Katherine S Pollard (Katie S Pollard)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 78

Top Venues

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

Nature communications

mSystems

This page only lists publications with an associated author ORCID identifier.

Publications

Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Daniel D Vo, Arjun Bhattacharya, Nana Matoba, Miao Tang, Chuan Jiao, Minsoo Kim, Ellen Tsai, Celine Hoh, Nil Aygün, Rebecca L Walker, Christos Chatzinakos, Declan Clarke, Henry E Pratt, null null, Mette A Peters, Mark B Gerstein, Nikolaos P Daskalakis, Nishigandha Phalke, Andrew E Jaffe, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Nicholas J Bray, Nenad Sestan, Daniel H Geschwind, Kathryn Roeder, Alexander Gusev, Bogdan Pasaniuc, Jason L Stein, Michael I Love, Katherine S Pollard, Yanling Liu, Michael J Gandal, null null
Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science (New York, N.Y.) 384 (6698) (2024)
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Daniel D Vo, Arjun Bhattacharya, Nana Matoba, Miao Tang, Chuan Jiao, Minsoo Kim, Ellen Tsai, Celine Hoh, Nil Aygün, Rebecca L Walker, Christos Chatzinakos, Declan Clarke, Henry E Pratt, null null, Mette A Peters, Mark B Gerstein, Nikolaos P Daskalakis, Nishigandha Phalke, Andrew E Jaffe, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Nicholas J Bray, Nenad Sestan, Daniel H Geschwind, Kathryn Roeder, Alexander Gusev, Bogdan Pasaniuc, Jason L Stein, Michael I Love, Katherine S Pollard, Yanling Liu, Michael J Gandal, null null
Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science (New York, N.Y.) 384 (6698) (2024)
Ketrin Gjoni, Katherine S Pollard
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. Bioinformatics (Oxford, England) 40 (6) (2024)
Shuzhen Kuang, Katherine S Pollard
Exploring the roles of RNAs in chromatin architecture using deep learning. Nature communications 15 (1) (2024)
Calla Martyn, Beth M Hayes, Domokos Lauko, Edward Midthun, Gloria Castaneda, Angela Bosco-Lauth, Daniel J Salkeld, Amy L Kistler, Katherine S Pollard, Seemay Chou
Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements. mSystems 9 (6) (2024)
Ketrin Gjoni, Katherine S Pollard
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. Bioinformatics (Oxford, England) 40 (6) (2024)
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Daniel D Vo, Arjun Bhattacharya, Nana Matoba, Miao Tang, Chuan Jiao, Minsoo Kim, Ellen Tsai, Celine Hoh, Nil Aygün, Rebecca L Walker, Christos Chatzinakos, Declan Clarke, Henry E Pratt, null null, Mette A Peters, Mark B Gerstein, Nikolaos P Daskalakis, Nishigandha Phalke, Andrew E Jaffe, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Nicholas J Bray, Nenad Sestan, Daniel H Geschwind, Kathryn Roeder, Alexander Gusev, Bogdan Pasaniuc, Jason L Stein, Michael I Love, Katherine S Pollard, Yanling Liu, Michael J Gandal, null null
Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science (New York, N.Y.) 384 (6698) (2024)
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Daniel D Vo, Arjun Bhattacharya, Nana Matoba, Miao Tang, Chuan Jiao, Minsoo Kim, Ellen Tsai, Celine Hoh, Nil Aygün, Rebecca L Walker, Christos Chatzinakos, Declan Clarke, Henry E Pratt, null null, Mette A Peters, Mark B Gerstein, Nikolaos P Daskalakis, Nishigandha Phalke, Andrew E Jaffe, Joel E Kleinman, Thomas M Hyde, Daniel R Weinberger, Nicholas J Bray, Nenad Sestan, Daniel H Geschwind, Kathryn Roeder, Alexander Gusev, Bogdan Pasaniuc, Jason L Stein, Michael I Love, Katherine S Pollard, Yanling Liu, Michael J Gandal, null null
Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science (New York, N.Y.) 384 (6698) (2024)
Calla Martyn, Beth M Hayes, Domokos Lauko, Edward Midthun, Gloria Castaneda, Angela Bosco-Lauth, Daniel J Salkeld, Amy L Kistler, Katherine S Pollard, Seemay Chou
Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements. mSystems 9 (6) (2024)
Calla Martyn, Beth M Hayes, Domokos Lauko, Edward Midthun, Gloria Castaneda, Angela Bosco-Lauth, Daniel J Salkeld, Amy L Kistler, Katherine S Pollard, Seemay Chou
Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements. mSystems 9 (6) (2024)
Ketrin Gjoni, Katherine S Pollard
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. Bioinformatics (Oxford, England) 40 (6) (2024)
Calla Martyn, Beth M Hayes, Domokos Lauko, Edward Midthun, Gloria Castaneda, Angela Bosco-Lauth, Daniel J Salkeld, Amy L Kistler, Katherine S Pollard, Seemay Chou
Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements. mSystems 9 (6) (2024)
Shuzhen Kuang, Katherine S Pollard
Exploring the roles of RNAs in chromatin architecture using deep learning. Nature communications 15 (1) (2024)
Calla Martyn, Beth M Hayes, Domokos Lauko, Edward Midthun, Gloria Castaneda, Angela Bosco-Lauth, Daniel J Salkeld, Amy L Kistler, Katherine S Pollard, Seemay Chou
Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements. mSystems (2024)
Shuzhen Kuang, Katherine S Pollard
Exploring the roles of RNAs in chromatin architecture using deep learning. Nature communications 15 (1) (2024)
Ketrin Gjoni, Katherine S Pollard
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. Bioinformatics (Oxford, England) 40 (6) (2024)
Ketrin Gjoni, Katherine S Pollard
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. Bioinformatics (Oxford, England) 40 (6) (2024)
Shuzhen Kuang, Katherine S Pollard
Exploring the roles of RNAs in chromatin architecture using deep learning. Nature communications 15 (1) (2024)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Shuzhen Kuang, Katherine S Pollard
Exploring the Roles of RNAs in Chromatin Architecture Using Deep Learning. bioRxiv : the preprint server for biology (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Laura M Gunsalus, Michael J Keiser, Katherine S Pollard
ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization. bioRxiv : the preprint server for biology (2023)
Chengyu Deng, Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F Przytycki, Fumitaka Inoue, Daniela A Pereira, Davide Capauto, Scott Norton, Flora M Vaccarino, Alex Aaron Pollen, Tomasz J Nowakowski, Nadav Ahituv, Katherine S Pollard
Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex. bioRxiv : the preprint server for biology (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Xiaofan Jin, Feiqiao Brian Yu, Jia Yan, Allison M Weakley, Veronika Dubinkina, Xiandong Meng, Katherine S Pollard
Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization. Nature communications 14 (1) (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Colin M Brand, Shuzhen Kuang, Erin N Gilbertson, Evonne McArthur, Katherine S Pollard, Timothy H Webster, Anthony Capra
Sequence-based machine learning reveals 3D genome differences between bonobos and chimpanzees. bioRxiv : the preprint server for biology (2023)
