Guy Baele (G Baele)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 63

Top Topics

Hepatitis B Virus

Nursing Students

Top Venues

Virus evolution

medRxiv : the preprint server for health sciences

Nature communications

Molecular biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Yimin Li, Nena Bollen, Samuel Leandro Hong, Marius Brusselmans, Fabiana Gambaro, Marc A Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv : the preprint server for health sciences (2024)
Andrew F Magee, Andrew J Holbrook, Jonathan E Pekar, Itzue W Caviedes-Solis, Fredrick A Matsen Iv, Guy Baele, Joel O Wertheim, Xiang Ji, Philippe Lemey, Marc A Suchard
Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic biology (2024)
Yimin Li, Nena Bollen, Samuel Leandro Hong, Marius Brusselmans, Fabiana Gambaro, Marc A Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv : the preprint server for health sciences (2024)
Barney I Potter, Marijn Thijssen, Nídia Sequeira Trovão, Andrea Pineda-Peña, Marijke Reynders, Thomas Mina, Carolina Alvarez, Samad Amini-Bavil-Olyaee, Frederik Nevens, Piet Maes, Philippe Lemey, Marc Van Ranst, Guy Baele, Mahmoud Reza Pourkarim
Contemporary and historical human migration patterns shape hepatitis B virus diversity. Virus evolution 10 (1) (2024)
Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A Matsen, Marc A Suchard
Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics (Oxford, England) 40 (2) (2024)
Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A Matsen, Marc A Suchard
Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics (Oxford, England) 40 (2) (2024)
Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A Matsen, Marc A Suchard
Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics (Oxford, England) 40 (2) (2024)
Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A Matsen, Marc A Suchard
Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics (Oxford, England) 40 (2) (2024)
Yan-Kuo Sun, Jiabao Xing, Sijia Xu, Yue Li, Jianhao Zhong, Han Gao, Song Cheng, Jun Dong, Tianyou Zhang, Gang Lu, Guy Baele, Gui-Hong Zhang
Demographic and zoological drivers of infectome diversity in companion cats with ascites. mSystems (2024)
Lester Josue Pérez, Guy Baele, Samuel Leandro Hong, Gavin A Cloherty, Michael G Berg
Ecological Changes Exacerbating the Spread of Invasive Ticks has Driven the Dispersal of Severe Fever with Thrombocytopenia Syndrome Virus Throughout Southeast Asia. Molecular biology and evolution 41 (8) (2024)
Andrew F Magee, Andrew J Holbrook, Jonathan E Pekar, Itzue W Caviedes-Solis, Fredrick A Matsen Iv, Guy Baele, Joel O Wertheim, Xiang Ji, Philippe Lemey, Marc A Suchard
Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic biology (2024)
Lester Josue Pérez, Guy Baele, Samuel Leandro Hong, Gavin A Cloherty, Michael G Berg
Ecological Changes Exacerbating the Spread of Invasive Ticks has Driven the Dispersal of Severe Fever with Thrombocytopenia Syndrome Virus Throughout Southeast Asia. Molecular biology and evolution 41 (8) (2024)
