Job Dekker

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 75

Top Topics

Transcription Factor

Dna Methylation

Top Venues

Nature structural & molecular biology

bioRxiv : the preprint server for biology

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Ezequiel Hernán Calvo Roitberg, Christine L Carroll, Sergey V Venev, GyeungYun Kim, Steven T Mick, Job Dekker, Ana Fiszbein, Athma A Pai
mRNA initiation and termination are spatially coordinated. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Ezequiel Hernán Calvo Roitberg, Christine L Carroll, Sergey V Venev, GyeungYun Kim, Steven T Mick, Job Dekker, Ana Fiszbein, Athma A Pai
mRNA initiation and termination are spatially coordinated. bioRxiv : the preprint server for biology (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Ezequiel Hernán Calvo Roitberg, Christine L Carroll, Sergey V Venev, GyeungYun Kim, Steven T Mick, Job Dekker, Ana Fiszbein, Athma A Pai
mRNA initiation and termination are spatially coordinated. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics (2024)
Emma V Watson, Jake June-Koo Lee, Doga C Gulhan, Giorgio E M Melloni, Sergey V Venev, Rayna Y Magesh, Abdulrazak Frederick, Kunitoshi Chiba, Eric C Wooten, Kamila Naxerova, Job Dekker, Peter J Park, Stephen J Elledge
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns. Nature genetics 56 (5) (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Kumiko Samejima, Johan H Gibcus, Sameer Abraham, Fernanda Cisneros-Soberanis, Itaru Samejima, Alison J Beckett, Nina Pucekova, Maria Alba Abad, Bethan Medina-Pritchard, James R Paulson, Linfeng Xie, Jeyaprakash Arulanandam, Ian A Prior, Leonid A Mirny, Job Dekker, Anton Goloborodko, William C Earnshaw
Rules of engagement for condensins and cohesins guide mitotic chromosome formation. bioRxiv : the preprint server for biology (2024)
Coral Y Zhou, Bastiaan Dekker, Ziyuan Liu, Hilda Cabrera, Joel Ryan, Job Dekker, Rebecca Heald
Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus . eLife 12 (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Coral Y Zhou, Bastiaan Dekker, Ziyuan Liu, Hilda Cabrera, Joel Ryan, Job Dekker, Rebecca Heald
Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus . eLife 12 (2023)
Ferdinand Marletaz, Elisa de la Calle-Mustienes, Rafael D Acemel, Christina Paliou, Silvia Naranjo, Pedro Manuel Martínez-García, Ildefonso Cases, Victoria A Sleight, Christine Hirschberger, Marina Marcet-Houben, Dina Navon, Ali Andrescavage, Ksenia Skvortsova, Paul Edward Duckett, Álvaro González-Rajal, Ozren Bogdanovic, Johan H Gibcus, Liyan Yang, Lourdes Gallardo-Fuentes, Ismael Sospedra, Javier Lopez-Rios, Fabrice Darbellay, Axel Visel, Job Dekker, Neil Shubin, Toni Gabaldon, Tetsuya Nakamura, Juan Jesús Tena, Darío G Lupiáñez, Daniel S Rokhsar, José Luis Gómez-Skarmeta
The little skate genome and the evolutionary emergence of wing-like fins. Nature (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Silvia Kocanova, Flavien Raynal, Isabelle Goiffon, Betul Akgol Oksuz, Davide Baú, Alain Kamgoué, Sylvain Cantaloube, Ye Zhan, Bryan Lajoie, Marc A Marti-Renom, Job Dekker, Kerstin Bystricky
Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells. Life science alliance 7 (2) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Coral Y Zhou, Bastiaan Dekker, Ziyuan Liu, Hilda Cabrera, Joel Ryan, Job Dekker, Rebecca Heald
Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus . eLife 12 (2023)
Coral Y Zhou, Bastiaan Dekker, Ziyuan Liu, Hilda Cabrera, Joel Ryan, Job Dekker, Rebecca Heald
Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus . eLife 12 (2023)
Ariel D Pourmorady, Elizaveta V Bashkirova, Andrea Maria Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas
RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature 625 (7993) (2023)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Author Correction: Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2023)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Bastiaan Dekker, Job Dekker