Chengyu Deng, Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F Przytycki, Fumitaka Inoue, Daniela A Pereira, Davide Capauto, Scott Norton, Flora M Vaccarino, Alex Aaron Pollen, Tomasz J Nowakowski, Nadav Ahituv, Katherine S Pollard
Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex. bioRxiv : the preprint server for biology (2023)
Annamarie E Bustion, Renuka R Nayak, Ayushi Agrawal, Peter J Turnbaugh, Katherine S Pollard
SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. eLife 12 (2023)
Mengyao Yu, Andrew R Harper, Matthew Aguirre, Maureen Pittman, Catherine Tcheandjieu, Dulguun Amgalan, Christopher Grace, Anuj Goel, Martin Farrall, Ke Xiao, Jesse Engreitz, Katherine S Pollard, Hugh C Watkins, James R Priest
Genetic Determinants of the Interventricular Septum Are Linked to Ventricular Septal Defects and Hypertrophic Cardiomyopathy. Circulation. Genomic and precision medicine (2023)
Zhou Jason Shi, Stephen Nayfach, Katherine S Pollard
Maast: genotyping thousands of microbial strains efficiently. Genome biology 24 (1) (2023)
Chengyu Deng, Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F Przytycki, Fumitaka Inoue, Daniela A Pereira, Davide Capauto, Scott Norton, Flora M Vaccarino, Alex Aaron Pollen, Tomasz J Nowakowski, Nadav Ahituv, Katherine S Pollard
Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex. bioRxiv : the preprint server for biology (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Laura M Gunsalus, Evonne McArthur, Ketrin Gjoni, Shuzhen Kuang, Maureen Pittman, Anthony Capra, Katherine S Pollard
Comparing chromatin contact maps at scale: methods and insights. bioRxiv : the preprint server for biology (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark E Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan M Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna R Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin B Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia C Steiner, Megan Ann Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, null null, Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin T Nweeia, Pardis C Sabeti, Joshua D Kapp, Arian F A Smit, Mark S Springer, Emma C Teeling, Nishigandha Phalke, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson
Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.) 380 (6643) (2023)
Patrick F Sullivan, Jennifer R S Meadows, Steven Gazal, BaDoi N Phan, Xue Li, Diane P Genereux, Michael X Dong, Matteo Bianchi, Gregory Andrews, Sharadha Sakthikumar, Jessika Nordin, Ananya Roy, Matthew J Christmas, Voichita D Marinescu, Chao Wang, Ola Wallerman, James R Xue, Shuyang Yao, Quan Sun, Jin P Szatkiewicz, Jia Wen, Laura M Huckins, Alyssa J Lawler, Kathleen C Keough, Zhili Zheng, Jian Zeng, Naomi R Wray, Yun Li, Jessica S Johnson, Jiawen Chen, null null, Benedict Paten, Steven K Reilly, Graham M Hughes, Nishigandha Phalke, Katherine S Pollard, Andreas R Pfenning, Karin Forsberg-Nilsson, Elinor K Karlsson, Kerstin Lindblad-Toh, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.) 380 (6643) (2023)
Mengyao Yu, Matthew Aguirre, Meiwen Jia, Ketrin Gjoni, Aldo Cordova-Palomera, Chad Munger, Dulguun Amgalan, X Rosa Ma, Alexandre da Costa Pereira, Catherine Tcheandjieu, Christine E Seidman, Jonathan G Seidman, Martin Tristani-Firouzi, Wendy K Chung, Elizabeth Goldmuntz, Deepak Srivastava, Ruth J F Loos, Nathalie Chami, Heather J Cordell, Martina Dreßen, Bertram Mueller-Myhsok, Harald Lahm, Markus Krane, Katherine S Pollard, Jesse M Engreitz, Sarah A Gagliano Taliun, Bruce D Gelb, James R Priest
