Ahmed Mahfouz (A Mahfouz)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 30

Top Venues

NAR genomics and bioinformatics

Journal of neuroendocrinology

Bioinformatics advances

The European journal of neuroscience

Delft University of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Delft University of Technology Oct 17 2010 - Jun 23 2016

Netherlands

PHD :: Faculty of Electrical Engineering, Mathematics, and Computer Science

Nile University Oct 01 2008 - Jul 01 2010

Egypt

MSC :: Communication and Information Technology

Publications

Jari B Berkhout, D Poormoghadam, Chun-Xia Yi, Andries Kalsbeek, Onno C Meijer, Ahmed Mahfouz
An integrated single-cell RNA-seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types. Journal of neuroendocrinology 36 (2) (2024)
Jari B Berkhout, D Poormoghadam, Chun-Xia Yi, Andries Kalsbeek, Onno C Meijer, Ahmed Mahfouz
An integrated single-cell RNA-seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types. Journal of neuroendocrinology (2024)
Jari B Berkhout, D Poormoghadam, Chun-Xia Yi, Andries Kalsbeek, Onno C Meijer, Ahmed Mahfouz
An integrated single-cell RNA-seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types. Journal of neuroendocrinology 36 (2) (2024)
Joana B Nunes, Marieke E Ijsselsteijn, Tamim Abdelaal, Rick Ursem, Manon van der Ploeg, Martin A Giera, Bart Everts, Ahmed Mahfouz, Bram Heijs, Noel F C C de Miranda
Integration of mass cytometry and mass spectrometry imaging for spatially resolved single-cell metabolic profiling. Nature methods (2024)
Tamim Abdelaal, Laurens M Grossouw, Ronald Jeroen Pasterkamp, Boudewijn P F Lelieveldt, Marcel J T Reinders, Ahmed Mahfouz
SIRV: spatial inference of RNA velocity at the single-cell resolution. NAR genomics and bioinformatics 6 (3) (2024)
Jari B Berkhout, D Poormoghadam, Chun-Xia Yi, Andries Kalsbeek, Onno C Meijer, Ahmed Mahfouz
An integrated single-cell RNA-seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types. Journal of neuroendocrinology 36 (2) (2024)
Tamim Abdelaal, Laurens M Grossouw, Ronald Jeroen Pasterkamp, Boudewijn P F Lelieveldt, Marcel J T Reinders, Ahmed Mahfouz
SIRV: spatial inference of RNA velocity at the single-cell resolution. NAR genomics and bioinformatics 6 (3) (2024)
Lieke Michielsen, Mohammad Lotfollahi, Daniel Strobl, Lisa Sikkema, Marcel J T Reinders, Fabian Joachim Theis, Ahmed Mahfouz
Single-cell reference mapping to construct and extend cell-type hierarchies. NAR genomics and bioinformatics 5 (3) (2023)
Laura G M Heezen, Tamim Abdelaal, M van Putten, Annemieke M Aartsma-Rus, Ahmed Mahfouz, Pietro Spitali
Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models. Nature communications 14 (1) (2023)
Akash Singh, Kirti Biharie, Marcel J T Reinders, Ahmed Mahfouz, Tamim Abdelaal
scTopoGAN: unsupervised manifold alignment of single-cell data. Bioinformatics advances 3 (1) (2023)
Kirti Biharie, Lieke Michielsen, Marcel J T Reinders, Ahmed Mahfouz
Cell type matching across species using protein embeddings and transfer learning. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Mostafa Eltager, Tamim Abdelaal, Ahmed Mahfouz, Marcel J T Reinders
scMoC: single-cell multi-omics clustering. Bioinformatics advances 2 (1) (2022)
Mostafa Eltager, Tamim Abdelaal, Ahmed Mahfouz, Marcel J T Reinders
scMoC: single-cell multi-omics clustering. Bioinformatics advances 2 (1) (2022)
Gangqi Wang, Bram Heijs, Sarantos Kostidis, Ahmed Mahfouz, Rosalie G J Rietjens, Roel Bijkerk, Angela Koudijs, Loïs A K van der Pluijm, Cathelijne W van den Berg, Sébastien J Dumas, Peter Carmeliet, Martin A Giera, Bernard M van den Berg, Ton J Rabelink
Analyzing cell-type-specific dynamics of metabolism in kidney repair. Nature metabolism 4 (9) (2022)
Dana L E Vergoossen, Arlin Keo, Ahmed Mahfouz, Maartje G Huijbers
Timing and localization of myasthenia gravis-related gene expression. The European journal of neuroscience 54 (4) (2021)
Florencia Morgana, Rianne Opstelten, Manon C Slot, Andrew M Scott, René A W van Lier, Bianca Blom, Ahmed Mahfouz, Derk Amsen