Regulation of the mitotic chromosome folding machines. The Biochemical journal 479 (20) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Susanne Leidescher, Johannes Ribisel, Simon Ullrich, Yana Feodorova, Erica Hildebrand, Aleksandra A Galitsyna, Sebastian Bultmann, Stephanie Link, Katharina Thanisch, Christopher B Mulholland, Job Dekker, Heinrich Leonhardt, Leonid A Mirny, Irina Solovei
Spatial organization of transcribed eukaryotic genes. Nature cell biology 24 (3) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Daniel J Emerson, Peiyao A Zhao, Ashley L Cook, R Jordan Barnett, Kyle N Klein, Dalila Saulebekova, Chunmin Ge, Linda Zhou, Zoltan Simandi, Miriam K Minsk, Katelyn R Titus, Weitao Wang, Wanfeng Gong, Di Zhang, Liyan Yang, Sergey V Venev, Johan H Gibcus, Hongbo Yang, Takayo Sasaki, Masato T Kanemaki, Feng Yue, Job Dekker, Chun-Long Chen, David M Gilbert, Jennifer E Phillips-Cremins
Cohesin-mediated loop anchors confine the locations of human replication origins. Nature 606 (7915) (2022)
Yu Liu, Job Dekker
CTCF-CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity. Nature cell biology 24 (10) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology (2022)
Anna Tigano, Arne Jacobs, Aryn P Wilder, Ankita Nand, Ye Zhan, Job Dekker, Nina Overgaard Therkildsen
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation. Genome biology and evolution 13 (6) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
George Spracklin, Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A Mirny, Job Dekker
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2022)
Anne-Laure Valton, Sergey V Venev, Barbara Mair, Eraj Shafiq Khokhar, Amy H Y Tong, Matej Usaj, Katherine Chan, Athma A Pai, Jason Moffat, Job Dekker
A cohesin traffic pattern genetically linked to gene regulation. Nature structural & molecular biology (2022)
Pavan Choppakatla, Bastiaan Dekker, Erin E Cutts, Alessandro Vannini, Job Dekker, Hironori Funabiki
Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization. eLife 10 (2021)
Hye Ji Cha, Özgün Uyan, Yan Kai, Tianxin Liu, Qian Zhu, Zuzana Tothova, Giovanni A Botten, Jian Xu, Guo-Cheng Yuan, Job Dekker, Stuart H Orkin
Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture. Nature communications 12 (1) (2021)
Ankita Nand, Ye Zhan, Octavio R Salazar, Manuel Aranda, Christian R Voolstra, Job Dekker
Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum. Nature genetics 53 (5) (2021)
Houda Belaghzal, Tyler Borrman, Andrew D Stephens, Denis L Lafontaine, Sergey V Venev, Nishigandha Phalke, John F Marko, Job Dekker
Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics. Nature genetics 53 (3) (2021)
Betul Akgol Oksuz, Liyan Yang, Sameer Abraham, Sergey V Venev, Nils Krietenstein, Krishna Mohan Parsi, Hakan Ozadam, Marlies E Oomen, Ankita Nand, Hui Mao, Ryan M J Genga, René Maehr, Oliver J Rando, Leonid A Mirny, Johan H Gibcus, Job Dekker
Systematic evaluation of chromosome conformation capture assays. Nature methods 18 (9) (2021)
Filipe Tavares-Cadete, Davood Norouzi, Bastiaan Dekker, Yu Liu, Job Dekker
Multi-contact 3C reveals that the human genome during interphase is largely not entangled. Nature structural & molecular biology 27 (12) (2020)
null null, Jill E Moore, Michael J Purcaro, Henry E Pratt, Charles B Epstein, Noam Shoresh, Jessika Adrian, Trupti Kawli, Carrie A Davis, Alexander Dobin, Rajinder Kaul, Jessica Halow, Eric L Van Nostrand, Peter Freese, David U Gorkin, Yin Shen, Yupeng He, Mark Mackiewicz, Florencia Pauli-Behn, Brian A Williams, Ali Mortazavi, Cheryl A Keller, Xiao-Ou Zhang, Shaimae I Elhajjajy, Jack Huey, Diane E Dickel, Valentina Snetkova, Xintao Wei, Xiaofeng Wang, Juan Carlos Rivera-Mulia, Joel Rozowsky, Jing Zhang, Surya B Chhetri, Jialing Zhang, Alec Victorsen, Kevin P White, Axel Visel, Gene W Yeo, Christopher B Burge, Eric Lécuyer, David M Gilbert, Job Dekker, John L Rinn, Eric M Mendenhall, Joseph R Ecker, Manolis Kellis, Robert J Klein, William S Noble, Anshul Kundaje, Roderic Guigó, Peggy J Farnham, J Michael Cherry, Richard M Myers, Bing Ren, Brenton R Graveley, Mark B Gerstein, Len A Pennacchio, Michael Paul Snyder, Bradley E Bernstein, Barbara Wold, Ross Cameron Hardison, Thomas R Gingeras, John A Stamatoyannopoulos, Nishigandha Phalke
Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature 583 (7818) (2020)
Maximilian H Fitz-James, Pin Tong, Alison L Pidoux, Hakan Ozadam, Liyan Yang, Sharon A White, Job Dekker, Robin C Allshire
Large domains of heterochromatin direct the formation of short mitotic chromosome loops. eLife 9 (2020)
Marlies E Oomen, Adam K Hedger, Jonathan K Watts, Job Dekker
Detecting chromatin interactions between and along sister chromatids with SisterC. Nature methods 17 (10) (2020)
Marlies E Oomen, Anders S Hansen, Yu Liu, Xavier Darzacq, Job Dekker
CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning. Genome research 29 (2) (2019)
Kristin Abramo, Anne-Laure Valton, Sergey V Venev, Hakan Ozadam, A Nicole Fox, Job Dekker
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase. Nature cell biology 21 (11) (2019)
Jelena Erceg, Jumana AlHaj Abed, Anton Goloborodko, Bryan R Lajoie, Geoffrey Fudenberg, Nezar Abdennur, Maxim Imakaev, Ruth B McCole, Son C Nguyen, Wren Saylor, Eric F Joyce, T Niroshini Senaratne, Mohammed A Hannan, Guy Nir, Job Dekker, Leonid A Mirny, C-Ting Wu
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos. Nature communications 10 (1) (2019)
Jumana AlHaj Abed, Jelena Erceg, Anton Goloborodko, Son C Nguyen, Ruth B McCole, Wren Saylor, Geoffrey Fudenberg, Bryan R Lajoie, Job Dekker, Leonid A Mirny, C-Ting Wu
Highly structured homolog pairing reflects functional organization of the Drosophila genome. Nature communications 10 (1) (2019)
Michal R Gdula, Tatyana B Nesterova, Greta Pintacuda, Jonathan Godwin, Ye Zhan, Hakan Ozadam, Michael McClellan, Daniella Moralli, Felix Krueger, Catherine M Green, Wolf Reik, Skirmantas Kriaucionis, Edith Heard, Job Dekker, Neil Brockdorff
The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome. Nature communications 10 (1) (2019)
Johan H Gibcus, Kumiko Samejima, Anton Goloborodko, Itaru Samejima, Natalia Naumova, Johannes Nuebler, Masato T Kanemaki, Linfeng Xie, James R Paulson, William C Earnshaw, Leonid A Mirny, Job Dekker
A pathway for mitotic chromosome formation. Science (New York, N.Y.) 359 (6376) (2018)
A Marieke Oudelaar, James O J Davies, Lars L P Hanssen, Jelena M Telenius, Ron Schwessinger, Yu Liu, Jill M Brown, Damien J Downes, Andrea M Chiariello, Simona Bianco, Mario Nicodemi, Veronica J Buckle, Job Dekker, Douglas R Higgs, Jim R Hughes
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains. Nature genetics 50 (12) (2018)
Jesse R Dixon, Jie Xu, Vishnu Dileep, Ye Zhan, Fan Song, Victoria T Le, Galip Gürkan Yardımcı, Abhijit Chakraborty, Darrin V Bann, Yanli Wang, Royden Clark, Lijun Zhang, Hongbo Yang, Tingting Liu, Sriranga Iyyanki, Lin An, Christopher Pool, Takayo Sasaki, Juan Carlos Rivera-Mulia, Hakan Ozadam, Bryan R Lajoie, Rajinder Kaul, Michael Buckley, Kristen Lee, Morgan Diegel, Dubravka Pezic, Christina Ernst, Suzana Hadjur, Duncan T Odom, John A Stamatoyannopoulos, James R Broach, Ross C Hardison, Ferhat Ay, William Stafford Noble, Job Dekker, David M Gilbert, Feng Yue
Integrative detection and analysis of structural variation in cancer genomes. Nature genetics 50 (10) (2018)
Stephanie Andrea Schalbetter, Anton Goloborodko, Geoffrey Fudenberg, Jon-Matthew Belton, Catrina Miles, Miao Yu, Job Dekker, Leonid Mirny, Jonathan Baxter
SMC complexes differentially compact mitotic chromosomes according to genomic context. Nature cell biology 19 (9) (2017)