)

Top Topics

Top Venues

Frank Koopmans (F Koopmans)