Oligogenic Architecture of Rare Noncoding Variants Distinguishes 4 Congenital Heart Disease Phenotypes. Circulation. Genomic and precision medicine (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Ketrin Gjoni, Katherine S Pollard
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models. bioRxiv : the preprint server for biology (2023)
Peter Spanogiannopoulos, Than S Kyaw, Benjamin G Horst, Patrick H Bradley, Joyce V Lee, Jonathan Melamed, Ysabella Noelle Amora Malig, Kathy N Lam, Daryll Gempis, Moriah Sandy, Wesley Kidder, Erin L Van Blarigan, Chloe E Atreya, Alan Venook, Roy R Gerona, Andrei Goga, Katherine S Pollard, Peter J Turnbaugh
Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism. Nature microbiology 7 (10) (2022)
Svetlana Lyalina, Ramunas Stepanauskas, Frank Wu, Shomyseh Sanjabi, Katherine S Pollard
Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community. PloS one 17 (4) (2022)
Abigail L Lind, Katherine S Pollard
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing. Microbiome 9 (1) (2021)
Sean Whalen, Jacob Schreiber, William Stafford Noble, Katherine S Pollard
Navigating the pitfalls of applying machine learning in genomics. Nature reviews. Genetics (2021)
Zhou Jason Shi, Boris Dimitrov, Chunyu Zhao, Stephen Nayfach, Katherine S Pollard
Fast and accurate metagenotyping of the human gut microbiome with GT-Pro. Nature biotechnology 40 (4) (2021)
Maureen Pittman, Katherine S Pollard
Ultraconservation of enhancers is not ultranecessary. Nature genetics 53 (4) (2021)
Reiner Jumpertz von Schwartzenberg, Jordan E Bisanz, Svetlana Lyalina, Peter Spanogiannopoulos, Qi Yan Ang, Jingwei Cai, Sophia Dickmann, Marie Friedrich, Su-Yang Liu, Stephanie L Collins, Danielle Ingebrigtsen, Steve Miller, Jessie A Turnbaugh, Andrew D Patterson, Katherine S Pollard, Knut Mai, Joachim Spranger, Peter J Turnbaugh
Caloric restriction disrupts the microbiota and colonization resistance. Nature 595 (7866) (2021)
Michael Alexanian, Pawel F Przytycki, Rudi Micheletti, Arun Padmanabhan, Lin Ye, Joshua G Travers, Barbara Gonzalez-Teran, Ana Catarina Silva, Qiming Duan, Sanjeev S Ranade, Franco Felix, Ricardo Linares Saldana, Li Li, Clara Youngna Lee, Nandhini Sadagopan, Angelo Pelonero, Yu Huang, Gaia Andreoletti, Rajan Jain, Timothy A McKinsey, Michael G Rosenfeld, Casey A Gifford, Katherine S Pollard, Saptarsi M Haldar, Deepak Srivastava
A transcriptional switch governs fibroblast activation in heart disease. Nature 595 (7867) (2021)
Ryan S Ziffra, Chang N Kim, Jayden M Ross, Amy B Wilfert, Tychele N Turner, Maximilian Haeussler, Alex M Casella, Pawel F Przytycki, Kathleen C Keough, David Shin, Derek Bogdanoff, Anat Kreimer, Katherine S Pollard, Seth A Ament, Evan E Eichler, Nadav Ahituv, Tomasz Jan Nowakowski
Single-cell epigenomics reveals mechanisms of human cortical development. Nature 598 (7879) (2021)
Xiaofan Jin, Geoff Fudenberg, Katherine S Pollard
Genome-wide variability in recombination activity is associated with meiotic chromatin organization. Genome research 31 (9) (2021)
Pawel F Przytycki, Katherine S Pollard
CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues. Genome biology 22 (1) (2021)