Pilar Gallego-García, Nuria Estévez-Gómez, Loretta De Chiara, Pilar Alvariño, Pedro M Juiz-González, Isabel Torres-Beceiro, Margarita Poza, Juan A Vallejo, Soraya Rumbo-Feal, Kelly Conde-Pérez, Pablo Aja-Macaya, Susana Ladra, Antonio Moreno-Flores, María J Gude-González, Amparo Coira, Antonio Aguilera, José J Costa-Alcalde, Rocío Trastoy, Gema Barbeito-Castiñeiras, Daniel Garcia Souto, Jose M C Tubio, Matilde Trigo-Daporta, Pablo Camacho-Zamora, Juan García Costa, María González-Domínguez, Luis Canoura-Fernández, Daniel Glez-Peña, Sonia Pérez-Castro, Jorge Julio Cabrera-Alvargonzalez, Carlos Davina-Nunez, Montserrat Godoy-Diz, Ana Belén Treinta-Álvarez, Maria Isabel Veiga, João Carlos Sousa, Nuno S Osório, Iñaki Comas, Fernando Gonzáles-Candelas, Samuel Leandro Hong, Nena Bollen, Simon Dellicour, Guy Baele, Marc A Suchard, Philippe Lemey, Andrés Agulla, Germán Bou, Pilar Alonso-García, María Luisa Pérez-Del-Molino, Marta García-Campello, Isabel Paz-Vidal, Benito Regueiro, David Posada
Dispersal history of SARS-CoV-2 in Galicia, Spain. medRxiv : the preprint server for health sciences (2024)
Pilar Gallego-García, Nuria Estévez-Gómez, Loretta De Chiara, Pilar Alvariño, Pedro M Juiz-González, Isabel Torres-Beceiro, Margarita Poza, Juan A Vallejo, Soraya Rumbo-Feal, Kelly Conde-Pérez, Pablo Aja-Macaya, Susana Ladra, Antonio Moreno-Flores, María J Gude-González, Amparo Coira, Antonio Aguilera, José J Costa-Alcalde, Rocío Trastoy, Gema Barbeito-Castiñeiras, Daniel Garcia Souto, Jose M C Tubio, Matilde Trigo-Daporta, Pablo Camacho-Zamora, Juan García Costa, María González-Domínguez, Luis Canoura-Fernández, Daniel Glez-Peña, Sonia Pérez-Castro, Jorge Julio Cabrera-Alvargonzalez, Carlos Davina-Nunez, Montserrat Godoy-Diz, Ana Belén Treinta-Álvarez, Maria Isabel Veiga, João Carlos Sousa, Nuno S Osório, Iñaki Comas, Fernando Gonzáles-Candelas, Samuel Leandro Hong, Nena Bollen, Simon Dellicour, Guy Baele, Marc A Suchard, Philippe Lemey, Andrés Agulla, Germán Bou, Pilar Alonso-García, María Luisa Pérez-Del-Molino, Marta García-Campello, Isabel Paz-Vidal, Benito Regueiro, David Posada
Dispersal history of SARS-CoV-2 in Galicia, Spain. medRxiv : the preprint server for health sciences (2024)
Andrew F Magee, Andrew J Holbrook, Jonathan E Pekar, Itzue W Caviedes-Solis, Fredrick A Matsen Iv, Guy Baele, Joel O Wertheim, Xiang Ji, Philippe Lemey, Marc A Suchard
Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic biology (2024)
Barney I Potter, Marijn Thijssen, Nídia Sequeira Trovão, Andrea Pineda-Peña, Marijke Reynders, Thomas Mina, Carolina Alvarez, Samad Amini-Bavil-Olyaee, Frederik Nevens, Piet Maes, Philippe Lemey, Marc Van Ranst, Guy Baele, Mahmoud Reza Pourkarim
Contemporary and historical human migration patterns shape hepatitis B virus diversity. Virus evolution 10 (1) (2024)
Barney I Potter, Marijn Thijssen, Nídia Sequeira Trovão, Andrea Pineda-Peña, Marijke Reynders, Thomas Mina, Carolina Alvarez, Samad Amini-Bavil-Olyaee, Frederik Nevens, Piet Maes, Philippe Lemey, Marc Van Ranst, Guy Baele, Mahmoud Reza Pourkarim
Contemporary and historical human migration patterns shape hepatitis B virus diversity. Virus evolution 10 (1) (2024)
