Frederic Lemoine (F Lemoine, Frédéric Lemoine)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 25

Top Topics

Respiratory Syndrome Coronavirus

Top Venues

Nature communications

NAR genomics and bioinformatics

Nature microbiology

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Marie Morel, Anna Zhukova, Frederic Lemoine, Olivier Gascuel
Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor. Genome biology and evolution 16 (4) (2024)
Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frederic Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo P C Rocha, Didier Mazel
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites. Nature microbiology 9 (1) (2024)
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Françoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, Léa Avon, William Henry Bolland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion. Nature communications 15 (1) (2024)
Marie Morel, Anna Zhukova, Frederic Lemoine, Olivier Gascuel
Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor. Genome biology and evolution 16 (4) (2024)
George Marchment, Bryan Brancotte, Marie Schmit, Frederic Lemoine, Sarah Cohen-Boulakia
BioFlow-Insight: facilitating reuse of Nextflow workflows with structure reconstruction and visualization. NAR genomics and bioinformatics 6 (3) (2024)
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Françoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, Léa Avon, William Henry Bolland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion. Nature communications 15 (1) (2024)
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Françoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, Léa Avon, William Henry Bolland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion. Nature communications 15 (1) (2024)
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Françoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, Léa Avon, William Henry Bolland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion. Nature communications 15 (1) (2024)
Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frederic Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo P C Rocha, Didier Mazel
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites. Nature microbiology 9 (1) (2024)
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Françoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, Léa Avon, William Henry Bolland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion. Nature communications 15 (1) (2024)
George Marchment, Bryan Brancotte, Marie Schmit, Frederic Lemoine, Sarah Cohen-Boulakia
BioFlow-Insight: facilitating reuse of Nextflow workflows with structure reconstruction and visualization. NAR genomics and bioinformatics 6 (3) (2024)
Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frederic Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo P C Rocha, Didier Mazel
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites. Nature microbiology (2024)
Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frederic Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo P C Rocha, Didier Mazel
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites. Nature microbiology 9 (1) (2024)
Paul Zaharias, Frederic Lemoine, Olivier Gascuel
Robustness of Felsenstein's Versus Transfer Bootstrap Supports With Respect to Taxon Sampling. Systematic biology (2023)
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Francoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, William Henry Boland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86 lineages combining increased fitness and antibody evasion. bioRxiv : the preprint server for biology (2023)
Hugo Caro, Sulyvan Dollin, Anne Biton, Bryan Brancotte, Dimitri Desvillechabrol, Yoann Dufresne, Blaise Li, Etienne Kornobis, Frederic Lemoine, Nicolas Maillet, Amandine Perrin, Nicolas Traut, Bertrand Néron, Thomas Cokelaer
BioConvert: a comprehensive format converter for life sciences. NAR genomics and bioinformatics 5 (3) (2023)
Rodolphe Suspène, Kyle A Raymond, Laetitia Boutin, Sophie Guillier, Frederic Lemoine, Olivier Ferraris, Jean-Nicolas Tournier, Frédéric Iseni, Etienne Simon-Lorière, Jean-Pierre Vartanian
APOBEC3F is a mutational driver of the human Monkeypox virus identified in the 2022 outbreak. The Journal of infectious diseases (2023)
Thomas Cokelaer, Sarah Cohen-Boulakia, Frederic Lemoine
Reprohackathons: promoting reproducibility in bioinformatics through training. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
J Voznica, A Zhukova, V Boskova, E Saulnier, Frederic Lemoine, M Moslonka-Lefebvre, Olivier Gascuel
Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks. Nature communications 13 (1) (2022)
Samir Amrane, Chloé Jaubert, Amina Bedrat, Tiffany Rundstadler, Patricia Recordon-Pinson, Cindy Aknin, Aurore Guédin, Aurore De Rache, Laura Bartolucci, Ibra Diene, Frederic Lemoine, Olivier Gascuel, Geneviève Pratviel, Jean-Louis Mergny, Marie-Line Andreola
Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection. Nucleic acids research (2022)
Frederic Lemoine, Olivier Gascuel
Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows. NAR genomics and bioinformatics 3 (3) (2021)
Frederic Lemoine, Olivier Gascuel
Correction to 'Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows'. NAR genomics and bioinformatics 3 (3) (2021)
Frederic Lemoine, Luc Blassel, Jakub Voznica, Olivier Gascuel
COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM. Bioinformatics (Oxford, England) 37 (12) (2021)
Delphine Planas, Nell Saunders, Piet Maes, Florence Guivel-Benhassine, Cyril Planchais, Julian Buchrieser, William-Henry Bolland, Françoise Porrot, Isabelle Staropoli, Frederic Lemoine, Hélène Péré, David Veyer, Julien Puech, Julien Rodary, Guy Baele, Simon Dellicour, Joren Raymenants, Sarah Gorissen, Caspar Geenen, Bert Vanmechelen, Tony Wawina-Bokalanga, Joan Martí-Carreras, Lize Cuypers, Aymeric Sève, Laurent Hocqueloux, Thierry Prazuck, Felix A Rey, Etienne Simon-Loriere, Timothee Bruel, Hugo Mouquet, Emmanuel André, Olivier Schwartz
Considerable escape of SARS-CoV-2 Omicron to antibody neutralization. Nature 602 (7898) (2021)
Brittany Rife Magalis, Andrea Ramirez-Mata, Anna Zhukova, Carla N Mavian, Simone Marini, Frederic Lemoine, Mattia Prosperi, Olivier Gascuel, Marco Salemi
Differing impacts of global and regional responses on SARS-CoV-2 transmission cluster dynamics. bioRxiv : the preprint server for biology (2020)