Single-Cell Transcriptomics Reveals Discrete Steps in Regulatory T Cell Development in the Human Thymus. Journal of immunology (Baltimore, Md. : 1950) 208 (2) (2021)
Lieke Michielsen, Marcel J T Reinders, Ahmed Mahfouz
Hierarchical progressive learning of cell identities in single-cell data. Nature communications 12 (1) (2021)
Gerard A Bouland, Ahmed Mahfouz, Marcel J T Reinders
Differential analysis of binarized single-cell RNA sequencing data captures biological variation. NAR genomics and bioinformatics 3 (4) (2021)
Nathalie Groen, Floris Leenders, Ahmed Mahfouz, Amadeo Muñoz Garcia, Mauro J Muraro, Natascha de Graaf, Ton J Rabelink, Wytske M van Weerden, Alexander van Oudenaarden, Arnaud Zaldumbide, Marcel J T Reinders, Eelco J P de Koning, Francoise Carlotti
Single-Cell Transcriptomics Links Loss of Human Pancreatic β-Cell Identity to ER Stress. Cells 10 (12) (2021)
Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Anne Hafkemeijer, Wilma D J Van de Berg, Jacobus J van Hilten, Marcel J T Reinders, Ahmed Mahfouz
Cingulate networks associated with gray matter loss in Parkinson's disease show high expression of cholinergic genes in the healthy brain. The European journal of neuroscience 53 (11) (2021)
Mohammed Charrout, Marcel J T Reinders, Ahmed Mahfouz
Untangling biological factors influencing trajectory inference from single cell data. NAR genomics and bioinformatics 2 (3) (2020)
Alex N Salazar, Franklin L Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E McKenzie, Teunke van Rossum, Stan J J Brouns, Thomas Abeel
An educational guide for nanopore sequencing in the classroom. PLoS computational biology 16 (1) (2020)
Arlin Keo, Ahmed Mahfouz, Angela M T Ingrassia, Jean-Pascal Meneboo, Celine Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P F Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D J Van de Berg, Jacobus J van Hilten, Marcel J T Reinders
Transcriptomic signatures of brain regional vulnerability to Parkinson's disease. Communications biology 3 (1) (2020)
Monique G P van der Wijst, D H de Vries, Hilde E Groot, Gosia Trynka, C C Hon, Marc Jan Bonder, O Stegle, Martijn C Nawijn, Youssef Idaghdour, Pim van der Harst, C J Ye, J Powell, Fabian Joachim Theis, Ahmed Mahfouz, Matthias Heinig, Lude H Franke
The single-cell eQTLGen consortium. eLife 9 (2020)
Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J T Reinders, Ahmed Mahfouz
A comparison of automatic cell identification methods for single-cell RNA sequencing data. Genome biology 20 (1) (2019)
Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram Kaliyaperumal, Peter A C T' Hoen, Jos G M Hendriksen, Annemieke M Aartsma-Rus, Jan J G M Verschuuren, Erik H Niks, Marcel J T Reinders, Hermien E Kan, Boudewijn P F Lelieveldt
Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy. Scientific reports 8 (1) (2018)
Ishaan Gupta, Paul G Collier, Bettina Haase, Ahmed Mahfouz, Anoushka Joglekar, Taylor Floyd, Frank Koopmans, Ben Barres, August B Smit, Steven A Sloan, Wenjie Luo, Olivier Fedrigo, Margaret Elizabeth Ross, Hagen U Tilgner
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells. Nature biotechnology (2018)
Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram Kaliyaperumal, Peter A C T' Hoen, Jos G M Hendriksen, Annemieke M Aartsma-Rus, Jan J G M Verschuuren, Erik H Niks, Marcel J T Reinders, Hermien E Kan, Boudewijn P F Lelieveldt
Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy. Scientific reports 7 (1) (2017)
Ahmed Mahfouz, Sjoerd M H Huisman, Boudewijn P F Lelieveldt, Marcel J T Reinders
Brain transcriptome atlases: a computational perspective. Brain structure & function 222 (4) (2016)
Ahmed Mahfouz, Boudewijn P F Lelieveldt, Aldo Grefhorst, Lisa T C M van Weert, Isabel M Mol, Hetty C M Sips, José K van den Heuvel, Nicole A Datson, Jenny A Visser, Marcel J T Reinders, Onno C Meijer
Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions. Proceedings of the National Academy of Sciences of the United States of America 113 (10) (2016)

Ahmed Mahfouz.css-eqlu8i{font-size:small;padding-left:4px;} (A Mahfouz)

Publication Activity (10 Years)

Top Topics

Top Venues

Ahmed Mahfouz (A Mahfouz)