Pilar Gallego-García, Nuria Estévez-Gómez, Loretta De Chiara, Pilar Alvariño, Pedro M Juiz-González, Isabel Torres-Beceiro, Margarita Poza, Juan A Vallejo, Soraya Rumbo-Feal, Kelly Conde-Pérez, Pablo Aja-Macaya, Susana Ladra, Antonio Moreno-Flores, María J Gude-González, Amparo Coira, Antonio Aguilera, José J Costa-Alcalde, Rocío Trastoy, Gema Barbeito-Castiñeiras, Daniel Garcia Souto, Jose M C Tubio, Matilde Trigo-Daporta, Pablo Camacho-Zamora, Juan García Costa, María González-Domínguez, Luis Canoura-Fernández, Daniel Glez-Peña, Sonia Pérez-Castro, Jorge Julio Cabrera-Alvargonzalez, Carlos Davina-Nunez, Montserrat Godoy-Diz, Ana Belén Treinta-Álvarez, Maria Isabel Veiga, João Carlos Sousa, Nuno S Osório, Iñaki Comas, Fernando Gonzáles-Candelas, Samuel Leandro Hong, Nena Bollen, Simon Dellicour, Guy Baele, Marc A Suchard, Philippe Lemey, Andrés Agulla, Germán Bou, Pilar Alonso-García, María Luisa Pérez-Del-Molino, Marta García-Campello, Isabel Paz-Vidal, Benito Regueiro, David Posada
Dispersal history of SARS-CoV-2 in Galicia, Spain. medRxiv : the preprint server for health sciences (2024)
Yimin Li, Nena Bollen, Samuel Leandro Hong, Marius Brusselmans, Fabiana Gambaro, Marc A Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv : the preprint server for health sciences (2024)
John H Tay, Guy Baele, Sebastián Duchêne
Detecting episodic evolution through Bayesian inference of molecular clock models. Molecular biology and evolution (2023)
Xiang Ji, Alexander A Fisher, Shuo Su, Jeffrey L Thorne, Barney I Potter, Philippe Lemey, Guy Baele, Marc A Suchard
Scalable Bayesian divergence time estimation with ratio transformations. Systematic biology (2023)
Alexander A Fisher, Xiang Ji, Akihiko Nishimura, Guy Baele, Philippe Lemey, Marc A Suchard
Shrinkage-based random local clocks with scalable inference. Molecular biology and evolution (2023)
Andrew Holtz, Guy Baele, Hervé Bourhy, Anna Zhukova
Integrating full and partial genome sequences to decipher the global spread of canine rabies virus. Nature communications 14 (1) (2023)
Xingguang Li, Nídia Sequeira Trovão, Joel O Wertheim, Guy Baele, Adriano de Bernardi Schneider
Optimizing ancestral trait reconstruction of large HIV Subtype C datasets through multiple-trait subsampling. Virus evolution 9 (2) (2023)
Wan-Ting He, Dongyan Li, Guy Baele, Jin Zhao, Zhiwen Jiang, Xiang Ji, Michael Veit, Marc A Suchard, Edward C Holmes, Philippe Lemey, Maciej F Boni, Shuo Su
Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype. Virus evolution 9 (2) (2023)
Gregory S Orf, Lester Josue Pérez, Karl A Ciuoderis, Andrés Cardona, Simón Villegas, Juan Pablo Hernandez Ortiz, Guy Baele, Aurash Mohaimani, Jorge E Osorio, Michael G Berg, Gavin A Cloherty
The Principles of SARS-CoV-2 Intervariant Competition Are Exemplified in the Pre-Omicron Era of the Colombian Epidemic. Microbiology spectrum (2023)
Maylis Layan, Nicola Felix Müller, Simon Dellicour, Nicola de Maio, Hervé Bourhy, Simon Cauchemez, Guy Baele
Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations. Virus evolution 9 (1) (2023)
Maylis Layan, Nicola Felix Müller, Simon Dellicour, Nicola de Maio, Hervé Bourhy, Simon Cauchemez, Guy Baele
Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations. Virus evolution 9 (1) (2023)
Jan Van Elslande, Femke Kerckhofs, Lize Cuypers, Elke Wollants, Barney Potter, Anne Vankeerberghen, Lien Cattoir, Astrid Holderbeke, Sylvie Behillil, Sarah Gorissen, Mandy Bloemen, Jef Arnout, Marc Van Ranst, Johan Van Weyenbergh, Piet Maes, Guy Baele, Pieter Vermeersch, Emmanuel André, null On Behalf Of The Cog-Belgium Consortium