Tina Y Liu, Gavin J Knott, Dylan C J Smock, John James Desmarais, Sungmin Son, Abdul Bhuiya, Shrutee Jakhanwal, Noam Prywes, Shreeya Agrawal, María Díaz de León Derby, Neil A Switz, Maxim Armstrong, Andrew R Harris, Emeric J Charles, Brittney W Thornton, Parinaz Fozouni, Jeffrey Shu, Stephanie I Stephens, G Renuka Kumar, Chunyu Zhao, Amanda Mok, Anthony T Iavarone, Arturo M Escajeda, Roger McIntosh, Shineui Kim, Eli J Dugan, null null, Katherine S Pollard, Ming X Tan, Melanie M Ott, Daniel A Fletcher, Liana F Lareau, Patrick D Hsu, David F Savage, Jennifer A Doudna
Accelerated RNA detection using tandem CRISPR nucleases. Nature chemical biology 17 (9) (2021)
Geoffrey Fudenberg, David R Kelley, Katherine S Pollard
Predicting 3D genome folding from DNA sequence with Akita. Nature methods 17 (11) (2020)
Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America 117 (36) (2020)
Alexandre Almeida, Stephen Nayfach, Miguel Boland, Francesco Strozzi, Martin Beracochea, Zhou Jason Shi, Katherine S Pollard, Ekaterina Sakharova, Donovan H Parks, Philip Hugenholtz, Nicola Segata, Nikos C Kyrpides, Robert D Finn
A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature biotechnology 39 (1) (2020)
David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra, Robyn M Kaake, Andrew R Weckstein, Tristan W Owens, Meghna Gupta, Sergei Pourmal, Erron W Titus, Merve Cakir, Margaret Soucheray, Michael J McGregor, Zeynep Cakir, Gwendolyn M Jang, Matthew J O'Meara, Tia A Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, Danielle L Swaney, Jacqueline M Fabius, Manisha Ummadi, Beril Tutuncuoglu, Ujjwal Rathore, Maya Modak, Paige Haas, Kelsey M Haas, Zun Zar Chi Naing, Ernst H Pulido, Ying Shi, Inigo Barrio-Hernandez, Danish Memon, Eirini Petsalaki, Alistair S Dunham, Miguel Correa Marrero, David Francis Burke, Cassandra Koh, Thomas Vallet, Jesus A Silvas, Caleigh M Azumaya, Christian B Billesbølle, Axel F Brilot, Melody G Campbell, Amy Diallo, Miles Sasha Dickinson, Devan Diwanji, Nadia Herrera, Nicholas Hoppe, Huong T Kratochvil, Yanxin Liu, Gregory E Merz, Michelle Moritz, Henry C Nguyen, Carlos A Nowotny, Cristina Puchades, Alexandrea N Rizo, Ursula Schulze-Gahmen, Amber M Smith, Ming Sun, Iris D Young, Jianhua Zhao, Daniel Asarnow, Justin T Biel, Alisa Bowen, Julian R Braxton, Jen Chen, Cynthia M Chio, Un Seng Chio, Ishan Deshpande, Loan Doan, Bryan Faust, Sebastian Flores, Mingliang Jin, Sun Kyung Kim, Victor L Lam, Fei Li, Junrui Li, Grant J Jensen, Yang Li, Xi Liu, Megan Lo, Kyle E Lopez, Arthur A Melo, Frank R Moss, Phuong Nguyen, Joana Paulino, Komal Ishwar Pawar, Jessica K Peters, Thomas H Pospiech, Maliheh Safari, Smriti Sangwan, Kaitlin Schaefer, Paul V Thomas, Aye C Thwin, Raphael Trenker, Eric Tse, Tsz Kin Martin Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Sunny Zhang, Fengbo Zhou, Daniel J Saltzberg, null null, Anthony J Hodder, Amber S Shun-Shion, Daniel M Williams, Kris M White, Romel Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, Arvind H Patel, Suzannah J Rihn, Mir Mubashir Khalid, Albert Vallejo-Gracia, Parinaz Fozouni, Camille R Simoneau, Theodore L Roth, David Wu, Mohd Anisul Karim, Maya Ghoussaini, Ian Dunham, Francesco Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James P Logue, Marisa E McGrath, Stuart M Weston, Robert E Haupt, C James Hastie, Matthew Elliott, Fiona Brown, Kerry A Burness, Elaine Reid, Mark Dorward, Clare Johnson, Stuart G Wilkinson, Anna Geyer, Daniel M Giesel, Carla Baillie, Samantha Raggett, Hannah Leech, Rachel Toth, Nicola Goodman, Kathleen C Keough, Abigail L Lind, null null, Reyna J Klesh, Kafi R Hemphill, Jared Carlson-Stevermer, Jennifer Oki, Kevin Holden, Travis