Geoffrey Fudenberg (Geoff Fudenberg)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 15

Top Venues

Nature communications

PLoS computational biology

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Harvard University

United States

PHD :: Biophysics

Publications

null null, Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M Flyamer, Aleksandra A Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A Oksuz, Sergey V Venev, Yao Xiao
Cooltools: Enabling high-resolution Hi-C analysis in Python. PLoS computational biology 20 (5) (2024)
null null, Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M Flyamer, Aleksandra A Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A Oksuz, Sergey V Venev, Yao Xiao
Cooltools: Enabling high-resolution Hi-C analysis in Python. PLoS computational biology 20 (5) (2024)
Maxime M C Tortora, Geoffrey Fudenberg
The physical chemistry of interphase loop extrusion. bioRxiv : the preprint server for biology (2024)
null null, Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M Flyamer, Aleksandra A Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A Oksuz, Sergey V Venev, Yao Xiao
Cooltools: Enabling high-resolution Hi-C analysis in Python. PLoS computational biology 20 (5) (2024)
null null, Nezar Abdennur, Geoffrey Fudenberg, Ilya M Flyamer, Aleksandra A Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey V Venev
Pairtools: from sequencing data to chromosome contacts. bioRxiv : the preprint server for biology (2023)
Tsung-Yu Lu, Paulina N Smaruj, Geoffrey Fudenberg, Nicholas Mancuso, Mark J P Chaisson
The motif composition of variable-number tandem repeats impacts gene expression. Genome research (2023)
null null, Nezar Abdennur, Geoffrey Fudenberg, Ilya M Flyamer, Aleksandra A Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey V Venev
Pairtools: from sequencing data to chromosome contacts. bioRxiv : the preprint server for biology (2023)
Geoffrey Fudenberg, Elphѐge P Nora
Embryogenesis without CTCF in flies and vertebrates. Nature structural & molecular biology 28 (10) (2021)
Geoffrey Fudenberg, David R Kelley, Katherine S Pollard
Predicting 3D genome folding from DNA sequence with Akita. Nature methods 17 (11) (2020)
Elphѐge P Nora, Laura Caccianini, Geoffrey Fudenberg, Kevin So, Vasumathi Kameswaran, Abigail Nagle, Alec Uebersohn, Bassam Hajj, Agnès Le Saux, Antoine Coulon, Leonid A Mirny, Katherine S Pollard, Maxime Dahan, Benoit G Bruneau
Molecular basis of CTCF binding polarity in genome folding. Nature communications 11 (1) (2020)
Jelena Erceg, Jumana AlHaj Abed, Anton Goloborodko, Bryan R Lajoie, Geoffrey Fudenberg, Nezar Abdennur, Maxim Imakaev, Ruth B McCole, Son C Nguyen, Wren Saylor, Eric F Joyce, T Niroshini Senaratne, Mohammed A Hannan, Guy Nir, Job Dekker, Leonid A Mirny, C-Ting Wu
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos. Nature communications 10 (1) (2019)
Jumana AlHaj Abed, Jelena Erceg, Anton Goloborodko, Son C Nguyen, Ruth B McCole, Wren Saylor, Geoffrey Fudenberg, Bryan R Lajoie, Job Dekker, Leonid A Mirny, C-Ting Wu
Highly structured homolog pairing reflects functional organization of the Drosophila genome. Nature communications 10 (1) (2019)
Stephanie A Schalbetter, Geoffrey Fudenberg, Jonathan Baxter, Katherine S Pollard, Matthew J Neale
Principles of meiotic chromosome assembly revealed in S. cerevisiae. Nature communications 10 (1) (2019)
Geoffrey Fudenberg, Katherine S Pollard
Chromatin features constrain structural variation across evolutionary timescales. Proceedings of the National Academy of Sciences of the United States of America 116 (6) (2019)
Johannes Nuebler, Geoffrey Fudenberg, Maxim Imakaev, Nezar Abdennur, Leonid A Mirny
Chromatin organization by an interplay of loop extrusion and compartmental segregation. Proceedings of the National Academy of Sciences of the United States of America 115 (29) (2018)

Geoffrey Fudenberg.css-eqlu8i{font-size:small;padding-left:4px;} (Geoff Fudenberg)

Publication Activity (10 Years)

Top Topics

Top Venues

Geoffrey Fudenberg (Geoff Fudenberg)