Two Separate Clusters of SARS-CoV-2 Delta Variant Infections in a Group of 41 Students Travelling from India: An Illustration of the Need for Rigorous Testing and Quarantine. Viruses 14 (6) (2022)
Tim Blokker, Guy Baele, Philippe Lemey, Simon Dellicour
Phycova - a tool for exploring covariates of pathogen spread. Virus evolution 8 (1) (2022)
George M Nduva, Frederick Otieno, Joshua Kimani, Elizabeth Wahome, Lyle R McKinnon, Francois Cholette, Maxwell Majiwa, Moses Masika, Gaudensia Mutua, Omu Anzala, Susan M Graham, Larry Gelmon, Matt A Price, Adrian D Smith, Robert C Bailey, Guy Baele, Philippe Lemey, Amin S Hassan, Eduard J Sanders, Joakim Esbjörnsson
Quantifying rates of HIV-1 flow between risk groups and geographic locations in Kenya: A country-wide phylogenetic study. Virus evolution 8 (1) (2022)
Phuoc Thien Truong Nguyen, Ravi Kant, Frederik Van den Broeck, Maija T Suvanto, Hussein Abas Thamer Alburkat, Jenni M E Virtanen, Ella Ahvenainen, Robert Castren, Samuel Leandro Hong, Guy Baele, Maarit J Ahava, Hanna Jarva, Suvi Tuulia Jokiranta, Hannimari Kallio-Kokko, Eliisa Kekäläinen, Vesa Kirjavainen, Elisa Kortela, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Marc A Suchard, Sari Hannula, Pekka Ellonen, Tarja A Sironen, Philippe Lemey, Olli Vapalahti, Teemu Smura
The phylodynamics of SARS-CoV-2 during 2020 in Finland. Communications medicine 2 (2022)
Asghar Nasir, Ali Raza Bukhari, Nídia Sequeira Trovão, Peter M Thielen, Akbar Kanji, Syed Faisal Mahmood, Najia Karim Ghanchi, Zeeshan Ansar, Brian Merritt, Thomas Mehoke, Safina Abdul Razzak, Muhammed Asif Syed, Suhail Raza Shaikh, Mansoor Wassan, Uzma Bashir Aamir, Guy Baele, Zeba A Rasmussen, David Spiro, Rumina Hasan, Zahra Hasan
Evolutionary history and introduction of SARS-CoV-2 Alpha VOC/B.1.1.7 in Pakistan through international travelers. Virus evolution 8 (1) (2022)
Simon Dellicour, Philippe Lemey, Marc A Suchard, Marius Gilbert, Guy Baele
Accommodating sampling location uncertainty in continuous phylogeography. Virus evolution 8 (1) (2022)
Anderson Fernandes Brito, Elizaveta Semenova, Gytis Dudas, Gabriel W Hassler, Chaney C Kalinich, Moritz U G Kraemer, Joses Wei Hao Ho, Houriiyah Tegally, George Githinji, Charles N Agoti, Lucy E Matkin, Charles Whittaker, null null, null null, null null, null null, null null, null null, null null, null null, Benjamin Peter Howden, Vitali Sintchenko, Neta S Zuckerman, Orna Mor, Heather M Blankenship, Tulio de Oliveira, Raymond Tzer Pin Lin, Marilda Mendonça Siqueira, Paola Cristina Resende Silva, Ana Tereza Ribeiro de Vasconcelos, Fernando Rosado Spilki, Renato Santana de Aguiar, Ivailo Alexiev, Ivan N Ivanov, Ivva Philipova, Christine V F Carrington, Nikita S D Sahadeo, Ben Branda, Céline Gurry, Sebastian Maurer-Stroh, Dhamari Naidoo, Karin J von Eije, Mark D Perkins, Maria D Van Kerkhove, Sarah C Hill, Ester C Sabino, Oliver George Pybus, Christopher Dye, Samir Bhatt, Seth R Flaxman, Marc A Suchard, Nathan D Grubaugh, Guy Baele, Nuno Rodrigues Faria
Global disparities in SARS-CoV-2 genomic surveillance. Nature communications 13 (1) (2022)