Maures, Katherine S Pollard, Andrej Sali, David A Agard, Yifan Cheng, Brian K Shoichet, Adam Frost, Natalia Jura, Tanja Kortemme, Aashish Manglik, Daniel R Southworth, Robert M Stroud, Dario R Alessi, Paul Davies, Matthew B Friemann, Trey Ideker, Carmen Abate, Nolwenn Jouvenet, Georg Kochs, Brian K Shoichet, Melanie M Ott, Massimo Palmarini, Kevan M Shokat, Adolfo García-Sastre, Jeremy A Rassen, Robert Grosse, Oren S Rosenberg, Kliment A Verba, Christopher F Basler, Marco Vignuzzi, Andrew A Peden, Pedro Beltrao, Nevan J Krogan
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.) 370 (6521) (2020)
Elphѐge P Nora, Laura Caccianini, Geoffrey Fudenberg, Kevin So, Vasumathi Kameswaran, Abigail Nagle, Alec Uebersohn, Bassam Hajj, Agnès Le Saux, Antoine Coulon, Leonid A Mirny, Katherine S Pollard, Maxime Dahan, Benoit G Bruneau
Molecular basis of CTCF binding polarity in genome folding. Nature communications 11 (1) (2020)
Kathleen C Keough, Svetlana Lyalina, Michael P Olvera, Sean Whalen, Bruce R Conklin, Katherine S Pollard
AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design. Genome biology 20 (1) (2019)
Adrienne Hoarfrost, Stephen Nayfach, Joshua Ladau, Shibu Yooseph, Carol Arnosti, Chris L Dupont, Katherine S Pollard
Global ecotypes in the ubiquitous marine clade SAR86. The ISME journal 14 (1) (2019)
Nandita R Garud, Benjamin H Good, Oskar Hallatschek, Katherine S Pollard
Evolutionary dynamics of bacteria in the gut microbiome within and across hosts. PLoS biology 17 (1) (2019)
Stephanie A Schalbetter, Geoffrey Fudenberg, Jonathan Baxter, Katherine S Pollard, Matthew J Neale
Principles of meiotic chromosome assembly revealed in S. cerevisiae. Nature communications 10 (1) (2019)
Rachel N Carmody, Jordan E Bisanz, Benjamin P Bowen, Corinne F Maurice, Svetlana Lyalina, Katherine B Louie, Daniel G C Treen, Katia S Chadaideh, Vayu Maini Rekdal, Elizabeth N Bess, Peter Spanogiannopoulos, Qi Yan Ang, Kylynda C Bauer, Thomas W Balon, Katherine S Pollard, Trent R Northen, Peter J Turnbaugh
Cooking shapes the structure and function of the gut microbiome. Nature microbiology 4 (12) (2019)
Abigail L Lind, Yvonne Y Y Lai, Yulia Mostovoy, Alisha K Holloway, Alessio Iannucci, Angel C Y Mak, Marco Fondi, Valerio Orlandini, Walter L Eckalbar, Massimo Milan, Michail Rovatsos, Ilya G Kichigin, Alexey I Makunin, Martina Johnson Pokorná, Marie Altmanová, Vladimir A Trifonov, Elio Schijlen, Lukáš Kratochvíl, Renato Fani, Petr Velenský, Ivan Rehák, Tomaso Patarnello, Tim S Jessop, James W Hicks, Oliver A Ryder, Joseph R Mendelson, Claudio Ciofi, Pui-Yan Kwok, Katherine S Pollard, Benoit G Bruneau
Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nature ecology & evolution 3 (8) (2019)
Joshua Ladau, Yu Shi, Xin Jing, Jin-Sheng He, Litong Chen, Xiangui Lin, Noah Fierer, Jack A Gilbert, Katherine S Pollard, Haiyan Chu
Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes. mSystems 3 (5) (2018)
Stacia K Wyman, Aram Avila-Herrera, Stephen Nayfach, Katherine S Pollard
A most wanted list of conserved microbial protein families with no known domains. PloS one 13 (10) (2018)
Stephen Nayfach, Beltran Rodriguez-Mueller, Nandita Garud, Katherine S Pollard
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography. Genome research 26 (11) (2016)

Katherine S Pollard.css-eqlu8i{font-size:small;padding-left:4px;} (Katie S Pollard)

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Katherine S Pollard (Katie S Pollard)