John T McCrone, Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben C Lambert, Rhys P D Inward, Samir Bhatt, Erik M Volz, Christopher Ruis, Simon Dellicour, Guy Baele, Alexander E Zarebski, Adam Sadilek, Neo Wu, Aaron Schneider, Xiang Ji, Jayna Raghwani, Benjamin C Jackson, Rachel Colquhoun, Áine O'Toole, Thomas P Peacock, Kate Twohig, Simon Thelwall, Gavin Dabrera, Richard Myers, null null, Nuno Rodrigues Faria, Carmen Huber, Isaac I Bogoch, Kamran Khan, Louis du Plessis, Jeffrey C Barrett, David M Aanensen, Wendy S Barclay, Meera Chand, Thomas Richard Connor, Nicholas J Loman, Marc A Suchard, Oliver George Pybus, Andrew Rambaut, Moritz U G Kraemer
Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature 610 (7930) (2022)
Timothee Bruel, Jérôme Hadjadj, Piet Maes, Delphine Planas, Aymeric Seve, Isabelle Staropoli, Florence Guivel-Benhassine, Françoise Porrot, William-Henry Bolland, Yann Nguyen, Marion Casadevall, Caroline Charre, Hélène Péré, David Veyer, Matthieu Prot, Artem Baidaliuk, Lize Cuypers, Cyril Planchais, Hugo Mouquet, Guy Baele, Luc Mouthon, Laurent Hocqueloux, Etienne Simon-Loriere, Emmanuel André, Benjamin Terrier, Thierry Prazuck, Olivier Schwartz
Serum neutralization of SARS-CoV-2 Omicron sublineages BA.1 and BA.2 in patients receiving monoclonal antibodies. Nature medicine 28 (6) (2022)
Sapna Sharma, Thomas Vercruysse, Lorena Sanchez-Felipe, Winnie Kerstens, Madina Rasulova, Lindsey Bervoets, Carolien De Keyzer, Rana Abdelnabi, Shi-Yan Caroline Foo, Viktor Lemmens, Dominique Van Looveren, Piet Maes, Guy Baele, Birgit Weynand, Philippe Lemey, Johan Neyts, Hendrik-Jan Thibaut, Kai Dallmeier
Updated vaccine protects against SARS-CoV-2 variants including Omicron (B.1.1.529) and prevents transmission in hamsters. Nature communications 13 (1) (2022)
Lize Cuypers, Simon Dellicour, Samuel Leandro Hong, Barney I Potter, Bruno Verhasselt, Nick Vereecke, Laurens Lambrechts, Keith Durkin, Vincent Bours, Sofieke Klamer, Guillaume Bayon-Vicente, Carl Vael, Kevin K Ariën, Ricardo De Mendonca, Oriane Soetens, Charlotte Michel, Bertrand Bearzatto, Reinout Naesens, Jeremie Gras, Anne Vankeerberghen, Veerle Matheeussen, Geert Martens, Dagmar Obbels, Ann Lemmens, Bea Van den Poel, Ellen Van Even, Klara De Rauw, Luc Waumans, Marijke Reynders, Jonathan Degosserie, null null, Piet Maes, Emmanuel André, Guy Baele
Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants. Viruses 14 (10) (2022)
Nídia Sequeira Trovão, Marijn Thijssen, Bram Vrancken, Andrea-Clemencia Pineda-Peña, Thomas Mina, Samad Amini-Bavil-Olyaee, Philippe Lemey, Guy Baele, Mahmoud Reza Pourkarim
Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1. Virus evolution 8 (1) (2022)
Wan-Ting He, Nena Bollen, Yi Xu, Jin Zhao, Simon Dellicour, Ziqing Yan, Wenjie Gong, Cheng Zhang, Letian Zhang, Meng Lu, Alexander Lai, Marc A Suchard, Xiang Ji, Changchun Tu, Philippe Lemey, Guy Baele, Shuo Su
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World. Molecular biology and evolution 39 (2) (2022)
Tamara Kaleta, Lisa Kern, Samuel Leandro Hong, Martin Hölzer, Georg Kochs, Julius Beer, Daniel Schnepf, Martin Schwemmle, Nena Bollen, Philipp Kolb, Magdalena Huber, Svenja Ulferts, Sebastian Weigang, Gytis Dudas, Alice Wittig, Lena Jaki, Abdou Padane, Adamou Lagare, Mounerou Salou, Egon Anderson Ozer, Ndodo Nnaemeka, John Kofi Odoom, Robert Rutayisire, Alia Benkahla, Chantal Akoua-Koffi, Abdoul-Salam Ouedraogo, Etienne Simon-Loriere, Vincent Enouf, Stefan Kröger, Sebastien Calvignac-Spencer, Guy Baele, Marcus Panning, Jonas Fuchs
Antibody escape and global spread of SARS-CoV-2 lineage A.27. Nature communications 13 (1) (2022)
Sofia G Seabra, Pieter J K Libin, Kristof Theys, Anna Zhukova, Barney I Potter, Hanna Nebenzahl-Guimaraes, Alexander E Gorbalenya, Igor A Sidorov, Victor Pimentel, Marta Pingarilho, Ana Tereza Ribeiro de Vasconcelos, Simon Dellicour, Ricardo Khouri, Olivier Gascuel, Anne-Mieke Vandamme, Guy Baele, Lize Cuypers, Ana B Abecasis
Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal. Virus evolution 8 (1) (2022)
Nicholas M Fountain-Jones, Simona J Kraberger, Roderick B Gagne, Marie L J Gilbertson, Daryl R Trumbo, Michael A Charleston, Patricia E Salerno, W Chris Funk, Kevin Crooks, Kenneth Logan, Mathew Alldredge, Simon Dellicour, Guy Baele, Xavier Didelot, Susan VandeWoude, Scott Carver, Meggan E Craft
Hunting alters viral transmission and evolution in a large carnivore. Nature ecology & evolution 6 (2) (2022)
Nick Vereecke, Lise Kirstine Kvisgaard, Guy Baele, Carine Boone, Marius Kunze, Lars Erik Larsen, Sebastiaan Theuns, Hans Nauwynck
Molecular epidemiology of Porcine Parvovirus Type 1 (PPV1) and the reactivity of vaccine-induced antisera against historical and current PPV1 strains. Virus evolution 8 (1) (2022)
Maylis Layan, Simon Dellicour, Guy Baele, Simon Cauchemez, Hervé Bourhy
Mathematical modelling and phylodynamics for the study of dog rabies dynamics and control: A scoping review. PLoS neglected tropical diseases 15 (5) (2021)
Yvan Butera, Enatha Mukantwari, Maria Artesi, Jeanne d'arc Umuringa, Áine Niamh O'Toole, Verity Hill, Stefan Rooke, Samuel Leandro Hong, Simon Dellicour, Onesphore Majyambere, Sebastien Bontems, Bouchra Boujemla, Josh Quick, Paola Cristina Resende, Nick Loman, Esperance Umumararungu, Alice Kabanda, Marylin Milumbu Murindahabi, Patrick Tuyisenge, Misbah Gashegu, Jean Paul Rwabihama, Reuben Sindayiheba, Djordje Gikic, Jacob Souopgui, Wilfred Ndifon, Robert Rutayisire, Swaibu Gatare, Tharcisse Mpunga, Daniel Ngamije, Vincent Bours, Andrew Rambaut, Sabin Nsanzimana, Guy Baele, Keith Durkin, Léon Mutesa, Nadine Rujeni
Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity. Nature communications 12 (1) (2021)
Kanika D Nahata, Nena Bollen, Mandev S Gill, Maylis Layan, Hervé Bourhy, Simon Dellicour, Guy Baele
On the Use of Phylogeographic Inference to Infer the Dispersal History of Rabies Virus: A Review Study. Viruses 13 (8) (2021)
Moritz U G Kraemer, Verity Hill, Christopher Ruis, Simon Dellicour, Sumali Bajaj, John T McCrone, Guy Baele, Kris Varun Parag, Anya Lindström Battle, Bernardo Gutierrez, Benjamin C Jackson, Rachel Colquhoun, Áine Niamh O'Toole, Brennan Klein, Alessandro Vespignani, null null, Erik M Volz, Nuno Rodrigues Faria, David M Aanensen, Nicholas James Loman, Louis du Plessis, Simon Cauchemez, Andrew Rambaut, Samuel V Scarpino, Oliver George Pybus
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science (New York, N.Y.) 373 (6557) (2021)
Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stephane Guindon, Nicola de Maio
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk. PLoS computational biology 17 (1) (2021)
Gytis Dudas, Samuel Leandro Hong, Barney I Potter, Sebastien Calvignac-Spencer, Frédéric S Niatou-Singa, Thais B Tombolomako, Terence Fuh-Neba, Ulrich Vickos, Markus Ulrich, Fabian Hubertus Leendertz, Kamran Khan, Carmen Huber, Alexander Watts, Ingrida Olendraitė, Joost Snijder, Kim N Wijnant, Alexandre M J J Bonvin, Pascale Martres, Sylvie Behillil, Ahidjo Ayouba, Martin Foudi Maidadi, Dowbiss Meta Djomsi, Celestin Godwe, Christelle Butel, Aistis Šimaitis, Migle Gabrielaite, Monika Katėnaitė, Rimvydas Norvilas, Ligita Raugaitė, Giscard Wilfried Koyaweda, Jephté Kaleb Kandou, Rimvydas Jonikas, Inga Nasvytienė, Živilė Žemeckienė, Dovydas Gečys, Kamilė Tamušauskaitė, Milda Norkienė, Emilija Vasiliūnaitė, Danguolė Žiogienė, Albertas Timinskas, Marius Šukys, Mantas Šarauskas, Gediminas Alzbutas, Adrienne Amuri Aziza, Eddy Kinganda Lusamaki, Jean-Claude Makangara Cigolo, Francisca Muyembe Mawete, Emmanuel Lokilo Lofiko, Placide Mbala Kingebeni, Jean-Jacques Muyembe Tamfum, Marie Roseline Darnycka Belizaire, René Ghislain Essomba, Marie Claire Okomo Assoumou, Akenji Blaise Mboringong, Alle Baba Dieng, Dovilė Juozapaitė, Salome Hosch, Justino Obama, Mitoha Ondo'o Ayekaba, Daniel Naumovas, Arnoldas Pautienius, Clotaire Donatien Rafaï, Astra Vitkauskienė, Rasa Ugenskienė, Alma Gedvilaitė, Darius Čereškevičius, Vaiva Lesauskaitė, Lukas Žemaitis, Laimonas Griškevičius, Guy Baele
Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. Nature communications 12 (1) (2021)
Jean-Paul Pirnay, Philippe Selhorst, Samuel Leandro Hong, Christel Cochez, Barney Potter, Piet Maes, Mauro Petrillo, Gytis Dudas, Vincent Claes, Yolien Van der Beken, Gilbert Verbeken, Julie Degueldre, Simon Dellicour, Lize Cuypers, France T'Sas, Guy Van den Eede, Bruno Verhasselt, Wouter Weuts, Cedric Smets, Jan Mertens, Philippe Geeraerts, Kevin K Ariën, Emmanuel André, Pierre Neirinckx, Patrick Soentjens, Guy Baele
Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations. Viruses 13 (7) (2021)
John T McCrone, Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben C Lambert, Rhys Inward, Samir Bhatt, Erik M Volz, Christopher Ruis, Simon Dellicour, Guy Baele, Alexander E Zarebski, Adam Sadilek, Neo Wu, Aaron Schneider, Xiang Ji, Jayna Raghwani, Benjamin C Jackson, Rachel Colquhoun, Áine O'Toole, Thomas P Peacock, Kate Twohig, Simon Thelwall, Gavin Dabrera, Richard Myers, null null, Nuno R Faria, Carmen Huber, Isaac I Bogoch, Kamran Khan, Louis du Plessis, Jeffrey C Barrett, David M Aanensen, Wendy S Barclay, Meera Chand, Thomas Richard Connor, Nicholas J Loman, Marc A Suchard, Oliver George Pybus, Andrew Rambaut, Moritz U G Kraemer
Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Research square (2021)
Philippe Lemey, Nick Ruktanonchai, Samuel Leandro Hong, Vittoria Colizza, Chiara Poletto, Frederik Van den Broeck, Mandev S Gill, Xiang Ji, Anthony Levasseur, Bas Oude Munnink, Marion Koopmans, Adam Sadilek, Shengjie Lai, Andrew J Tatem, Guy Baele, Marc A Suchard, Simon Dellicour
Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature 595 (7869) (2021)
Anderson Fernandes Brito, Elizaveta Semenova, Gytis Dudas, Gabriel W Hassler, Chaney C Kalinich, Moritz U G Kraemer, Sarah Catherine Hill, null null, Ester Cerdeira Sabino, Oliver George Pybus, Christopher Dye, Samir Bhatt, Seth R Flaxman, Marc A Suchard, Nathan D Grubaugh, Guy Baele, Nuno Rodrigues Faria
Global disparities in SARS-CoV-2 genomic surveillance. medRxiv : the preprint server for health sciences (2021)
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